Rorug06G0004200

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000556
Physical Location & Seq
Reverse (-)
622963 .. 623208
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0004200.1

Sequence Viewer

Length: 246 bp
ATGGAGGTTGCTCCCACTGAGGCTGGGATGAAGCCAAAGAATTATTCTATGAACATGTCGAAAGACTTTATTCCTATGTGCGTTTTCTCGGAGGGAAATCAAGGCAAGATTGCTGTGAAAGGAAAAGTAGAGCACAAGTTTGACATGAAGCCCCATGGTACAAACTTTGAAGAGTATGGGAAGATGTGTCGTGAAAGGACAAACAAGTCCATGATCAAGAATAGACAAATACATGCAGGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

81

Amino Acids

9.29

Weight (kDa)

9.36

Isoelectric Point (pI)

16.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 205
Acc36I ACCTGC 1 cut(s) 227
AfaI GTAC 1 cut(s) 160
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 1 cut(s) 170
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
Alw21I GWGCWC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BclI TGATCA 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 9
BseYI CCCAGC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 154
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstNSI RCATGY 2 cut(s) 58, 236
BtgI CCRYGG 1 cut(s) 154
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 15
BveI ACCTGC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 159
CviAII CATG 5 cut(s) 55, 145, 155, 211, 233
CviJI RGCY 3 cut(s) 23, 34, 151
CviKI_1 RGCY 3 cut(s) 23, 34, 151
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 1 cut(s) 18
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
DrdI GACNNNNNNGTC 1 cut(s) 205
DseDI GACNNNNNNGTC 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 5 cut(s) 58, 148, 158, 214, 236
FaiI YATR 8 cut(s) 50, 56, 77, 146, 156, 177, 212, 234
FatI CATG 5 cut(s) 54, 144, 154, 210, 232
FbaI TGATCA 1 cut(s) 213
FokI GGATG 1 cut(s) 40
GsaI CCCAGC 1 cut(s) 27
Hin1II CATG 5 cut(s) 58, 148, 158, 214, 236
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 191, 217
HpyCH4V TGCA 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 5 cut(s) 58, 148, 158, 214, 236
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 2 cut(s) 9, 222
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 2 cut(s) 182, 193
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 1 cut(s) 40
MnlI CCTC 2 cut(s) 13, 85
NcoI CCATGG 1 cut(s) 154
NdeII GATC 1 cut(s) 213
NlaIII CATG 5 cut(s) 58, 148, 158, 214, 236
NspI RCATGY 2 cut(s) 58, 236
PciI ACATGT 1 cut(s) 54
PscI ACATGT 1 cut(s) 54
PspFI CCCAGC 1 cut(s) 23
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 213
SduI GDGCHC 1 cut(s) 135
SetI ASST 2 cut(s) 9, 241
Sse9I AATT 1 cut(s) 40
StyI CCWWGG 1 cut(s) 154
TaqI TCGA 1 cut(s) 59
TasI AATT 1 cut(s) 40
TscAI CASTG 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 44, 65, 161
TspRI CASTG 1 cut(s) 22
XceI RCATGY 2 cut(s) 58, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.