Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001584

Physical Location & Seq

Genomic Coordinates Forward (+)

6445086 .. 6447428

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCTCTCGAGGGCCTTCGTGGAGTGTTATACAGCTGGAAACCTTGAGAAGAACGAGGCTGAGTCAATGATCCAGCATATTGAAGATGTTTTCTTTAAGGGCTCAAATAATATTTCCCGAACTTTATTTCCATCCCAGCATTTGACGAATAGAGTTGTGAAACTTGAAAAGGGCAAGAGCTACTTCTACCCTGTGGAAGGACTTAATCCAAGTGACGAGAATTCTGCCCTTGTCCACTACATCCAGGTTCATCAGGATGACTTTATGCTGAATGTGAAACTTCAGCTGTTCGCTCTTATTGCAAAGCAGCCTGCCTTTCACCAGCTTAGATCTGTTGAGCAACTTGGTTACATCACGGTCCTCTTGCAGAGGAATGATTCTGGTATCCGTGGGGTGCAGTTTGTTATACAATCCACTGCGAAGGATCCAGCACATATTGACTTGAGAGTGGAGGAATTCCTCAAGGGGTTCGAGAGTAAACTTTATGACATGCCTAGTGACGAATTCAAGAGCAACGTAAATGCATTGATCGACATGAAGCTTGAGAAGCACAAGAATTTAAGGGAAGAAGCTGGATTTTATTGGAGGGAGATTTCAGATGGGACACTCAAGTTTGATAGGAAAGAGTCTGAGATTGCAGCACTGAGGCAGCTTACACAGCAAGAATTGATAGATTTTTTCAATGAGCATATAAAAGTTGGGGCTCCTCAAAAGAGGTCGTTAAGCGTACGAGTGTACGGGAACTCACATTCATCGGAGTACGCTACAGATGCAAGCTCACCGGTGCAACCTTGCTGCGTCAAAATAGACGATATATTCAGCTTCAGAAGGTCACAACCTCTTTATGGTTCATTCAAGGGAAATCATGTGAAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

293

Amino Acids

33.52

Weight (kDa)

6.56

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41790 AT3G57470 AT3G57470 AT3G57470 AT3G57470 AT3G57470 AT3G57470
fragaria_vesca	FvH4_6g23690 FvH4_6g23690 FvH4_6g23690 FvH4_6g23690 FvH4_6g23690
malus_domestica	MD09G1162300.v1.1 MD12G1073300.v1.1 MD14G1071400.v1.1
prunus_persica	Prupe.7G061600_v2.0.a1
pyrus_communis	pycom12g06310 pycom12g06320 pycom14g06090 pycom14g06100 pycom14g06120
rosa_chinensis	RchiOBHm_Chr3g0481841 RchiOBHm_Chr3g0482151 RchiOBHm_Chr3g0482171
rosa_laevigata	RLG00000023367 RLG00000023371
rosa_multiflora	Rmu_sc0000192.1_g000006 Rmu_sc0000192.1_g000021 Rmu_sc0001738.1_g000037 Rmu_sc0001738.1_g000040 Rmu_sc0007237.1_g000003
rosa_roxburghii	Rroxscaffold_6G00399680 Rroxscaffold_6G00400000 Rroxscaffold_6G00400030
rosa_rugosa	Rorug03G0195200 Rorug03G0195300 Rorug03G0195400 Rorug03G0195500
rosa_samantha	Rh3AG245000 Rh3AG246300 Rh3AG246900 Rh3BG281400 Rh3BG281500 Rh3CG277400 Rh3CG277500 Rh3DG273700 Rh3DG274100
rosa_wichuraiana	Rw3G021870 Rw3G022020 Rw3G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	64, 419, 432
AcsI	RAATTY	4 cut(s)	220, 455, 503, 556
AcuI	CTGAAG	2 cut(s)	266, 808
AfaI	GTAC	3 cut(s)	729, 737, 761
AfiI	CCNNNNNNNGG	2 cut(s)	197, 845
AgeI	ACCGGT	1 cut(s)	781
AgsI	TTSAA	5 cut(s)	83, 167, 508, 682, 856
AjnI	CCWGG	1 cut(s)	243
AloI	GAACNNNNNNTCC	2 cut(s)	112, 144
AluBI	AGCT	9 cut(s)	35, 180, 286, 325, 541, 572, 652, 777, 822
AluI	AGCT	9 cut(s)	35, 180, 286, 325, 541, 572, 652, 777, 822
AlwI	GGATC	3 cut(s)	64, 419, 432
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	4 cut(s)	307, 638, 649, 795
ApoI	RAATTY	4 cut(s)	220, 455, 503, 556
AsiGI	ACCGGT	1 cut(s)	781
AspS9I	GGNCC	2 cut(s)	12, 358
AsuHPI	GGTGA	2 cut(s)	311, 771
AvaI	CYCGRG	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	358
BamHI	GGATCC	1 cut(s)	424
BanII	GRGCYC	2 cut(s)	104, 706
BbvI	GCAGC	4 cut(s)	319, 650, 661, 782
BccI	CCATC	2 cut(s)	139, 593
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	1 cut(s)	245
BciVI	GTATCC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	1 cut(s)	765
BfuI	GTATCC	1 cut(s)	395
BglII	AGATCT	1 cut(s)	329
BisI	GCNGC	4 cut(s)	308, 639, 650, 796
BlsI	GCNGC	4 cut(s)	309, 640, 651, 797
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	7
BmgT120I	GGNCC	2 cut(s)	12, 358
BmiI	GGNNCC	2 cut(s)	426, 705
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	760
BpuEI	CTTGAG	5 cut(s)	65, 446, 463, 563, 593
BsaJI	CCNNGG	1 cut(s)	388
BsaWI	WCCGGW	1 cut(s)	781
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 845
Bse118I	RCCGGY	1 cut(s)	781
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	3 cut(s)	131, 240, 262
BseLI	CCNNNNNNNGG	2 cut(s)	197, 845
BseMII	CTCAG	3 cut(s)	51, 621, 635
BseRI	GAGGAG	1 cut(s)	696
BseXI	GCAGC	4 cut(s)	319, 650, 661, 782
BseYI	CCCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	416
BshFI	GGCC	1 cut(s)	14
BshTI	ACCGGT	1 cut(s)	781
BsiHKCI	CYCGRG	1 cut(s)	7
BsiSI	CCGG	1 cut(s)	782
BsiWI	CGTACG	1 cut(s)	727
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	2 cut(s)	197, 845
BsmFI	GGGAC	1 cut(s)	616
BsnI	GGCC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	7
Bsp1286I	GDGCHC	2 cut(s)	104, 706
Bsp143I	GATC	4 cut(s)	69, 329, 424, 528
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	3 cut(s)	52, 622, 636
BspLI	GGNNCC	2 cut(s)	426, 705
BspPI	GGATC	3 cut(s)	64, 419, 432
BsrFI	RCCGGY	1 cut(s)	781
BssAI	RCCGGY	1 cut(s)	781
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	4 cut(s)	69, 329, 424, 528
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	312, 775
BstDEI	CTNAG	4 cut(s)	60, 326, 630, 644
BstDSI	CCRYGG	1 cut(s)	388
BstENI	CCTNNNNNAGG	1 cut(s)	195
BstF5I	GGATG	3 cut(s)	131, 240, 262
BstKTI	GATC	4 cut(s)	72, 332, 427, 531
BstMBI	GATC	4 cut(s)	69, 329, 424, 528
BstMWI	GCNNNNNNNGC	4 cut(s)	299, 547, 658, 770
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	493
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	765
BstV1I	GCAGC	4 cut(s)	319, 650, 661, 782
BstX2I	RGATCY	2 cut(s)	329, 424
BstYI	RGATCY	2 cut(s)	329, 424
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	388
BtsCI	GGATG	3 cut(s)	131, 240, 262
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	2 cut(s)	414, 641
Cac8I	GCNNGC	2 cut(s)	312, 775
Cfr10I	RCCGGY	1 cut(s)	781
Cfr13I	GGNCC	2 cut(s)	12, 358
CseI	GACGC	1 cut(s)	787
Csp6I	GTAC	3 cut(s)	728, 736, 760
CspAI	ACCGGT	1 cut(s)	781
CviAII	CATG	3 cut(s)	490, 535, 866
CviQI	GTAC	3 cut(s)	728, 736, 760
DdeI	CTNAG	4 cut(s)	60, 326, 630, 644
DpnI	GATC	4 cut(s)	71, 331, 426, 530
DpnII	GATC	4 cut(s)	69, 329, 424, 528
Eco24I	GRGCYC	2 cut(s)	104, 706
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	266, 808
Eco88I	CYCGRG	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRI	GAATTC	3 cut(s)	220, 455, 503
EcoRII	CCWGG	1 cut(s)	243
EcoT22I	ATGCAT	1 cut(s)	526
EcoT38I	GRGCYC	2 cut(s)	104, 706
FaeI	CATG	3 cut(s)	493, 538, 869
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	3 cut(s)	489, 534, 865
Fnu4HI	GCNGC	4 cut(s)	308, 639, 650, 796
FokI	GGATG	3 cut(s)	118, 227, 269
FriOI	GRGCYC	2 cut(s)	104, 706
Fsp4HI	GCNGC	4 cut(s)	308, 639, 650, 796
FspBI	CTAG	1 cut(s)	495
GluI	GCNGC	4 cut(s)	308, 639, 650, 796
GsaI	CCCAGC	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	782
HgaI	GACGC	1 cut(s)	787
Hin1II	CATG	3 cut(s)	493, 538, 869
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	3 cut(s)	62, 377, 626
HpaII	CCGG	1 cut(s)	782
HphI	GGTGA	2 cut(s)	311, 771
Hpy166II	GTNNAC	3 cut(s)	235, 479, 736
Hpy188I	TCNGA	4 cut(s)	598, 631, 757, 827
Hpy188III	TCNNGA	5 cut(s)	7, 117, 254, 472, 508
Hpy8I	GTNNAC	3 cut(s)	235, 479, 736
HpyAV	CCTTC	4 cut(s)	25, 191, 415, 822
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	7 cut(s)	302, 367, 397, 524, 638, 773, 787
HpyF10VI	GCNNNNNNNGC	4 cut(s)	299, 547, 658, 770
HpyF3I	CTNAG	4 cut(s)	60, 326, 630, 644
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	3 cut(s)	493, 538, 869
Kzo9I	GATC	4 cut(s)	69, 329, 424, 528
LmnI	GCTCC	1 cut(s)	709
Lsp1109I	GCAGC	4 cut(s)	319, 650, 661, 782
LweI	GCATC	1 cut(s)	760
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	4 cut(s)	212, 347, 497, 831
MalI	GATC	4 cut(s)	71, 331, 426, 530
MboI	GATC	4 cut(s)	69, 329, 424, 528
MboII	GAAGA	3 cut(s)	61, 95, 578
MflI	RGATCY	2 cut(s)	329, 424
MhlI	GDGCHC	2 cut(s)	104, 706
MluCI	AATT	6 cut(s)	220, 455, 503, 556, 665, 872
MlyI	GAGTC	2 cut(s)	71, 635
Mph1103I	ATGCAT	1 cut(s)	526
MseI	TTAA	4 cut(s)	96, 204, 560, 722
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	35, 286
MspI	CCGG	1 cut(s)	782
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	4 cut(s)	299, 547, 658, 770
NdeII	GATC	4 cut(s)	69, 329, 424, 528
NlaIII	CATG	3 cut(s)	493, 538, 869
NlaIV	GGNNCC	2 cut(s)	426, 705
NmuCI	GTSAC	3 cut(s)	212, 497, 831
NsiI	ATGCAT	1 cut(s)	526
NspI	RCATGY	1 cut(s)	493
PaeR7I	CTCGAG	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	377
Pfl23II	CGTACG	1 cut(s)	727
PinAI	ACCGGT	1 cut(s)	781
PkrI	GCNGC	4 cut(s)	309, 640, 651, 797
PleI	GAGTC	2 cut(s)	70, 634
PpsI	GAGTC	2 cut(s)	70, 634
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	243
PspLI	CGTACG	1 cut(s)	727
PspN4I	GGNNCC	2 cut(s)	426, 705
PspPI	GGNCC	2 cut(s)	12, 358
PsuI	RGATCY	2 cut(s)	329, 424
PvuII	CAGCTG	2 cut(s)	35, 286
RsaI	GTAC	3 cut(s)	729, 737, 761
RsaNI	GTAC	3 cut(s)	728, 736, 760
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	4 cut(s)	96, 204, 560, 722
SatI	GCNGC	4 cut(s)	308, 639, 650, 796
Sau3AI	GATC	4 cut(s)	69, 329, 424, 528
Sau96I	GGNCC	2 cut(s)	12, 358
SchI	GAGTC	2 cut(s)	71, 635
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	2 cut(s)	104, 706
SfaNI	GCATC	1 cut(s)	760
SfcI	CTRYAG	1 cut(s)	765
Sfr274I	CTCGAG	1 cut(s)	7
SgrAI	CRCCGGYG	1 cut(s)	781
SinI	GGWCC	1 cut(s)	358
SlaI	CTCGAG	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	6 cut(s)	7, 44, 442, 461, 542, 608
SmoI	CTYRAG	6 cut(s)	7, 44, 442, 461, 542, 608
Sse9I	AATT	6 cut(s)	220, 455, 503, 556, 665, 872
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	3 cut(s)	8, 471, 531
TasI	AATT	6 cut(s)	220, 455, 503, 556, 665, 872
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	4 cut(s)	96, 204, 560, 722
Tru9I	TTAA	4 cut(s)	96, 204, 560, 722
TscAI	CASTG	2 cut(s)	421, 648
TseFI	GTSAC	3 cut(s)	212, 497, 831
TseI	GCWGC	4 cut(s)	307, 638, 649, 795
Tsp45I	GTSAC	3 cut(s)	212, 497, 831
TspDTI	ATGAA	4 cut(s)	239, 551, 741, 840
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	2 cut(s)	421, 648
VpaK11BI	GGWCC	1 cut(s)	358
XagI	CCTNNNNNAGG	1 cut(s)	195
XapI	RAATTY	4 cut(s)	220, 455, 503, 556
XceI	RCATGY	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	7
XspI	CTAG	1 cut(s)	495
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.