Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001584

Physical Location & Seq

Genomic Coordinates Forward (+)

5950814 .. 5956601

Gene Structure 5788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g06120.13

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGGCAGTGGGGAACAAGGAAGAGGTGGTGGTGGAGGAAATAGTGAAAGCCCGTACGGATAAGAGGCAGTACAGGAGGATTGTCCTCCCGAACTCGCTCGAAGTTCTCCTCATCAGCGATCATGATACTGACAAGTGTGCTGCTTCCATGGATGTCAACGTTGGTGCTTTCAGCGACCCTGATGGGCTGGAGGGCCTTGCCCATTTCCTTGAGCATATGCTGTTTTATGCGAGTGAAAAGTACCCTTCGGAGGATAGTTACTCCAAGTACATCAACGAGCATGGAGGACGAAGAAACGCTTATACAGCTTCTGAGAACACGAACTATTATTTTGACATTAATTCCGATGGTTTTGAAGAGGCTTTAGACAGATTTGCTCAGTTCTTTATTAACCCATTGATGTCGGCTGATGCTACAATGAGGGAAATTAAAGCTGTTGATTCTGAGAATCAAAATAACCTGTTGTCTGATGAACGGAGACTAAAATGGCTTCAGAAACATCTAAGTTCTGCGGACCATCCATACCATAAATTTAGTACAGGGAATTGGGAAACTTTGGACGTCCGGCCAAAGGCAAGAGGATTGGATACCAGAGAAGAGCTTATTAAGTTCTATAAACAATATTATTCCGCTAACGTCATGCATCTTGTCATTTATGGAAAAGAAAACCTTGACAAACTTCAAGCCACTGTAGAGGACAAGTTCAAGGATATTAGAAACATTGACCGCAACTGCCTTCGTTTTGGCGGCGAGCCATGCACATCAGAACATTTACAGATTCTTGTCAAAACTGTCCCAATCAAAGAGGGTCATAAGCTGAGAGTTGTGTGGCCAATAACTCCGGAAATTCACCATTACAAGGAAGGGCCATGTAGGTATCTTAGTCATCTCATTCACCATGAAGCAAAGGGATCTTTGTATGCGGTGTTGAAAACTTTGGGATGGGCAACAGGTTTGTCTGCTGGGGAATCAGATTCGACTTTGGAATTTTCTTTCTTTAAAGTAGATATTGATCTCACTGATGCGGGTCATGACCACATGCAAGACATAGTAGGCTTGCTTTTCAAATACATTTCCCTCTTACAGCAGTGTGGTGTCTGCAAATGGATTTTCGATGAGCTTTCTGCTGTTTGCGAGACGAAGTTTCATTATCAGGACAAAATTCAGCCTATTAATTATGTGGTCAGCATTTCGCCAAATATGCAGAAATATCCCCCGAAAGATTGGCTAGTAAGATCATCCTTGCCTTCTAACTTCAGTCCGGACATTATTCAAATGGTGCTGAACAAGCTTTCTTCAGACAACGTCAGAATTTTCTGGGAGTCAAAGAAATTTGAAGGTCATACTAACATGTCTGAGCCATGGTATGGAACTGCTTATTCCGTCGAGAGAATTACTGGCTCCATGATTCAGGAATGGATATTATCTTCCCCAAATGAGAATCTGCACTTACCAGCCCGTAATGTGTTCATTCCCACTGACTTTTCGCTTAAGAATGATCTTGAGAAGGTGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

506

Amino Acids

58.21

Weight (kDa)

5.81

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41790 AT3G57470 AT3G57470 AT3G57470 AT3G57470 AT3G57470 AT3G57470
fragaria_vesca	FvH4_6g23690 FvH4_6g23690 FvH4_6g23690 FvH4_6g23690 FvH4_6g23690
malus_domestica	MD09G1162300.v1.1 MD12G1073300.v1.1 MD14G1071400.v1.1
prunus_persica	Prupe.7G061600_v2.0.a1
pyrus_communis	pycom12g06310 pycom12g06320 pycom14g06090 pycom14g06100 pycom14g06120
rosa_chinensis	RchiOBHm_Chr3g0481841 RchiOBHm_Chr3g0482151 RchiOBHm_Chr3g0482171
rosa_laevigata	RLG00000023367 RLG00000023371
rosa_multiflora	Rmu_sc0000192.1_g000006 Rmu_sc0000192.1_g000021 Rmu_sc0001738.1_g000037 Rmu_sc0001738.1_g000040 Rmu_sc0007237.1_g000003
rosa_roxburghii	Rroxscaffold_6G00399680 Rroxscaffold_6G00400000 Rroxscaffold_6G00400030
rosa_rugosa	Rorug03G0195200 Rorug03G0195300 Rorug03G0195400 Rorug03G0195500
rosa_samantha	Rh3AG245000 Rh3AG246300 Rh3AG246900 Rh3BG281400 Rh3BG281500 Rh3CG277400 Rh3CG277500 Rh3DG273700 Rh3DG274100
rosa_wichuraiana	Rw3G021870 Rw3G022020 Rw3G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	564
AccB7I	CCANNNNNTGG	1 cut(s)	1367
AccIII	TCCGGA	2 cut(s)	841, 1261
AciI	CCGC	6 cut(s)	512, 630, 727, 747, 923, 1025
AclI	AACGTT	1 cut(s)	159
AclWI	GGATC	1 cut(s)	919
AcoI	YGGCCR	2 cut(s)	566, 830
AcsI	RAATTY	6 cut(s)	530, 846, 986, 1161, 1311, 1331
AcuI	CTGAAG	3 cut(s)	476, 1240, 1281
AcyI	GRCGYC	1 cut(s)	561
AfaI	GTAC	5 cut(s)	55, 71, 242, 269, 538
AfiI	CCNNNNNNNGG	4 cut(s)	250, 571, 859, 1367
AflII	CTTAAG	1 cut(s)	1490
AflIII	ACRYGT	1 cut(s)	1350
AgsI	TTSAA	7 cut(s)	356, 683, 706, 931, 1066, 1274, 1337
AluBI	AGCT	6 cut(s)	308, 434, 601, 817, 1120, 1291
AluI	AGCT	6 cut(s)	308, 434, 601, 817, 1120, 1291
Alw26I	GTCTC	2 cut(s)	472, 1130
AlwI	GGATC	1 cut(s)	919
AlwNI	CAGNNNCTG	1 cut(s)	311
Aor13HI	TCCGGA	2 cut(s)	841, 1261
AoxI	GGCC	4 cut(s)	193, 566, 830, 866
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	6 cut(s)	530, 846, 986, 1161, 1311, 1331
AseI	ATTAAT	2 cut(s)	339, 1173
AspS9I	GGNCC	3 cut(s)	193, 514, 866
AsuHPI	GGTGA	2 cut(s)	842, 887
AvaII	GGWCC	1 cut(s)	514
BalI	TGGCCA	1 cut(s)	832
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	4 cut(s)	176, 341, 525, 936
BciVI	GTATCC	1 cut(s)	580
BcoDI	GTCTC	2 cut(s)	472, 1130
BfaI	CTAG	1 cut(s)	1229
BfmI	CTRYAG	1 cut(s)	690
BfrI	CTTAAG	1 cut(s)	1490
BfuI	GTATCC	1 cut(s)	580
BisI	GCNGC	2 cut(s)	141, 748
BlsI	GCNGC	2 cut(s)	142, 749
Bme18I	GGWCC	1 cut(s)	514
BmgT120I	GGNCC	3 cut(s)	193, 514, 866
BmiI	GGNNCC	1 cut(s)	1402
BmsI	GCATC	3 cut(s)	400, 652, 1012
BpmI	CTGGAG	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	1011
BsaHI	GRCGYC	1 cut(s)	561
BsaJI	CCNNGG	2 cut(s)	147, 1361
BsaWI	WCCGGW	2 cut(s)	841, 1261
Bsc4I	CCNNNNNNNGG	4 cut(s)	250, 571, 859, 1367
Bse1I	ACTGG	1 cut(s)	1402
Bse8I	GATNNNNATC	1 cut(s)	1011
BseAI	TCCGGA	2 cut(s)	841, 1261
BseDI	CCNNGG	2 cut(s)	147, 1361
BseGI	GGATG	4 cut(s)	157, 517, 947, 1238
BseJI	GATNNNNATC	1 cut(s)	1011
BseLI	CCNNNNNNNGG	4 cut(s)	250, 571, 859, 1367
BseMII	CTCAG	5 cut(s)	303, 392, 435, 809, 1347
BseNI	ACTGG	1 cut(s)	1402
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	127
BseYI	CCCAGC	1 cut(s)	962
BsgI	GTGCAG	1 cut(s)	1430
BshFI	GGCC	4 cut(s)	195, 568, 832, 868
BsiSI	CCGG	3 cut(s)	565, 842, 1262
BsiWI	CGTACG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	4 cut(s)	250, 571, 859, 1367
BsmAI	GTCTC	2 cut(s)	472, 1130
BsmBI	CGTCTC	1 cut(s)	1130
BsmFI	GGGAC	1 cut(s)	779
BsnI	GGCC	4 cut(s)	195, 568, 832, 868
Bsp13I	TCCGGA	2 cut(s)	841, 1261
Bsp143I	GATC	5 cut(s)	118, 911, 1012, 1235, 1498
Bsp19I	CCATGG	2 cut(s)	147, 1361
BspACI	CCGC	6 cut(s)	512, 630, 727, 747, 923, 1025
BspANI	GGCC	4 cut(s)	195, 568, 832, 868
BspCNI	CTCAG	5 cut(s)	304, 391, 436, 810, 1348
BspEI	TCCGGA	2 cut(s)	841, 1261
BspHI	TCATGA	2 cut(s)	121, 1030
BspLI	GGNNCC	1 cut(s)	1402
BspPI	GGATC	1 cut(s)	919
BspQI	GCTCTTC	1 cut(s)	591
BspTI	CTTAAG	1 cut(s)	1490
BsrI	ACTGG	1 cut(s)	1402
BssECI	CCNNGG	2 cut(s)	147, 1361
BssMI	GATC	5 cut(s)	118, 911, 1012, 1235, 1498
BssNI	GRCGYC	1 cut(s)	561
BssT1I	CCWWGG	2 cut(s)	147, 1361
Bst4CI	ACNGT	2 cut(s)	691, 793
Bst6I	CTCTTC	3 cut(s)	15, 351, 591
BstACI	GRCGYC	1 cut(s)	561
BstAFI	CTTAAG	1 cut(s)	1490
BstC8I	GCNNGC	2 cut(s)	752, 1058
BstDEI	CTNAG	7 cut(s)	312, 378, 444, 503, 818, 881, 1356
BstDSI	CCRYGG	2 cut(s)	147, 1361
BstF5I	GGATG	4 cut(s)	157, 517, 947, 1238
BstKTI	GATC	5 cut(s)	121, 914, 1015, 1238, 1501
BstMAI	GTCTC	2 cut(s)	472, 1130
BstMBI	GATC	5 cut(s)	118, 911, 1012, 1235, 1498
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 756, 1201, 1288
BstNSI	RCATGY	2 cut(s)	1042, 1354
BstSFI	CTRYAG	1 cut(s)	690
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	911
BstYI	RGATCY	1 cut(s)	911
BsuI	GTATCC	1 cut(s)	580
BsuRI	GGCC	4 cut(s)	195, 568, 832, 868
BtgI	CCRYGG	2 cut(s)	147, 1361
BtsCI	GGATG	4 cut(s)	157, 517, 947, 1238
BtsI	GCAGTG	2 cut(s)	12, 1094
BtsIMutI	CAGTG	5 cut(s)	12, 687, 1017, 1094, 1476
Cac8I	GCNNGC	2 cut(s)	752, 1058
CaiI	CAGNNNCTG	1 cut(s)	311
CciI	TCATGA	2 cut(s)	121, 1030
Cfr13I	GGNCC	3 cut(s)	193, 514, 866
Csp6I	GTAC	5 cut(s)	54, 70, 241, 268, 537
CviQI	GTAC	5 cut(s)	54, 70, 241, 268, 537
DdeI	CTNAG	7 cut(s)	312, 378, 444, 503, 818, 881, 1356
DpnI	GATC	5 cut(s)	120, 913, 1014, 1237, 1500
DpnII	GATC	5 cut(s)	118, 911, 1012, 1235, 1498
DraI	TTTAAA	1 cut(s)	1000
EaeI	YGGCCR	2 cut(s)	566, 830
Eam1104I	CTCTTC	3 cut(s)	15, 351, 591
EarI	CTCTTC	3 cut(s)	15, 351, 591
Eco130I	CCWWGG	2 cut(s)	147, 1361
Eco47I	GGWCC	1 cut(s)	514
Eco57I	CTGAAG	3 cut(s)	476, 1240, 1281
EcoO109I	RGGNCCY	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	147, 1361
EcoT22I	ATGCAT	1 cut(s)	645
ErhI	CCWWGG	2 cut(s)	147, 1361
Esp3I	CGTCTC	1 cut(s)	1130
FalI	AAGNNNNNCTT	4 cut(s)	283, 315, 654, 686
FaqI	GGGAC	1 cut(s)	779
FauI	CCCGC	1 cut(s)	1018
FauNDI	CATATG	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	141, 748
FokI	GGATG	4 cut(s)	164, 504, 954, 1225
Fsp4HI	GCNGC	2 cut(s)	141, 748
FspBI	CTAG	1 cut(s)	1229
GluI	GCNGC	2 cut(s)	141, 748
GsaI	CCCAGC	1 cut(s)	966
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	4 cut(s)	195, 568, 832, 868
HapII	CCGG	3 cut(s)	565, 842, 1262
Hin1I	GRCGYC	1 cut(s)	561
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	1289
HinfI	GANTC	8 cut(s)	440, 448, 778, 968, 974, 1322, 1408, 1441
HpaII	CCGG	3 cut(s)	565, 842, 1262
HphI	GGTGA	2 cut(s)	842, 887
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188III	TCNNGA	9 cut(s)	88, 122, 842, 1031, 1154, 1262, 1387, 1412, 1502
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	1388
HpyAV	CCTTC	6 cut(s)	255, 746, 857, 1257, 1331, 1501
HpyCH4III	ACNGT	2 cut(s)	691, 793
HpyCH4IV	ACGT	4 cut(s)	159, 561, 636, 1305
HpyCH4V	TGCA	6 cut(s)	643, 759, 1042, 1101, 1204, 1447
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 756, 1201, 1288
HpyF3I	CTNAG	7 cut(s)	312, 378, 444, 503, 818, 881, 1356
HpySE526I	ACGT	4 cut(s)	159, 561, 636, 1305
Hsp92I	GRCGYC	1 cut(s)	561
Kpn2I	TCCGGA	2 cut(s)	841, 1261
Kzo9I	GATC	5 cut(s)	118, 911, 1012, 1235, 1498
LguI	GCTCTTC	1 cut(s)	591
LmnI	GCTCC	1 cut(s)	1406
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	3 cut(s)	400, 652, 1012
MaeI	CTAG	1 cut(s)	1229
MaeII	ACGT	4 cut(s)	159, 561, 636, 1305
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	5 cut(s)	120, 913, 1014, 1237, 1500
MboI	GATC	5 cut(s)	118, 911, 1012, 1235, 1498
MboII	GAAGA	6 cut(s)	32, 303, 368, 608, 1287, 1419
MflI	RGATCY	1 cut(s)	911
MlsI	TGGCCA	1 cut(s)	832
MluNI	TGGCCA	1 cut(s)	832
MlyI	GAGTC	1 cut(s)	1331
Mox20I	TGGCCA	1 cut(s)	832
Mph1103I	ATGCAT	1 cut(s)	645
MroI	TCCGGA	2 cut(s)	841, 1261
MscI	TGGCCA	1 cut(s)	832
MseI	TTAA	7 cut(s)	339, 390, 429, 606, 999, 1173, 1491
Msp20I	TGGCCA	1 cut(s)	832
MspCI	CTTAAG	1 cut(s)	1490
MspI	CCGG	3 cut(s)	565, 842, 1262
MwoI	GCNNNNNNNGC	4 cut(s)	305, 756, 1201, 1288
NcoI	CCATGG	2 cut(s)	147, 1361
NdeI	CATATG	1 cut(s)	216
NdeII	GATC	5 cut(s)	118, 911, 1012, 1235, 1498
NlaIV	GGNNCC	1 cut(s)	1402
NsiI	ATGCAT	1 cut(s)	645
NspI	RCATGY	2 cut(s)	1042, 1354
PagI	TCATGA	2 cut(s)	121, 1030
PciI	ACATGT	1 cut(s)	1350
PciSI	GCTCTTC	1 cut(s)	591
PfeI	GAWTC	7 cut(s)	440, 448, 778, 968, 974, 1408, 1441
Pfl23II	CGTACG	1 cut(s)	53
PflFI	GACNNNGTC	1 cut(s)	1304
PflMI	CCANNNNNTGG	1 cut(s)	1367
PkrI	GCNGC	2 cut(s)	142, 749
PleI	GAGTC	1 cut(s)	1330
PpsI	GAGTC	1 cut(s)	1330
PscI	ACATGT	1 cut(s)	1350
PshBI	ATTAAT	2 cut(s)	339, 1173
Psp1406I	AACGTT	1 cut(s)	159
PspFI	CCCAGC	1 cut(s)	962
PspLI	CGTACG	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	1402
PspPI	GGNCC	3 cut(s)	193, 514, 866
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	911
PsyI	GACNNNGTC	1 cut(s)	1304
RsaI	GTAC	5 cut(s)	55, 71, 242, 269, 538
RsaNI	GTAC	5 cut(s)	54, 70, 241, 268, 537
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	7 cut(s)	339, 390, 429, 606, 999, 1173, 1491
SatI	GCNGC	2 cut(s)	141, 748
Sau3AI	GATC	5 cut(s)	118, 911, 1012, 1235, 1498
Sau96I	GGNCC	3 cut(s)	193, 514, 866
SchI	GAGTC	1 cut(s)	1331
SfaNI	GCATC	3 cut(s)	400, 652, 1012
SfcI	CTRYAG	1 cut(s)	690
SinI	GGWCC	1 cut(s)	514
SmlI	CTYRAG	3 cut(s)	209, 1490, 1502
SmoI	CTYRAG	3 cut(s)	209, 1490, 1502
SsiI	CCGC	6 cut(s)	512, 630, 727, 747, 923, 1025
SspI	AATATT	1 cut(s)	623
SspMI	CTAG	1 cut(s)	1229
StyI	CCWWGG	2 cut(s)	147, 1361
TaaI	ACNGT	2 cut(s)	691, 793
TaiI	ACGT	4 cut(s)	162, 564, 639, 1308
TaqI	TCGA	4 cut(s)	99, 977, 1113, 1386
TatI	WGTACW	3 cut(s)	69, 267, 536
TauI	GCSGC	1 cut(s)	750
TfiI	GAWTC	7 cut(s)	440, 448, 778, 968, 974, 1408, 1441
Tru1I	TTAA	7 cut(s)	339, 390, 429, 606, 999, 1173, 1491
Tru9I	TTAA	7 cut(s)	339, 390, 429, 606, 999, 1173, 1491
TscAI	CASTG	5 cut(s)	12, 694, 1024, 1094, 1483
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	4 cut(s)	486, 915, 1136, 1459
TspGWI	ACGGA	3 cut(s)	71, 490, 1372
TspRI	CASTG	5 cut(s)	12, 694, 1024, 1094, 1483
Tth111I	GACNNNGTC	1 cut(s)	1304
Van91I	CCANNNNNTGG	1 cut(s)	1367
Vha464I	CTTAAG	1 cut(s)	1490
VpaK11BI	GGWCC	1 cut(s)	514
VspI	ATTAAT	2 cut(s)	339, 1173
XapI	RAATTY	6 cut(s)	530, 846, 986, 1161, 1311, 1331
XceI	RCATGY	2 cut(s)	1042, 1354
XspI	CTAG	1 cut(s)	1229
ZraI	GACGTC	1 cut(s)	562
Zsp2I	ATGCAT	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.