Rorug03G0195200

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001584
Physical Location & Seq
Forward (+)
17175719 .. 17179504
3786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0195200.1

Sequence Viewer

Length: 219 bp
ATGGATTCAGTGACTCGCAGAAGCGGTGGTGGCCTCTTCGAAGGTCTTTACAGGGTCGTCATGCGCCGCAACTCCGTCTACGTCACCTTCGTCATCGCCGGCGCCTTCCTCGGCGAGCGGGCTGTGGATTATGGAGTTCATAAGCTGTGGGAGTACAACAATGTTGGGAAACGATATGAGGACATCTCAGTTTTGGGGCAAAGGCCAGTTGAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05010 map05010
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

72

Amino Acids

8.21

Weight (kDa)

8.09

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_UQCRX_QCR9 PF05365 15 - 63 1.8e-21 Cytochrome b-c1 complex subunit 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccBSI CCGCTC 1 cut(s) 118
AccI GTMKAC 1 cut(s) 78
AciI CCGC 3 cut(s) 24, 67, 118
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 155
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
AoxI GGCC 2 cut(s) 31, 203
AspLEI GCGC 2 cut(s) 66, 104
AsuHPI GGTGA 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 39
BanI GGYRCC 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 105
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 103
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu14I TTCGAA 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 206
BshFI GGCC 2 cut(s) 33, 205
BshNI GGYRCC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 99
BsnI GGCC 2 cut(s) 33, 205
Bsp119I TTCGAA 1 cut(s) 39
BspACI CCGC 3 cut(s) 24, 67, 118
BspANI GGCC 2 cut(s) 33, 205
BspCNI CTCAG 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 101
BsrBI CCGCTC 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 109
BssNI GRCGYC 1 cut(s) 102
Bst6I CTCTTC 2 cut(s) 41, 207
BstACI GRCGYC 1 cut(s) 102
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 3 cut(s) 100, 116, 120
BstDEI CTNAG 1 cut(s) 187
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 2 cut(s) 66, 104
BstMWI GCNNNNNNNGC 1 cut(s) 30
BsuRI GGCC 2 cut(s) 33, 205
BtgZI GCGATG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 3 cut(s) 100, 116, 120
CfoI GCGC 2 cut(s) 66, 104
Cfr10I RCCGGY 1 cut(s) 98
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 61
CviJI RGCY 4 cut(s) 33, 122, 145, 205
CviKI_1 RGCY 4 cut(s) 33, 122, 145, 205
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 187
DinI GGCGCC 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 41, 207
EarI CTCTTC 2 cut(s) 41, 207
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 62, 132, 141, 177
FatI CATG 1 cut(s) 60
FauI CCCGC 1 cut(s) 111
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 67
GlaI GCGC 2 cut(s) 65, 103
GluI GCNGC 1 cut(s) 67
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 2 cut(s) 33, 205
HapII CCGG 1 cut(s) 99
HhaI GCGC 2 cut(s) 66, 104
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 2 cut(s) 64, 102
HinP1I GCGC 2 cut(s) 64, 102
HinfI GANTC 2 cut(s) 5, 13
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 3 cut(s) 35, 97, 115
HpyCH4IV ACGT 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 1 cut(s) 187
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 2 cut(s) 64, 102
KasI GGCGCC 1 cut(s) 101
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
LpnPI CCDG 2 cut(s) 37, 112
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 10, 82
MbiI CCGCTC 1 cut(s) 118
MboII GAAGA 1 cut(s) 28
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 1 cut(s) 7
MnlI CCTC 3 cut(s) 44, 119, 172
MreI CGCCGGCG 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 98
MspI CCGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 30
NaeI GCCGGC 1 cut(s) 100
NarI GGCGCC 1 cut(s) 102
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 103
NmeAIII GCCGAG 1 cut(s) 90
NmuCI GTSAC 2 cut(s) 10, 82
NspV TTCGAA 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 68
PleI GAGTC 1 cut(s) 7
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 103
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 1 cut(s) 67
SchI GAGTC 1 cut(s) 7
SetI ASST 4 cut(s) 46, 84, 89, 147
SfoI GGCGCC 1 cut(s) 103
SfuI TTCGAA 1 cut(s) 39
SgeI CNNG 7 cut(s) 27, 64, 73, 111, 122, 127, 131
SgrAI CRCCGGYG 1 cut(s) 98
SsiI CCGC 3 cut(s) 24, 67, 118
SspDI GGCGCC 1 cut(s) 101
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 39
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 1 cut(s) 5
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 2 cut(s) 10, 82
Tsp45I GTSAC 2 cut(s) 10, 82
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 1 cut(s) 15
XmiI GTMKAC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.