RLG00000014357

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000556
Physical Location & Seq
Reverse (-)
51955781 .. 51956635
855 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014357

Sequence Viewer

Length: 726 bp
ATGTTCGACCGCACCGTCTTCGGAAAATCCAACCTCTCCCTCCCCAACGGCGTCTGCAGCAACAATCCCAACGACACGGTGTTTAAAGTCGACTGCACGGCTCACTCAGCCGAGTACGACGTGGCGTCTAACAATATCCTTCCCCTGTTTGTGTACTCGGGCACGTGGTGCTCCTCAGGATCAGTAAACCCCAACGGAAGTCTGGTCCAGACGGGAGGCTTCAGCGACGGAGATAGAAGGGTTAGGGTTTTTGATCCGTGTCCTACTTGTGACTGGAAAGAGATCGAGTTCGGTTTGCCTTTTCTTGATGAGACAAGTGACGGCAAAGCCATAGAGAACAATCTCTACCCCTTTGTTTTTCTCAACATTGACGACAACCTTTTCATATTCGCCAACAATAGAGCCATATTGTTCGATTATGTTGCCGCTAAAATCGTGAAGACGCACCCAACAATACCCTGTGGAGACCCGAGGTCGTATCCGAGCACTGGTTCAGCGGTGCTGTTACTTCTCAAGAGTTCAAAAGGTCAGGCTGTGGCAGCTAAGGTTTTAGTCTGCGGTGGAGCTCCCAAATGCTCTTATGTTAATTCCCAAAGGGGAACTTCTGTGGAAGCATTGAAGACAAGCGCTCGGATCAAAATAACCGACCCGAACCCACAGTGGCTTGTGGAAGACATGCCTCAAGCTAGAGTCATGGGTGACATGTCAGTTACTTCCCAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

242

Amino Acids

26.19

Weight (kDa)

5.7

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 1 - 97 8.2e-37 Glyoxal oxidase N-terminus
Glyoxal_oxid_N PF07250 97 - 236 3.8e-51 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 90
AciI CCGC 4 cut(s) 10, 426, 497, 558
AclWI GGATC 3 cut(s) 187, 248, 641
AcuI CTGAAG 1 cut(s) 205
AcvI CACGTG 1 cut(s) 165
AcyI GRCGYC 2 cut(s) 51, 125
AdeI CACNNNGTG 1 cut(s) 168
AfaI GTAC 2 cut(s) 116, 155
AfeI AGCGCT 1 cut(s) 628
AfiI CCNNNNNNNGG 1 cut(s) 488
AflIII ACRYGT 1 cut(s) 702
AgsI TTSAA 2 cut(s) 522, 619
AhdI GACNNNNNGTC 2 cut(s) 124, 472
AjiI CACGTC 1 cut(s) 121
AluBI AGCT 3 cut(s) 542, 566, 686
AluI AGCT 3 cut(s) 542, 566, 686
Alw21I GWGCWC 3 cut(s) 173, 488, 568
Alw26I GTCTC 2 cut(s) 305, 459
AlwI GGATC 3 cut(s) 187, 248, 641
Ama87I CYCGRG 2 cut(s) 157, 469
Aor51HI AGCGCT 1 cut(s) 628
ApeKI GCWGC 2 cut(s) 57, 539
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 710
AvaI CYCGRG 2 cut(s) 157, 469
AvaII GGWCC 1 cut(s) 205
AxyI CCTNAGG 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 568
BbrPI CACGTG 1 cut(s) 165
BbsI GAAGAC 4 cut(s) 10, 446, 626, 678
Bbv12I GWGCWC 3 cut(s) 173, 488, 568
BbvI GCAGC 2 cut(s) 69, 551
BceAI ACGGC 3 cut(s) 64, 114, 337
BcgI CGANNNNNNTGC 3 cut(s) 35, 404, 438
BciVI GTATCC 1 cut(s) 489
BcoDI GTCTC 2 cut(s) 305, 459
BfaI CTAG 1 cut(s) 687
BfmI CTRYAG 1 cut(s) 55
BfoI RGCGCY 1 cut(s) 630
BfuI GTATCC 1 cut(s) 489
BisI GCNGC 3 cut(s) 58, 426, 540
BlsI GCNGC 3 cut(s) 59, 427, 541
Bme18I GGWCC 1 cut(s) 205
BmeRI GACNNNNNGTC 2 cut(s) 124, 472
BmeT110I CYCGRG 2 cut(s) 157, 469
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 205
BpiI GAAGAC 4 cut(s) 10, 446, 626, 678
Bpu10I CCTNAGC 1 cut(s) 543
BpuEI CTTGAG 2 cut(s) 497, 666
BsaAI YACGTR 1 cut(s) 165
BsaHI GRCGYC 2 cut(s) 51, 125
BsaI GGTCTC 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 470
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 2 cut(s) 278, 493
Bse21I CCTNAGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 470
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMII CTCAG 2 cut(s) 120, 189
BseNI ACTGG 2 cut(s) 278, 493
BseRI GAGGAG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 2 cut(s) 69, 551
BsgI GTGCAG 1 cut(s) 79
Bsh1285I CGRYCG 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 10
BsiHKAI GWGCWC 3 cut(s) 173, 488, 568
BsiHKCI CYCGRG 2 cut(s) 157, 469
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 2 cut(s) 305, 459
Bso31I GGTCTC 1 cut(s) 459
BsoBI CYCGRG 2 cut(s) 157, 469
Bsp1286I GDGCHC 4 cut(s) 164, 173, 488, 568
Bsp143I GATC 4 cut(s) 179, 253, 282, 633
BspACI CCGC 4 cut(s) 10, 426, 497, 558
BspCNI CTCAG 2 cut(s) 119, 188
BspMAI CTGCAG 1 cut(s) 59
BspPI GGATC 3 cut(s) 187, 248, 641
BspTNI GGTCTC 1 cut(s) 459
BsrI ACTGG 2 cut(s) 278, 493
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 4 cut(s) 179, 253, 282, 633
BssNI GRCGYC 2 cut(s) 51, 125
Bst4CI ACNGT 4 cut(s) 16, 79, 660, 723
BstACI GRCGYC 2 cut(s) 51, 125
BstAPI GCANNNNNTGC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 165
BstDEI CTNAG 3 cut(s) 106, 175, 543
BstH2I RGCGCY 1 cut(s) 630
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 4 cut(s) 182, 256, 285, 636
BstMAI GTCTC 2 cut(s) 305, 459
BstMBI GATC 4 cut(s) 179, 253, 282, 633
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 4 cut(s) 57, 107, 168, 539
BstNSI RCATGY 2 cut(s) 679, 706
BstSFI CTRYAG 1 cut(s) 55
BstSLI GKGCMC 1 cut(s) 164
BstV1I GCAGC 2 cut(s) 69, 551
BstV2I GAAGAC 4 cut(s) 10, 446, 626, 678
Bsu36I CCTNAGG 1 cut(s) 175
BsuI GTATCC 1 cut(s) 489
BtrI CACGTC 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 486, 665
CfoI GCGC 1 cut(s) 629
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 3 cut(s) 40, 114, 451
Csp6I GTAC 2 cut(s) 115, 154
CviAII CATG 3 cut(s) 676, 694, 703
CviQI GTAC 2 cut(s) 115, 154
DdeI CTNAG 3 cut(s) 106, 175, 543
DpnI GATC 4 cut(s) 181, 255, 284, 635
DpnII GATC 4 cut(s) 179, 253, 282, 633
DraI TTTAAA 1 cut(s) 85
DraIII CACNNNGTG 1 cut(s) 168
DrdI GACNNNNNNGTC 1 cut(s) 14
DriI GACNNNNNGTC 2 cut(s) 124, 472
DseDI GACNNNNNNGTC 1 cut(s) 14
Eam1105I GACNNNNNGTC 2 cut(s) 124, 472
Ecl136II GAGCTC 1 cut(s) 566
Eco24I GRGCYC 1 cut(s) 568
Eco31I GGTCTC 1 cut(s) 459
Eco47I GGWCC 1 cut(s) 205
Eco47III AGCGCT 1 cut(s) 628
Eco53kI GAGCTC 1 cut(s) 566
Eco57I CTGAAG 1 cut(s) 205
Eco72I CACGTG 1 cut(s) 165
Eco81I CCTNAGG 1 cut(s) 175
Eco88I CYCGRG 2 cut(s) 157, 469
EcoICRI GAGCTC 1 cut(s) 566
EcoT38I GRGCYC 1 cut(s) 568
FaeI CATG 3 cut(s) 679, 697, 706
FaiI YATR 8 cut(s) 332, 386, 407, 420, 582, 677, 695, 704
FalI AAGNNNNNCTT 2 cut(s) 586, 618
FatI CATG 3 cut(s) 675, 693, 702
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 58, 426, 540
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 3 cut(s) 58, 426, 540
FspBI CTAG 1 cut(s) 687
GlaI GCGC 1 cut(s) 628
GluI GCNGC 3 cut(s) 58, 426, 540
HaeII RGCGCY 1 cut(s) 630
HgaI GACGC 3 cut(s) 40, 114, 451
HhaI GCGC 1 cut(s) 629
Hin1I GRCGYC 2 cut(s) 51, 125
Hin1II CATG 3 cut(s) 679, 697, 706
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 690
HphI GGTGA 1 cut(s) 710
Hpy166II GTNNAC 3 cut(s) 91, 154, 187
Hpy188I TCNGA 3 cut(s) 23, 483, 633
Hpy188III TCNNGA 5 cut(s) 177, 208, 305, 436, 514
Hpy8I GTNNAC 3 cut(s) 91, 154, 187
Hpy99I CGWCG 2 cut(s) 122, 230
HpyAV CCTTC 2 cut(s) 149, 231
HpyCH4III ACNGT 4 cut(s) 16, 79, 660, 723
HpyCH4IV ACGT 2 cut(s) 120, 164
HpyCH4V TGCA 2 cut(s) 57, 96
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 107, 168, 539
HpyF3I CTNAG 3 cut(s) 106, 175, 543
HpySE526I ACGT 2 cut(s) 120, 164
Hsp92I GRCGYC 2 cut(s) 51, 125
Hsp92II CATG 3 cut(s) 679, 697, 706
HspAI GCGC 1 cut(s) 627
Kzo9I GATC 4 cut(s) 179, 253, 282, 633
LmnI GCTCC 3 cut(s) 176, 563, 571
LpnPI CCDG 8 cut(s) 158, 162, 188, 221, 259, 472, 474, 515
Lsp1109I GCAGC 2 cut(s) 69, 551
MaeI CTAG 1 cut(s) 687
MaeII ACGT 2 cut(s) 120, 164
MaeIII GTNAC 5 cut(s) 269, 317, 504, 698, 709
MalI GATC 4 cut(s) 181, 255, 284, 635
MboI GATC 4 cut(s) 179, 253, 282, 633
MboII GAAGA 4 cut(s) 10, 451, 631, 683
MhlI GDGCHC 4 cut(s) 164, 173, 488, 568
MluCI AATT 1 cut(s) 586
MlyI GAGTC 1 cut(s) 699
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 6 cut(s) 44, 50, 184, 209, 465, 690
MseI TTAA 2 cut(s) 84, 585
MspA1I CMGCKG 1 cut(s) 497
MwoI GCNNNNNNNGC 4 cut(s) 57, 107, 168, 539
NdeII GATC 4 cut(s) 179, 253, 282, 633
NlaIII CATG 3 cut(s) 679, 697, 706
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 3 cut(s) 269, 317, 698
NspI RCATGY 2 cut(s) 679, 706
PciI ACATGT 1 cut(s) 702
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PkrI GCNGC 3 cut(s) 59, 427, 541
PleI GAGTC 1 cut(s) 698
PmaCI CACGTG 1 cut(s) 165
PmlI CACGTG 1 cut(s) 165
PpsI GAGTC 1 cut(s) 698
Ppu21I YACGTR 1 cut(s) 165
PscI ACATGT 1 cut(s) 702
Psp124BI GAGCTC 1 cut(s) 568
PspCI CACGTG 1 cut(s) 165
PspPI GGNCC 1 cut(s) 205
PsrI GAACNNNNNNTAC 2 cut(s) 329, 361
PstI CTGCAG 1 cut(s) 59
RsaI GTAC 2 cut(s) 116, 155
RsaNI GTAC 2 cut(s) 115, 154
SacI GAGCTC 1 cut(s) 568
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 2 cut(s) 84, 585
SatI GCNGC 3 cut(s) 58, 426, 540
Sau3AI GATC 4 cut(s) 179, 253, 282, 633
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 699
SduI GDGCHC 4 cut(s) 164, 173, 488, 568
SfcI CTRYAG 1 cut(s) 55
SinI GGWCC 1 cut(s) 205
SmlI CTYRAG 2 cut(s) 512, 681
SmoI CTYRAG 2 cut(s) 512, 681
Sse9I AATT 1 cut(s) 586
SsiI CCGC 4 cut(s) 10, 426, 497, 558
SspMI CTAG 1 cut(s) 687
SstI GAGCTC 1 cut(s) 568
TaaI ACNGT 4 cut(s) 16, 79, 660, 723
TaiI ACGT 2 cut(s) 123, 167
TaqI TCGA 4 cut(s) 6, 90, 285, 414
TasI AATT 1 cut(s) 586
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 428
Tru1I TTAA 2 cut(s) 84, 585
Tru9I TTAA 2 cut(s) 84, 585
TscAI CASTG 2 cut(s) 493, 665
TseFI GTSAC 3 cut(s) 269, 317, 698
TseI GCWGC 2 cut(s) 57, 539
Tsp45I GTSAC 3 cut(s) 269, 317, 698
TspDTI ATGAA 1 cut(s) 373
TspGWI ACGGA 3 cut(s) 210, 243, 246
TspRI CASTG 2 cut(s) 493, 665
VpaK11BI GGWCC 1 cut(s) 205
XceI RCATGY 2 cut(s) 679, 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.