Rmu_co8224130.1_g000001

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8224130.1
OG0000556
Physical Location & Seq
Reverse (-)
2 .. 666
665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8224130.1_g000001.1.cds

Sequence Viewer

Length: 665 bp
atgggcggacggcggcagttcaactacgagttttatcccaaaagtggaggctcaatgaacgcgcacagtctaccttttcttgttgagacaagtgacggcaacgccatagagaacaatctctacccttttgtctttctcaaccttgacggcaatctttttatctttgccaacaatagagctatattgtacgactatgttgctggtaaaatagtgaagacgtaccccacaatacccggtggggacccaaggtcttatccgagcaccggttcagcggtgttgctacctctcaaaacttcaaaaggtcaggcagtggcagctgaggttctggtttgcggtggagctcccaaagggtcttatgttaaggccgaaagtgggacttttgtgccagcattgaagacatgcgctcggatcaagataaccgacccgaacccgcagtgggttgtggaaaacatgcctctagctagagtcatgggtgacatgacgttactagccaacggtgacgttttgattatcaacggtgccggatcaggtaccgcggggtgggagctcgggcggaacccggtactgaacccggttgcttacaagcccgataatgcggtcgggtcacggttcgagcaacaaaacccgagcaccataccacgcatgtaccattccactgcagtact
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

222

Amino Acids

23.82

Weight (kDa)

8.81

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 530
AccB1I GGYRCC 2 cut(s) 518, 530
AccI GTMKAC 1 cut(s) 70
AccII CGCG 2 cut(s) 62, 536
AciI CCGC 9 cut(s) 6, 13, 272, 333, 431, 534, 536, 553, 596
AclWI GGATC 2 cut(s) 416, 532
AfaI GTAC 6 cut(s) 188, 221, 532, 564, 647, 663
AfiI CCNNNNNNNGG 5 cut(s) 44, 263, 372, 436, 540
AgeI ACCGGT 1 cut(s) 263
AgsI TTSAA 3 cut(s) 22, 297, 394
AhdI GACNNNNNGTC 1 cut(s) 247
AluBI AGCT 5 cut(s) 179, 317, 341, 461, 547
AluI AGCT 5 cut(s) 179, 317, 341, 461, 547
Alw21I GWGCWC 4 cut(s) 263, 343, 549, 632
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 2 cut(s) 416, 532
Ama87I CYCGRG 2 cut(s) 548, 625
AoxI GGCC 1 cut(s) 363
ApeKI GCWGC 1 cut(s) 314
AsiGI ACCGGT 1 cut(s) 263
Asp718I GGTACC 1 cut(s) 530
AspLEI GCGC 2 cut(s) 64, 404
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 3 cut(s) 234, 560, 572
AsuHPI GGTGA 2 cut(s) 485, 509
AvaI CYCGRG 2 cut(s) 548, 625
AvaII GGWCC 1 cut(s) 241
BaeI ACNNNNGTAYC 2 cut(s) 629, 662
BanI GGYRCC 2 cut(s) 518, 530
BanII GRGCYC 2 cut(s) 343, 549
BbsI GAAGAC 2 cut(s) 221, 401
Bbv12I GWGCWC 4 cut(s) 263, 343, 549, 632
BbvCI CCTCAGC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 326
BceAI ACGGC 3 cut(s) 26, 112, 163
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BcnI CCSGG 3 cut(s) 234, 560, 572
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 3 cut(s) 458, 462, 488
BfmI CTRYAG 1 cut(s) 657
BisI GCNGC 2 cut(s) 14, 315
BlsI GCNGC 2 cut(s) 15, 316
BmcAI AGTACT 1 cut(s) 663
Bme1390I CCNGG 3 cut(s) 234, 560, 572
Bme18I GGWCC 1 cut(s) 241
BmeRI GACNNNNNGTC 1 cut(s) 247
BmeT110I CYCGRG 2 cut(s) 548, 625
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 5 cut(s) 242, 243, 520, 532, 557
BmrFI CCNGG 3 cut(s) 234, 560, 572
BpiI GAAGAC 2 cut(s) 221, 401
Bpu10I CCTNAGC 1 cut(s) 318
BpuMI CCSGG 3 cut(s) 234, 560, 572
BsaJI CCNNGG 2 cut(s) 245, 534
BsaWI WCCGGW 1 cut(s) 263
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 263, 372, 436, 540
Bse118I RCCGGY 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 245, 534
BseLI CCNNNNNNNGG 5 cut(s) 44, 263, 372, 436, 540
BseMII CTCAG 1 cut(s) 309
BseXI GCAGC 1 cut(s) 326
Bsh1236I CGCG 2 cut(s) 62, 536
Bsh1285I CGRYCG 1 cut(s) 600
BshFI GGCC 1 cut(s) 365
BshNI GGYRCC 2 cut(s) 518, 530
BshTI ACCGGT 1 cut(s) 263
BsiEI CGRYCG 1 cut(s) 600
BsiHKAI GWGCWC 4 cut(s) 263, 343, 549, 632
BsiHKCI CYCGRG 2 cut(s) 548, 625
BsiSI CCGG 5 cut(s) 234, 264, 522, 560, 572
BslFI GGGAC 2 cut(s) 254, 388
BslI CCNNNNNNNGG 5 cut(s) 44, 263, 372, 436, 540
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 2 cut(s) 254, 388
BsnI GGCC 1 cut(s) 365
BsoBI CYCGRG 2 cut(s) 548, 625
Bsp1286I GDGCHC 4 cut(s) 263, 343, 549, 632
Bsp143I GATC 2 cut(s) 408, 524
BspACI CCGC 9 cut(s) 6, 13, 272, 333, 431, 534, 536, 553, 596
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 1 cut(s) 310
BspFNI CGCG 2 cut(s) 62, 536
BspLI GGNNCC 5 cut(s) 242, 243, 520, 532, 557
BspMAI CTGCAG 1 cut(s) 661
BspPI GGATC 2 cut(s) 416, 532
BspT107I GGYRCC 2 cut(s) 518, 530
BsrFI RCCGGY 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 245, 534
BssMI GATC 2 cut(s) 408, 524
BssT1I CCWWGG 1 cut(s) 245
Bst4CI ACNGT 4 cut(s) 68, 497, 518, 609
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 1 cut(s) 318
BstDSI CCRYGG 1 cut(s) 534
BstFNI CGCG 2 cut(s) 62, 536
BstHHI GCGC 2 cut(s) 64, 404
BstKTI GATC 2 cut(s) 411, 527
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 2 cut(s) 408, 524
BstMCI CGRYCG 1 cut(s) 600
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNSI RCATGY 3 cut(s) 402, 454, 646
BstSCI CCNGG 3 cut(s) 232, 558, 570
BstSFI CTRYAG 1 cut(s) 657
BstUI CGCG 2 cut(s) 62, 536
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 2 cut(s) 221, 401
BsuRI GGCC 1 cut(s) 365
BtgI CCRYGG 1 cut(s) 534
BtsI GCAGTG 3 cut(s) 315, 440, 654
BtsIMutI CAGTG 3 cut(s) 315, 440, 654
Cac8I GCNNGC 1 cut(s) 387
CfoI GCGC 2 cut(s) 64, 404
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 241
Cfr42I CCGCGG 1 cut(s) 537
Csp6I GTAC 6 cut(s) 187, 220, 531, 563, 646, 662
CspAI ACCGGT 1 cut(s) 263
CviAII CATG 5 cut(s) 399, 451, 469, 478, 643
CviJI RGCY 9 cut(s) 51, 179, 317, 341, 365, 461, 491, 547, 586
CviKI_1 RGCY 9 cut(s) 51, 179, 317, 341, 365, 461, 491, 547, 586
CviQI GTAC 6 cut(s) 187, 220, 531, 563, 646, 662
DdeI CTNAG 1 cut(s) 318
DpnI GATC 2 cut(s) 410, 526
DpnII GATC 2 cut(s) 408, 524
DriI GACNNNNNGTC 1 cut(s) 247
Eam1105I GACNNNNNGTC 1 cut(s) 247
EciI GGCGGA 2 cut(s) 21, 568
Ecl136II GAGCTC 2 cut(s) 341, 547
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 2 cut(s) 343, 549
Eco47I GGWCC 1 cut(s) 241
Eco53kI GAGCTC 2 cut(s) 341, 547
Eco88I CYCGRG 2 cut(s) 548, 625
EcoICRI GAGCTC 2 cut(s) 341, 547
EcoO109I RGGNCCY 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 245
EcoT38I GRGCYC 2 cut(s) 343, 549
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 5 cut(s) 402, 454, 472, 481, 646
FalI AAGNNNNNCTT 2 cut(s) 361, 393
FaqI GGGAC 2 cut(s) 254, 388
FatI CATG 5 cut(s) 398, 450, 468, 477, 642
FauI CCCGC 2 cut(s) 438, 529
FblI GTMKAC 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 14, 315
FriOI GRGCYC 2 cut(s) 343, 549
Fsp4HI GCNGC 2 cut(s) 14, 315
FspBI CTAG 3 cut(s) 458, 462, 488
GlaI GCGC 2 cut(s) 63, 403
GluI GCNGC 2 cut(s) 14, 315
HaeIII GGCC 1 cut(s) 365
HapII CCGG 5 cut(s) 234, 264, 522, 560, 572
HhaI GCGC 2 cut(s) 64, 404
Hin1II CATG 5 cut(s) 402, 454, 472, 481, 646
Hin6I GCGC 2 cut(s) 62, 402
HinP1I GCGC 2 cut(s) 62, 402
HinfI GANTC 1 cut(s) 465
HpaII CCGG 5 cut(s) 234, 264, 522, 560, 572
HphI GGTGA 2 cut(s) 485, 509
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 2 cut(s) 258, 408
Hpy188III TCNNGA 1 cut(s) 412
Hpy8I GTNNAC 1 cut(s) 71
HpyCH4III ACNGT 4 cut(s) 68, 497, 518, 609
HpyCH4IV ACGT 3 cut(s) 218, 482, 501
HpyCH4V TGCA 1 cut(s) 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 1 cut(s) 318
HpySE526I ACGT 3 cut(s) 218, 482, 501
Hsp92II CATG 5 cut(s) 402, 454, 472, 481, 646
HspAI GCGC 2 cut(s) 62, 402
KflI GGGWCCC 1 cut(s) 241
KpnI GGTACC 1 cut(s) 534
KspI CCGCGG 1 cut(s) 537
Kzo9I GATC 2 cut(s) 408, 524
LmnI GCTCC 3 cut(s) 338, 346, 544
Lsp1109I GCAGC 1 cut(s) 326
MaeI CTAG 3 cut(s) 458, 462, 488
MaeII ACGT 3 cut(s) 218, 482, 501
MaeIII GTNAC 5 cut(s) 92, 473, 483, 497, 603
MalI GATC 2 cut(s) 410, 526
MboI GATC 2 cut(s) 408, 524
MboII GAAGA 2 cut(s) 226, 406
MhlI GDGCHC 4 cut(s) 263, 343, 549, 632
MlyI GAGTC 1 cut(s) 474
MnlI CCTC 4 cut(s) 41, 294, 313, 465
MseI TTAA 1 cut(s) 360
MspA1I CMGCKG 3 cut(s) 272, 317, 536
MspI CCGG 5 cut(s) 234, 264, 522, 560, 572
MspR9I CCNGG 3 cut(s) 234, 560, 572
MvnI CGCG 2 cut(s) 62, 536
MwoI GCNNNNNNNGC 1 cut(s) 314
NciI CCSGG 3 cut(s) 234, 560, 572
NdeII GATC 2 cut(s) 408, 524
NlaIII CATG 5 cut(s) 402, 454, 472, 481, 646
NlaIV GGNNCC 5 cut(s) 242, 243, 520, 532, 557
NmuCI GTSAC 4 cut(s) 92, 473, 497, 603
NspI RCATGY 3 cut(s) 402, 454, 646
PinAI ACCGGT 1 cut(s) 263
PkrI GCNGC 2 cut(s) 15, 316
PleI GAGTC 1 cut(s) 473
PpsI GAGTC 1 cut(s) 473
PpuMI RGGWCCY 1 cut(s) 241
Psp124BI GAGCTC 2 cut(s) 343, 549
Psp5II RGGWCCY 1 cut(s) 241
PspN4I GGNNCC 5 cut(s) 242, 243, 520, 532, 557
PspPI GGNCC 1 cut(s) 241
PspPPI RGGWCCY 1 cut(s) 241
PsrI GAACNNNNNNTAC 2 cut(s) 104, 136
PstI CTGCAG 1 cut(s) 661
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 6 cut(s) 188, 221, 532, 564, 647, 663
RsaNI GTAC 6 cut(s) 187, 220, 531, 563, 646, 662
SacI GAGCTC 2 cut(s) 343, 549
SacII CCGCGG 1 cut(s) 537
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 2 cut(s) 14, 315
Sau3AI GATC 2 cut(s) 408, 524
Sau96I GGNCC 1 cut(s) 241
ScaI AGTACT 1 cut(s) 663
SchI GAGTC 1 cut(s) 474
ScrFI CCNGG 3 cut(s) 234, 560, 572
SduI GDGCHC 4 cut(s) 263, 343, 549, 632
SfcI CTRYAG 1 cut(s) 657
Sfr303I CCGCGG 1 cut(s) 537
SgrBI CCGCGG 1 cut(s) 537
SinI GGWCC 1 cut(s) 241
SsiI CCGC 9 cut(s) 6, 13, 272, 333, 431, 534, 536, 553, 596
SspMI CTAG 3 cut(s) 458, 462, 488
SstI GAGCTC 2 cut(s) 343, 549
StyD4I CCNGG 3 cut(s) 232, 558, 570
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 4 cut(s) 68, 497, 518, 609
TaiI ACGT 3 cut(s) 221, 485, 504
TaqI TCGA 1 cut(s) 612
TatI WGTACW 1 cut(s) 661
TauI GCSGC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 3 cut(s) 315, 440, 661
TseFI GTSAC 4 cut(s) 92, 473, 497, 603
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 4 cut(s) 92, 473, 497, 603
TspDTI ATGAA 1 cut(s) 71
TspRI CASTG 3 cut(s) 315, 440, 661
VpaK11BI GGWCC 1 cut(s) 241
XceI RCATGY 3 cut(s) 402, 454, 646
XmiI GTMKAC 1 cut(s) 70
XspI CTAG 3 cut(s) 458, 462, 488
ZrmI AGTACT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.