MD14G1007900.v1.1

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000556
Physical Location & Seq
Forward (+)
798506 .. 799564
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1007900.v1.1.491

Sequence Viewer

Length: 1059 bp
ATGATGACAAATGTTAGTCTCATTGATCTTTCATTATTTCTGTTGTTAATATTTCATTTCTCTCAAAATCCAACGGCGGACGCTGCCGGTGGCAAATGGCAAGTGTTGAAGAACGTTGGCATTTCCGCCATGCACATGCAGCTCTTAAAAAACGACCGCATCATCCTCTTCGACCGCACCGACTTCGGCAAATCCAACTTGTCATTACCCAACGGTAACTGCGTCAACAACGACTGCACCGCCCACTCCGCAGAGTTCACCGTCCAAACCAATGCCGTCCGCCCCCTCACCGTCTTATCCGACGTCTGGTGCTCCTCCGGCTCCATGGCCCCCAACGGTAACTTAATCCAAACCGGCGGCTTCAACGGTGGAGAGCGCCGCGTCAGGGTTTTCCAACCGTGCACGGGTTGTGATTGGAAGGAGATTGTGGACGGCGTAAACGTGCGCCGTTGGTACGCCACCAATCATGTTCTGCCCGACGGACGGCAGATAATCGTCGGCGGCAGGAGGCAGTTCAACTACGAGTTTTATCCCAAGACGCCATCGTCTAGCAGCGTCTACAGTTTACCGTTCCTTTCGCAGACCAACGATGCCGGCGAGGAAAATAATCTCTACCCTTTTGTTTTTCTCAACCCCGACGGCAACTTATTTATTTTCGCCAACAACCGAGCTATTCTGTTCAATTATGTGAACAACACTGTCGTTAAAAGCTACCCGCAAATACCTGGTGGCGACCCCAGGTCGTACCCCAGCACCGGTTCAGCCGTGTTGCTGCCGTTGAAGAACTTGACGGCTCCGTCGGTTGAGGCTGAGGTTTTGATCTGCGGTGGAACTCCAAAAGGATCTTACACCAAGGCAACAAACGGTACTTTTGTCGGAGCTCTAAACACATGCGCTCGGATCAAAATAACTGATCCGAACCCGCAGTGGGTTGTTGAGACTATGCCTCAAGCTAGAGTCATGGGAGACATGAGATTGCTCACCGACTGCACTGCTTCGAATAGTAATGGTGCAGCGGTTGTGACTGCGGGTTGGGAATTCAACACAACCCGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

353

Amino Acids

38.53

Weight (kDa)

8.09

Isoelectric Point (pI)

29.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 44 - 348 1.7e-131 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 544, 796
AatII GACGTC 1 cut(s) 306
AccI GTMKAC 1 cut(s) 558
AccII CGCG 1 cut(s) 381
AclI AACGTT 1 cut(s) 114
AclWI GGATC 3 cut(s) 850, 908, 908
AcsI RAATTY 1 cut(s) 1037
AcyI GRCGYC 2 cut(s) 303, 539
AfaI GTAC 3 cut(s) 455, 746, 868
AfiI CCNNNNNNNGG 6 cut(s) 306, 385, 404, 483, 755, 928
AgeI ACCGGT 1 cut(s) 755
AgsI TTSAA 6 cut(s) 109, 364, 517, 682, 781, 1042
AhdI GACNNNNNGTC 1 cut(s) 739
AjnI CCWGG 2 cut(s) 724, 737
AluBI AGCT 5 cut(s) 142, 671, 711, 881, 953
AluI AGCT 5 cut(s) 142, 671, 711, 881, 953
Alw21I GWGCWC 3 cut(s) 314, 404, 883
Alw26I GTCTC 3 cut(s) 23, 932, 960
Alw44I GTGCAC 1 cut(s) 400
AlwI GGATC 3 cut(s) 850, 908, 908
AoxI GGCC 1 cut(s) 327
ApaLI GTGCAC 1 cut(s) 400
ApeKI GCWGC 5 cut(s) 83, 139, 552, 772, 1013
ApoI RAATTY 1 cut(s) 1037
AsiGI ACCGGT 1 cut(s) 755
AspLEI GCGC 3 cut(s) 378, 447, 896
AspS9I GGNCC 1 cut(s) 328
AsuC2I CCSGG 1 cut(s) 1051
AsuHPI GGTGA 3 cut(s) 250, 280, 973
AsuII TTCGAA 1 cut(s) 998
BaeGI GKGCMC 1 cut(s) 404
BaeI ACNNNNGTAYC 2 cut(s) 858, 891
BanII GRGCYC 1 cut(s) 883
Bbv12I GWGCWC 3 cut(s) 314, 404, 883
BbvCI CCTCAGC 1 cut(s) 810
BbvI GCAGC 5 cut(s) 70, 151, 564, 759, 1025
BccI CCATC 1 cut(s) 550
BceAI ACGGC 9 cut(s) 90, 260, 432, 448, 500, 655, 749, 760, 807
BcgI CGANNNNNNTGC 4 cut(s) 166, 200, 974, 1008
BciT130I CCWGG 2 cut(s) 726, 739
BcnI CCSGG 1 cut(s) 1051
BcoDI GTCTC 3 cut(s) 23, 932, 960
BfaI CTAG 2 cut(s) 549, 954
BfmI CTRYAG 1 cut(s) 559
BfoI RGCGCY 1 cut(s) 379
BisI GCNGC 8 cut(s) 84, 140, 358, 379, 502, 553, 773, 1014
BlsI GCNGC 8 cut(s) 85, 141, 359, 380, 503, 554, 774, 1015
Bme1390I CCNGG 3 cut(s) 726, 739, 1051
BmeRI GACNNNNNGTC 1 cut(s) 739
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 3 cut(s) 322, 330, 795
BmrFI CCNGG 3 cut(s) 726, 739, 1051
BmsI GCATC 2 cut(s) 168, 580
Bpu10I CCTNAGC 1 cut(s) 810
Bpu14I TTCGAA 1 cut(s) 998
BpuEI CTTGAG 1 cut(s) 933
BpuMI CCSGG 1 cut(s) 1051
BsaHI GRCGYC 2 cut(s) 303, 539
BsaJI CCNNGG 3 cut(s) 324, 737, 852
BsaWI WCCGGW 1 cut(s) 755
Bsc4I CCNNNNNNNGG 6 cut(s) 306, 385, 404, 483, 755, 928
Bse118I RCCGGY 4 cut(s) 86, 353, 593, 755
BseBI CCWGG 2 cut(s) 726, 739
BseDI CCNNGG 3 cut(s) 324, 737, 852
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 6 cut(s) 306, 385, 404, 483, 755, 928
BseMII CTCAG 1 cut(s) 801
BseRI GAGGAG 1 cut(s) 304
BseSI GKGCMC 1 cut(s) 404
BseXI GCAGC 5 cut(s) 70, 151, 564, 759, 1025
BseYI CCCAGC 1 cut(s) 749
BsgI GTGCAG 3 cut(s) 220, 973, 1032
Bsh1236I CGCG 1 cut(s) 381
Bsh1285I CGRYCG 2 cut(s) 157, 175
BshFI GGCC 1 cut(s) 329
BshTI ACCGGT 1 cut(s) 755
BsiEI CGRYCG 2 cut(s) 157, 175
BsiHKAI GWGCWC 3 cut(s) 314, 404, 883
BsiSI CCGG 6 cut(s) 87, 318, 354, 594, 756, 1051
BslI CCNNNNNNNGG 6 cut(s) 306, 385, 404, 483, 755, 928
BsmAI GTCTC 3 cut(s) 23, 932, 960
BsnI GGCC 1 cut(s) 329
Bsp119I TTCGAA 1 cut(s) 998
Bsp1286I GDGCHC 3 cut(s) 314, 404, 883
Bsp143I GATC 5 cut(s) 25, 819, 842, 900, 913
Bsp19I CCATGG 1 cut(s) 324
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 802
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 3 cut(s) 322, 330, 795
BspPI GGATC 3 cut(s) 850, 908, 908
BspT104I TTCGAA 1 cut(s) 998
BsrFI RCCGGY 4 cut(s) 86, 353, 593, 755
BssAI RCCGGY 4 cut(s) 86, 353, 593, 755
BssECI CCNNGG 3 cut(s) 324, 737, 852
BssMI GATC 5 cut(s) 25, 819, 842, 900, 913
BssNI GRCGYC 2 cut(s) 303, 539
BssT1I CCWWGG 2 cut(s) 324, 852
Bst2UI CCWGG 2 cut(s) 726, 739
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 2 cut(s) 303, 539
BstBI TTCGAA 1 cut(s) 998
BstC8I GCNNGC 1 cut(s) 595
BstDEI CTNAG 1 cut(s) 810
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 381
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 3 cut(s) 378, 447, 896
BstKTI GATC 5 cut(s) 28, 822, 845, 903, 916
BstMAI GTCTC 3 cut(s) 23, 932, 960
BstMBI GATC 5 cut(s) 25, 819, 842, 900, 913
BstMCI CGRYCG 2 cut(s) 157, 175
BstMWI GCNNNNNNNGC 4 cut(s) 83, 139, 248, 318
BstNI CCWGG 2 cut(s) 726, 739
BstNSI RCATGY 2 cut(s) 139, 894
BstSCI CCNGG 3 cut(s) 724, 737, 1049
BstSFI CTRYAG 1 cut(s) 559
BstSLI GKGCMC 1 cut(s) 404
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 5 cut(s) 70, 151, 564, 759, 1025
BstX2I RGATCY 1 cut(s) 842
BstYI RGATCY 1 cut(s) 842
BsuRI GGCC 1 cut(s) 329
BtgI CCRYGG 1 cut(s) 324
BtsCI GGATG 1 cut(s) 162
BtsI GCAGTG 2 cut(s) 932, 990
BtsIMutI CAGTG 3 cut(s) 696, 932, 990
Cac8I GCNNGC 1 cut(s) 595
CfoI GCGC 3 cut(s) 378, 447, 896
Cfr10I RCCGGY 4 cut(s) 86, 353, 593, 755
Cfr13I GGNCC 1 cut(s) 328
CseI GACGC 5 cut(s) 89, 211, 370, 544, 547
CsiI ACCWGGT 1 cut(s) 724
Csp6I GTAC 3 cut(s) 454, 745, 867
CspAI ACCGGT 1 cut(s) 755
CviAII CATG 7 cut(s) 130, 136, 325, 467, 891, 961, 970
CviQI GTAC 3 cut(s) 454, 745, 867
DdeI CTNAG 1 cut(s) 810
DpnI GATC 5 cut(s) 27, 821, 844, 902, 915
DpnII GATC 5 cut(s) 25, 819, 842, 900, 913
DrdI GACNNNNNNGTC 2 cut(s) 544, 796
DriI GACNNNNNGTC 1 cut(s) 739
DseDI GACNNNNNNGTC 2 cut(s) 544, 796
Eam1104I CTCTTC 1 cut(s) 173
Eam1105I GACNNNNNGTC 1 cut(s) 739
EarI CTCTTC 1 cut(s) 173
EciI GGCGGA 3 cut(s) 92, 115, 269
Ecl136II GAGCTC 1 cut(s) 881
Eco130I CCWWGG 2 cut(s) 324, 852
Eco24I GRGCYC 1 cut(s) 883
Eco53kI GAGCTC 1 cut(s) 881
EcoICRI GAGCTC 1 cut(s) 881
EcoRI GAATTC 1 cut(s) 1037
EcoRII CCWGG 2 cut(s) 724, 737
EcoT14I CCWWGG 2 cut(s) 324, 852
EcoT38I GRGCYC 1 cut(s) 883
ErhI CCWWGG 2 cut(s) 324, 852
FaeI CATG 7 cut(s) 133, 139, 328, 470, 894, 964, 973
FaiI YATR 9 cut(s) 131, 137, 326, 468, 687, 892, 944, 962, 971
FatI CATG 7 cut(s) 129, 135, 324, 466, 890, 960, 969
FauI CCCGC 3 cut(s) 723, 930, 1021
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 8 cut(s) 84, 140, 358, 379, 502, 553, 773, 1014
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 883
Fsp4HI GCNGC 8 cut(s) 84, 140, 358, 379, 502, 553, 773, 1014
FspBI CTAG 2 cut(s) 549, 954
GlaI GCGC 3 cut(s) 377, 446, 895
GluI GCNGC 8 cut(s) 84, 140, 358, 379, 502, 553, 773, 1014
GsaI CCCAGC 1 cut(s) 753
HaeII RGCGCY 1 cut(s) 379
HaeIII GGCC 1 cut(s) 329
HapII CCGG 6 cut(s) 87, 318, 354, 594, 756, 1051
HgaI GACGC 5 cut(s) 89, 211, 370, 544, 547
HhaI GCGC 3 cut(s) 378, 447, 896
Hin1I GRCGYC 2 cut(s) 303, 539
Hin1II CATG 7 cut(s) 133, 139, 328, 470, 894, 964, 973
Hin6I GCGC 3 cut(s) 376, 445, 894
HinP1I GCGC 3 cut(s) 376, 445, 894
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 1 cut(s) 957
HpaII CCGG 6 cut(s) 87, 318, 354, 594, 756, 1051
HphI GGTGA 3 cut(s) 250, 280, 973
Hpy166II GTNNAC 8 cut(s) 226, 258, 402, 430, 439, 559, 566, 691
Hpy188I TCNGA 5 cut(s) 301, 878, 900, 918, 1058
Hpy8I GTNNAC 8 cut(s) 226, 258, 402, 430, 439, 559, 566, 691
Hpy99I CGWCG 5 cut(s) 305, 482, 500, 641, 802
HpyAV CCTTC 1 cut(s) 412
HpyCH4IV ACGT 3 cut(s) 114, 303, 441
HpyCH4V TGCA 6 cut(s) 133, 139, 237, 402, 990, 1013
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 139, 248, 318
HpyF3I CTNAG 1 cut(s) 810
HpySE526I ACGT 3 cut(s) 114, 303, 441
Hsp92I GRCGYC 2 cut(s) 303, 539
Hsp92II CATG 7 cut(s) 133, 139, 328, 470, 894, 964, 973
HspAI GCGC 3 cut(s) 376, 445, 894
KroI GCCGGC 1 cut(s) 593
KroNI GCCGGC 1 cut(s) 595
Kzo9I GATC 5 cut(s) 25, 819, 842, 900, 913
LmnI GCTCC 4 cut(s) 317, 326, 799, 878
Lsp1109I GCAGC 5 cut(s) 70, 151, 564, 759, 1025
LweI GCATC 2 cut(s) 168, 580
MabI ACCWGGT 1 cut(s) 724
MaeI CTAG 2 cut(s) 549, 954
MaeII ACGT 3 cut(s) 114, 303, 441
MaeIII GTNAC 3 cut(s) 215, 338, 1021
MalI GATC 5 cut(s) 27, 821, 844, 902, 915
MboI GATC 5 cut(s) 25, 819, 842, 900, 913
MboII GAAGA 3 cut(s) 121, 160, 793
MflI RGATCY 1 cut(s) 842
MhlI GDGCHC 3 cut(s) 314, 404, 883
MluCI AATT 2 cut(s) 682, 1037
MlyI GAGTC 1 cut(s) 966
MmeI TCCRAC 5 cut(s) 95, 219, 324, 418, 856
MnlI CCTC 8 cut(s) 176, 296, 325, 501, 592, 799, 805, 957
MroNI GCCGGC 1 cut(s) 593
MseI TTAA 4 cut(s) 47, 146, 344, 705
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 1016
MspI CCGG 6 cut(s) 87, 318, 354, 594, 756, 1051
MspR9I CCNGG 3 cut(s) 726, 739, 1051
MvaI CCWGG 2 cut(s) 726, 739
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 4 cut(s) 83, 139, 248, 318
NaeI GCCGGC 1 cut(s) 595
NciI CCSGG 1 cut(s) 1051
NcoI CCATGG 1 cut(s) 324
NdeII GATC 5 cut(s) 25, 819, 842, 900, 913
NgoMIV GCCGGC 1 cut(s) 593
NlaIII CATG 7 cut(s) 133, 139, 328, 470, 894, 964, 973
NlaIV GGNNCC 3 cut(s) 322, 330, 795
NmuCI GTSAC 1 cut(s) 1021
NspI RCATGY 2 cut(s) 139, 894
NspV TTCGAA 1 cut(s) 998
PcsI WCGNNNNNNNCGW 4 cut(s) 177, 219, 438, 594
PdiI GCCGGC 1 cut(s) 595
PinAI ACCGGT 1 cut(s) 755
PkrI GCNGC 8 cut(s) 85, 141, 359, 380, 503, 554, 774, 1015
PleI GAGTC 1 cut(s) 965
PpsI GAGTC 1 cut(s) 965
Psp124BI GAGCTC 1 cut(s) 883
Psp1406I AACGTT 1 cut(s) 114
Psp6I CCWGG 2 cut(s) 724, 737
PspFI CCCAGC 1 cut(s) 749
PspGI CCWGG 2 cut(s) 724, 737
PspN4I GGNNCC 3 cut(s) 322, 330, 795
PspPI GGNCC 1 cut(s) 328
PsuI RGATCY 1 cut(s) 842
RsaI GTAC 3 cut(s) 455, 746, 868
RsaNI GTAC 3 cut(s) 454, 745, 867
RseI CAYNNNNRTG 1 cut(s) 134
SacI GAGCTC 1 cut(s) 883
SaqAI TTAA 4 cut(s) 47, 146, 344, 705
SatI GCNGC 8 cut(s) 84, 140, 358, 379, 502, 553, 773, 1014
Sau3AI GATC 5 cut(s) 25, 819, 842, 900, 913
Sau96I GGNCC 1 cut(s) 328
SchI GAGTC 1 cut(s) 966
ScrFI CCNGG 3 cut(s) 726, 739, 1051
SduI GDGCHC 3 cut(s) 314, 404, 883
SexAI ACCWGGT 1 cut(s) 724
SfaNI GCATC 2 cut(s) 168, 580
SfcI CTRYAG 1 cut(s) 559
SfuI TTCGAA 1 cut(s) 998
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 948
SmoI CTYRAG 1 cut(s) 948
Sse9I AATT 2 cut(s) 682, 1037
SspI AATATT 1 cut(s) 51
SspMI CTAG 2 cut(s) 549, 954
SstI GAGCTC 1 cut(s) 883
StyD4I CCNGG 3 cut(s) 724, 737, 1049
StyI CCWWGG 2 cut(s) 324, 852
TaiI ACGT 3 cut(s) 117, 306, 444
TaqI TCGA 2 cut(s) 171, 998
TasI AATT 2 cut(s) 682, 1037
TauI GCSGC 3 cut(s) 360, 381, 504
Tru1I TTAA 4 cut(s) 47, 146, 344, 705
Tru9I TTAA 4 cut(s) 47, 146, 344, 705
TscAI CASTG 3 cut(s) 703, 932, 997
TseFI GTSAC 1 cut(s) 1021
TseI GCWGC 5 cut(s) 83, 139, 552, 772, 1013
Tsp45I GTSAC 1 cut(s) 1021
TspDTI ATGAA 2 cut(s) 21, 44
TspGWI ACGGA 2 cut(s) 495, 786
TspRI CASTG 3 cut(s) 703, 932, 997
VneI GTGCAC 1 cut(s) 400
XapI RAATTY 1 cut(s) 1037
XceI RCATGY 2 cut(s) 139, 894
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 2 cut(s) 549, 954
ZraI GACGTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.