Rorug06G0004300

Galactose oxidase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
632201 .. 633010
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0004300.1

Sequence Viewer

Length: 369 bp
ATGATTTTGGCTGCAACGAAATCAGCAACGACGACATTCCTGCTGTCCTTATCGTCGTTGGCATCTCTCCTAGTACTATTTTACAGCGAGTACCATATCACAATGTCATGCTTGTTACTCATCGGAGCGTCCCTGGTTTTCGCATTGGTCGTGATCGCGGCCCGTGCCACCATGATCGCCTGGATCACGGTGTTGGTGATGCTCACCTTCGCCGGAAATCGACGTCGGGTTTTGGTTCGACGGGGAAGCCTCATCACCTCCGATGTCGCCGTCCAGTTGTTCAGGGTCGTCATCAAAGAGAGAGGGCTTCTCGCCGTCGCTTGTGCCGCACTTCTCAGTCTCACCGCCATGCTCGGCTTAACGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.09

Weight (kDa)

10.85

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 226
AccII CGCG 1 cut(s) 158
AciI CCGC 3 cut(s) 158, 327, 345
AclWI GGATC 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 223
AfaI GTAC 2 cut(s) 75, 92
AjnI CCWGG 2 cut(s) 132, 179
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 1 cut(s) 191
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 4 cut(s) 196, 208, 247, 334
BceAI ACGGC 2 cut(s) 254, 299
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciT130I CCWGG 2 cut(s) 134, 181
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 1 cut(s) 71
BisI GCNGC 3 cut(s) 12, 159, 327
BlsI GCNGC 3 cut(s) 13, 160, 328
BmcAI AGTACT 1 cut(s) 75
Bme1390I CCNGG 2 cut(s) 134, 181
BmgT120I GGNCC 1 cut(s) 160
BmrFI CCNGG 2 cut(s) 134, 181
BmsI GCATC 2 cut(s) 71, 189
BplI GAGNNNNNCTC 2 cut(s) 294, 326
BsaHI GRCGYC 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 274
BseBI CCWGG 2 cut(s) 134, 181
BseDI CCNNGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 349
BseNI ACTGG 1 cut(s) 274
Bsh1236I CGCG 1 cut(s) 158
BshFI GGCC 1 cut(s) 161
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 1 cut(s) 161
Bsp143I GATC 3 cut(s) 153, 174, 183
BspACI CCGC 3 cut(s) 158, 327, 345
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 348
BspFNI CGCG 1 cut(s) 158
BspPI GGATC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 3 cut(s) 153, 174, 183
BssNI GRCGYC 1 cut(s) 223
Bst2UI CCWGG 2 cut(s) 134, 181
Bst4CI ACNGT 1 cut(s) 190
BstACI GRCGYC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 335
BstFNI CGCG 1 cut(s) 158
BstKTI GATC 3 cut(s) 156, 177, 186
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 3 cut(s) 153, 174, 183
BstMWI GCNNNNNNNGC 2 cut(s) 164, 326
BstNI CCWGG 2 cut(s) 134, 181
BstSCI CCNGG 2 cut(s) 132, 179
BstUI CGCG 1 cut(s) 158
BsuRI GGCC 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 160
CseI GACGC 1 cut(s) 117
Csp6I GTAC 2 cut(s) 74, 91
CviAII CATG 3 cut(s) 108, 172, 349
CviJI RGCY 5 cut(s) 11, 161, 249, 307, 357
CviKI_1 RGCY 5 cut(s) 11, 161, 249, 307, 357
CviQI GTAC 2 cut(s) 74, 91
DdeI CTNAG 1 cut(s) 335
DpnI GATC 3 cut(s) 155, 176, 185
DpnII GATC 3 cut(s) 153, 174, 183
EcoRII CCWGG 2 cut(s) 132, 179
FaeI CATG 3 cut(s) 111, 175, 352
FaiI YATR 4 cut(s) 96, 109, 173, 350
FaqI GGGAC 1 cut(s) 115
FatI CATG 3 cut(s) 107, 171, 348
Fnu4HI GCNGC 3 cut(s) 12, 159, 327
Fsp4HI GCNGC 3 cut(s) 12, 159, 327
FspBI CTAG 1 cut(s) 71
GluI GCNGC 3 cut(s) 12, 159, 327
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 213
HgaI GACGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 223
Hin1II CATG 3 cut(s) 111, 175, 352
HpaII CCGG 1 cut(s) 213
HphI GGTGA 4 cut(s) 196, 208, 247, 334
Hpy188I TCNGA 3 cut(s) 125, 262, 368
Hpy188III TCNNGA 1 cut(s) 151
Hpy99I CGWCG 6 cut(s) 34, 58, 225, 228, 243, 320
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 326
HpyF3I CTNAG 1 cut(s) 335
HpySE526I ACGT 1 cut(s) 223
Hsp92I GRCGYC 1 cut(s) 223
Hsp92II CATG 3 cut(s) 111, 175, 352
Kzo9I GATC 3 cut(s) 153, 174, 183
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 8 cut(s) 53, 119, 146, 166, 193, 226, 268, 287
LweI GCATC 2 cut(s) 71, 189
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 114
MalI GATC 3 cut(s) 155, 176, 185
MboI GATC 3 cut(s) 153, 174, 183
MnlI CCTC 3 cut(s) 260, 268, 296
MseI TTAA 1 cut(s) 359
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 2 cut(s) 134, 181
MvaI CCWGG 2 cut(s) 134, 181
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 164, 326
NdeII GATC 3 cut(s) 153, 174, 183
NlaIII CATG 3 cut(s) 111, 175, 352
NmeAIII GCCGAG 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PkrI GCNGC 3 cut(s) 13, 160, 328
Psp6I CCWGG 2 cut(s) 132, 179
PspGI CCWGG 2 cut(s) 132, 179
PspPI GGNCC 1 cut(s) 160
RsaI GTAC 2 cut(s) 75, 92
RsaNI GTAC 2 cut(s) 74, 91
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 3 cut(s) 12, 159, 327
Sau3AI GATC 3 cut(s) 153, 174, 183
Sau96I GGNCC 1 cut(s) 160
ScaI AGTACT 1 cut(s) 75
ScrFI CCNGG 2 cut(s) 134, 181
SetI ASST 3 cut(s) 209, 226, 260
SfaNI GCATC 2 cut(s) 71, 189
SmiMI CAYNNNNRTG 1 cut(s) 347
SsiI CCGC 3 cut(s) 158, 327, 345
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 132, 179
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 220, 238
TatI WGTACW 1 cut(s) 73
TauI GCSGC 2 cut(s) 161, 329
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TseI GCWGC 1 cut(s) 11
XspI CTAG 1 cut(s) 71
ZraI GACGTC 1 cut(s) 224
ZrmI AGTACT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.