Rmu_co8367879.1_g000001

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8367879.1
OG0000556
Physical Location & Seq
Forward (+)
1 .. 913
913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8367879.1_g000001.1.cds

Sequence Viewer

Length: 811 bp
gagcgaagcagccggtggccaatggcaattgctgcaagagagcattggcattgcggcaatgctcatgcaactattccacactgacggtcagtcgtcattttcgaccgcaccgacttcggcgtatccaaactctcactccccggccgatgggaaatgtcgcttcgaccccgacgacactgcgctcataatcgactgcagcgcacattcagctgaatacgacgttgccaacaattccattcgacctcttatggtgcaaactgatgtctggcgctcctctgactcggcaatgctggacagtcgtctagtccagactggtggttataatgatggagaacgtagggtcaagtttttcgagtcttgtccgaattatgattggcatgagattgagtacggtttagccgctccgcgatggtactcaaccaatcacattctgccagatggccaagagatcattatcggagaccggggacagttcaactatgagttctatcccaaaactgaatctactcagaacgtgtacaattttccaacaacattgttaaaacgtaccctcagatacctggtggcaattcgaggtcttatccgagcaccggcaatgaatgggacttttgtaggagctttaagaacttgtgctcggatcaaaataaccgacccgaatccagaatgggttgtggagactatgccactggctagagtcatgagtgatatgacattgctcccaaatggtgaagtgttgagtggagctgcagggacagcgggatgggaaatcggtcgtaaaacctattttgaatccagttcttcacacacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

269

Amino Acids

29.88

Weight (kDa)

5.14

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 322
AccBSI CCGCTC 1 cut(s) 402
AccII CGCG 1 cut(s) 407
AciI CCGC 5 cut(s) 54, 106, 400, 405, 756
AclWI GGATC 1 cut(s) 645
AcoI YGGCCR 3 cut(s) 17, 142, 440
AfaI GTAC 4 cut(s) 390, 414, 519, 548
AfiI CCNNNNNNNGG 2 cut(s) 147, 590
AflIII ACRYGT 1 cut(s) 514
AgsI TTSAA 2 cut(s) 476, 789
AhdI GACNNNNNGTC 1 cut(s) 89
AjnI CCWGG 1 cut(s) 559
AluBI AGCT 3 cut(s) 210, 618, 744
AluI AGCT 3 cut(s) 210, 618, 744
Alw21I GWGCWC 2 cut(s) 590, 635
Alw26I GTCTC 2 cut(s) 454, 669
AlwI GGATC 1 cut(s) 645
AoxI GGCC 3 cut(s) 17, 142, 440
ApeKI GCWGC 4 cut(s) 9, 32, 196, 744
AspLEI GCGC 3 cut(s) 182, 201, 271
AsuC2I CCSGG 2 cut(s) 141, 465
AsuHPI GGTGA 1 cut(s) 738
BalI TGGCCA 2 cut(s) 19, 442
Bbv12I GWGCWC 2 cut(s) 590, 635
BbvI GCAGC 4 cut(s) 19, 21, 208, 731
BccI CCATC 5 cut(s) 141, 321, 403, 432, 754
BcgI CGANNNNNNTGC 4 cut(s) 97, 131, 159, 193
BciT130I CCWGG 1 cut(s) 561
BciVI GTATCC 1 cut(s) 133
BcnI CCSGG 2 cut(s) 141, 465
BcoDI GTCTC 2 cut(s) 454, 669
BfaI CTAG 2 cut(s) 303, 691
BfmI CTRYAG 2 cut(s) 194, 745
BfoI RGCGCY 1 cut(s) 272
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 6 cut(s) 10, 33, 55, 197, 400, 745
BlsI GCNGC 6 cut(s) 11, 34, 56, 198, 401, 746
Bme1390I CCNGG 3 cut(s) 141, 465, 561
BmeRI GACNNNNNGTC 1 cut(s) 89
BmrFI CCNGG 3 cut(s) 141, 465, 561
BoxI GACNNNNGTC 1 cut(s) 298
BpuMI CCSGG 2 cut(s) 141, 465
BsaBI GATNNNNATC 1 cut(s) 453
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 139, 464
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 590
Bse118I RCCGGY 2 cut(s) 12, 590
Bse1I ACTGG 3 cut(s) 317, 691, 793
Bse3DI GCAATG 5 cut(s) 49, 64, 292, 601, 711
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 2 cut(s) 139, 464
BseGI GGATG 1 cut(s) 765
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 2 cut(s) 147, 590
BseMI GCAATG 5 cut(s) 49, 64, 292, 601, 711
BseMII CTCAG 2 cut(s) 522, 566
BseNI ACTGG 3 cut(s) 317, 691, 793
BseRI GAGGAG 1 cut(s) 263
BseX3I CGGCCG 1 cut(s) 142
BseXI GCAGC 4 cut(s) 19, 21, 208, 731
Bsh1236I CGCG 1 cut(s) 407
Bsh1285I CGRYCG 3 cut(s) 106, 145, 773
BshFI GGCC 3 cut(s) 19, 144, 442
BsiEI CGRYCG 3 cut(s) 106, 145, 773
BsiHKAI GWGCWC 2 cut(s) 590, 635
BsiSI CCGG 4 cut(s) 13, 141, 464, 591
BslFI GGGAC 3 cut(s) 481, 617, 764
BslI CCNNNNNNNGG 2 cut(s) 147, 590
BsmAI GTCTC 2 cut(s) 454, 669
BsmFI GGGAC 3 cut(s) 481, 617, 764
BsnI GGCC 3 cut(s) 19, 144, 442
Bso31I GGTCTC 1 cut(s) 454
Bsp1286I GDGCHC 2 cut(s) 590, 635
Bsp1407I TGTACA 1 cut(s) 517
Bsp143I GATC 2 cut(s) 448, 637
BspACI CCGC 5 cut(s) 54, 106, 400, 405, 756
BspANI GGCC 3 cut(s) 19, 144, 442
BspCNI CTCAG 2 cut(s) 521, 565
BspFNI CGCG 1 cut(s) 407
BspHI TCATGA 1 cut(s) 697
BspMAI CTGCAG 2 cut(s) 198, 749
BspPI GGATC 1 cut(s) 645
BspTNI GGTCTC 1 cut(s) 454
BsrBI CCGCTC 1 cut(s) 402
BsrDI GCAATG 5 cut(s) 49, 64, 292, 601, 711
BsrFI RCCGGY 2 cut(s) 12, 590
BsrGI TGTACA 1 cut(s) 517
BsrI ACTGG 3 cut(s) 317, 691, 793
BssAI RCCGGY 2 cut(s) 12, 590
BssECI CCNNGG 2 cut(s) 139, 464
BssMI GATC 2 cut(s) 448, 637
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 4 cut(s) 87, 297, 393, 472
BstAPI GCANNNNNTGC 1 cut(s) 32
BstAUI TGTACA 1 cut(s) 517
BstDEI CTNAG 2 cut(s) 508, 552
BstF5I GGATG 1 cut(s) 765
BstFNI CGCG 1 cut(s) 407
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 3 cut(s) 182, 201, 271
BstKTI GATC 2 cut(s) 451, 640
BstMAI GTCTC 2 cut(s) 454, 669
BstMBI GATC 2 cut(s) 448, 637
BstMCI CGRYCG 3 cut(s) 106, 145, 773
BstMWI GCNNNNNNNGC 3 cut(s) 32, 207, 753
BstNI CCWGG 1 cut(s) 561
BstPAI GACNNNNGTC 1 cut(s) 298
BstSCI CCNGG 3 cut(s) 139, 463, 559
BstSFI CTRYAG 2 cut(s) 194, 745
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 4 cut(s) 19, 21, 208, 731
BstXI CCANNNNNNTGG 1 cut(s) 315
BstZI CGGCCG 1 cut(s) 142
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 3 cut(s) 19, 144, 442
BtgZI GCGATG 1 cut(s) 422
BtsCI GGATG 1 cut(s) 765
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 3 cut(s) 79, 175, 684
CciI TCATGA 1 cut(s) 697
CfoI GCGC 3 cut(s) 182, 201, 271
Cfr10I RCCGGY 2 cut(s) 12, 590
CsiI ACCWGGT 1 cut(s) 559
Csp6I GTAC 4 cut(s) 389, 413, 518, 547
CviAII CATG 3 cut(s) 65, 378, 698
CviJI RGCY 9 cut(s) 12, 19, 144, 210, 399, 442, 618, 690, 744
CviKI_1 RGCY 9 cut(s) 12, 19, 144, 210, 399, 442, 618, 690, 744
CviQI GTAC 4 cut(s) 389, 413, 518, 547
DdeI CTNAG 2 cut(s) 508, 552
DpnI GATC 2 cut(s) 450, 639
DpnII GATC 2 cut(s) 448, 637
DriI GACNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 3 cut(s) 17, 142, 440
EagI CGGCCG 1 cut(s) 142
Eam1105I GACNNNNNGTC 1 cut(s) 89
EclXI CGGCCG 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 454
Eco52I CGGCCG 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 559
FaeI CATG 3 cut(s) 68, 381, 701
FaqI GGGAC 3 cut(s) 481, 617, 764
FatI CATG 3 cut(s) 64, 377, 697
FauI CCCGC 1 cut(s) 749
Fnu4HI GCNGC 6 cut(s) 10, 33, 55, 197, 400, 745
FokI GGATG 1 cut(s) 772
Fsp4HI GCNGC 6 cut(s) 10, 33, 55, 197, 400, 745
FspBI CTAG 2 cut(s) 303, 691
GlaI GCGC 3 cut(s) 181, 200, 270
GluI GCNGC 6 cut(s) 10, 33, 55, 197, 400, 745
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 3 cut(s) 19, 144, 442
HapII CCGG 4 cut(s) 13, 141, 464, 591
HhaI GCGC 3 cut(s) 182, 201, 271
Hin1II CATG 3 cut(s) 68, 381, 701
Hin6I GCGC 3 cut(s) 180, 199, 269
HinP1I GCGC 3 cut(s) 180, 199, 269
HinfI GANTC 6 cut(s) 279, 354, 501, 656, 694, 789
HpaII CCGG 4 cut(s) 13, 141, 464, 591
HphI GGTGA 1 cut(s) 738
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 7 cut(s) 278, 364, 459, 511, 555, 585, 637
Hpy188III TCNNGA 3 cut(s) 308, 660, 698
Hpy8I GTNNAC 1 cut(s) 518
Hpy99I CGWCG 2 cut(s) 174, 222
HpyCH4III ACNGT 4 cut(s) 87, 297, 393, 472
HpyCH4IV ACGT 4 cut(s) 220, 335, 514, 545
HpyCH4V TGCA 5 cut(s) 35, 68, 196, 254, 747
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 207, 753
HpyF3I CTNAG 2 cut(s) 508, 552
HpySE526I ACGT 4 cut(s) 220, 335, 514, 545
Hsp92II CATG 3 cut(s) 68, 381, 701
HspAI GCGC 3 cut(s) 180, 199, 269
Kzo9I GATC 2 cut(s) 448, 637
LmnI GCTCC 5 cut(s) 276, 407, 615, 721, 741
Lsp1109I GCAGC 4 cut(s) 19, 21, 208, 731
MabI ACCWGGT 1 cut(s) 559
MaeI CTAG 2 cut(s) 303, 691
MaeII ACGT 4 cut(s) 220, 335, 514, 545
MalI GATC 2 cut(s) 450, 639
MbiI CCGCTC 1 cut(s) 402
MboI GATC 2 cut(s) 448, 637
MboII GAAGA 1 cut(s) 790
MfeI CAATTG 1 cut(s) 27
MhlI GDGCHC 2 cut(s) 590, 635
MlsI TGGCCA 2 cut(s) 19, 442
MluCI AATT 5 cut(s) 27, 230, 365, 521, 568
MluNI TGGCCA 2 cut(s) 19, 442
MlyI GAGTC 3 cut(s) 273, 363, 703
MmeI TCCRAC 1 cut(s) 552
MnlI CCTC 4 cut(s) 253, 284, 561, 567
Mox20I TGGCCA 2 cut(s) 19, 442
MscI TGGCCA 2 cut(s) 19, 442
MseI TTAA 2 cut(s) 540, 621
Msp20I TGGCCA 2 cut(s) 19, 442
MspA1I CMGCKG 2 cut(s) 210, 756
MspI CCGG 4 cut(s) 13, 141, 464, 591
MspR9I CCNGG 3 cut(s) 141, 465, 561
MunI CAATTG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 561
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 3 cut(s) 32, 207, 753
NciI CCSGG 2 cut(s) 141, 465
NdeII GATC 2 cut(s) 448, 637
NlaIII CATG 3 cut(s) 68, 381, 701
NmeAIII GCCGAG 1 cut(s) 261
PagI TCATGA 1 cut(s) 697
PcsI WCGNNNNNNNCGW 3 cut(s) 99, 108, 169
PfeI GAWTC 3 cut(s) 501, 656, 789
PkrI GCNGC 6 cut(s) 11, 34, 56, 198, 401, 746
PleI GAGTC 3 cut(s) 273, 362, 702
PpsI GAGTC 3 cut(s) 273, 362, 702
PshAI GACNNNNGTC 1 cut(s) 298
PsiI TTATAA 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 559
PstI CTGCAG 2 cut(s) 198, 749
PvuII CAGCTG 1 cut(s) 210
RsaI GTAC 4 cut(s) 390, 414, 519, 548
RsaNI GTAC 4 cut(s) 389, 413, 518, 547
SaqAI TTAA 2 cut(s) 540, 621
SatI GCNGC 6 cut(s) 10, 33, 55, 197, 400, 745
Sau3AI GATC 2 cut(s) 448, 637
SchI GAGTC 3 cut(s) 273, 363, 703
ScrFI CCNGG 3 cut(s) 141, 465, 561
SduI GDGCHC 2 cut(s) 590, 635
SexAI ACCWGGT 1 cut(s) 559
SfcI CTRYAG 2 cut(s) 194, 745
Sse9I AATT 5 cut(s) 27, 230, 365, 521, 568
SsiI CCGC 5 cut(s) 54, 106, 400, 405, 756
SspMI CTAG 2 cut(s) 303, 691
StyD4I CCNGG 3 cut(s) 139, 463, 559
TaaI ACNGT 4 cut(s) 87, 297, 393, 472
TaiI ACGT 4 cut(s) 223, 338, 517, 548
TaqI TCGA 6 cut(s) 102, 163, 190, 239, 352, 572
TaqII GACCGA 1 cut(s) 759
TasI AATT 5 cut(s) 27, 230, 365, 521, 568
TatI WGTACW 1 cut(s) 517
TauI GCSGC 2 cut(s) 57, 402
TfiI GAWTC 3 cut(s) 501, 656, 789
Tru1I TTAA 2 cut(s) 540, 621
Tru9I TTAA 2 cut(s) 540, 621
TscAI CASTG 3 cut(s) 86, 182, 691
TseI GCWGC 4 cut(s) 9, 32, 196, 744
TspDTI ATGAA 1 cut(s) 612
TspRI CASTG 3 cut(s) 86, 182, 691
XspI CTAG 2 cut(s) 303, 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.