Rh7CG259000

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000556
Physical Location & Seq
Reverse (-)
25247813 .. 25249274
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG259000.1

Sequence Viewer

Length: 1005 bp
ATGACAACTAAATACTTTCTGCTGTCGTTCTCCCTCTTGATCACCGCAGCTGCTGCTGCTTCCGGCGGCGGCGGCGGCGGCCGGTGGCAGGTCTTGCAGAAAAGTATTGGGATTTCAGCCATGCACATGCAGCTGCTGCGGAACGACCGAGTCATCATGTTCGACCGAACGGATTTCGGAAAATCAAATTTGTCGCTGCCGAGGGGAATCTGCCGGAGGAACCCAAACGACACCGCGTTGAAGGTCGACTGTACCGCACATTCGGTCGAGTACGACGTGGCGAGTAACTCTTTCCGACCGCTCATGCTGTTTTCCGACACTTGGTGCTCCTCCGGGTCAGTCAGCCCCAACGGCAGTCTCGTTCAGACTGGGGGGTGGAACGACGGTGAGCTAAGGGTGAGACTGTTTGAGCCATGCAGCAGTTGTGATTGGGTGGAGATTGCGCATGCGCTGGCCCACCCAAGGTGGTATGCCACAAATCACCTGCTGCCAGATGGCAGGCTTATAATCGTTGGCGGACGCTCGCAGCCAAACTATGAATTTTTTCCCAAGACCAAGGACGGGGAGGGGTCCATCACTGTGCCTTTCCTTGACGAAACAAAGGACTCCGTTGAAGACAATCTGTACCCTTTTGTTTTCCTCAACGTTGATGGCAATTTATTCATATATGCCAACAATCGAGCAATTCTTCTGAACTACGTTACCGGAGAAACTGTGAAGACTTATCCCACAATATCGGGCGGCGATCCGAGATCGTACCCCAGCACCGGTTCCGCCGTCCTGCTCCCTTTGAAGGTTCAAAACGGTACTGTGGCGGAGGCGCAAGTCCTCGTCTGCGGCGGAGCTCCGCTAGGCTCCTACGACAAGGCTCTCAACAAGGGGATTTTCTTGGACGCTTTGAACACCTGCGCCCGCATGCATGACCATAACCGATCCAAATCCTCAATGGAATTTGGACACCATGCCCAGCCCAAGAGTCATGCCCGACATGACTTTGCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

334

Amino Acids

36.51

Weight (kDa)

7.16

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 41 - 311 3.4e-117 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 506
AarI CACCTGC 2 cut(s) 492, 914
Acc16I TGCGCA 1 cut(s) 444
Acc36I ACCTGC 3 cut(s) 79, 492, 914
AccBSI CCGCTC 1 cut(s) 301
AccI GTMKAC 1 cut(s) 246
AccII CGCG 1 cut(s) 236
AclI AACGTT 1 cut(s) 645
AclWI GGATC 2 cut(s) 740, 927
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 3 cut(s) 187, 539, 950
AdeI CACNNNGTG 1 cut(s) 324
AfaI GTAC 5 cut(s) 253, 272, 626, 758, 808
AfiI CCNNNNNNNGG 6 cut(s) 88, 321, 462, 561, 767, 793
AgeI ACCGGT 1 cut(s) 767
AgsI TTSAA 5 cut(s) 241, 614, 793, 800, 901
AjiI CACGTC 1 cut(s) 277
AluBI AGCT 4 cut(s) 50, 133, 391, 845
AluI AGCT 4 cut(s) 50, 133, 391, 845
Alw21I GWGCWC 2 cut(s) 329, 847
Alw26I GTCTC 2 cut(s) 362, 394
AlwI GGATC 2 cut(s) 740, 927
AlwNI CAGNNNCTG 2 cut(s) 53, 136
AoxI GGCC 2 cut(s) 79, 453
ApoI RAATTY 3 cut(s) 187, 539, 950
AsiGI ACCGGT 1 cut(s) 767
Asp700I GAANNNNTTC 1 cut(s) 543
AspLEI GCGC 4 cut(s) 445, 451, 823, 911
AspS9I GGNCC 2 cut(s) 454, 570
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 4 cut(s) 34, 398, 409, 473
AvaII GGWCC 1 cut(s) 570
BanII GRGCYC 1 cut(s) 847
BbsI GAAGAC 2 cut(s) 621, 725
Bbv12I GWGCWC 2 cut(s) 329, 847
BccI CCATC 3 cut(s) 488, 581, 644
BceAI ACGGC 2 cut(s) 367, 761
BclI TGATCA 1 cut(s) 39
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 362, 394
BfaI CTAG 1 cut(s) 851
BfuAI ACCTGC 3 cut(s) 79, 492, 914
BglI GCCNNNNNGGC 1 cut(s) 351
Bme1390I CCNGG 1 cut(s) 334
Bme18I GGWCC 1 cut(s) 570
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 2 cut(s) 454, 570
BmiI GGNNCC 4 cut(s) 221, 571, 772, 856
BmrFI CCNGG 1 cut(s) 334
BmrI ACTGGG 1 cut(s) 378
BmuI ACTGGG 1 cut(s) 378
BpiI GAAGAC 2 cut(s) 621, 725
Bpu10I CCTNAGC 1 cut(s) 392
BpuMI CCSGG 1 cut(s) 334
BsaBI GATNNNNATC 1 cut(s) 937
BsaJI CCNNGG 3 cut(s) 200, 461, 555
BsaWI WCCGGW 2 cut(s) 704, 767
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bsc4I CCNNNNNNNGG 6 cut(s) 88, 321, 462, 561, 767, 793
Bse118I RCCGGY 2 cut(s) 81, 767
Bse1I ACTGG 1 cut(s) 373
Bse8I GATNNNNATC 1 cut(s) 937
BseDI CCNNGG 3 cut(s) 200, 461, 555
BseJI GATNNNNATC 1 cut(s) 937
BseLI CCNNNNNNNGG 6 cut(s) 88, 321, 462, 561, 767, 793
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 319
BseX3I CGGCCG 1 cut(s) 79
BseYI CCCAGC 2 cut(s) 761, 966
Bsh1236I CGCG 1 cut(s) 236
Bsh1285I CGRYCG 5 cut(s) 82, 148, 166, 267, 299
BshFI GGCC 2 cut(s) 81, 455
BshTI ACCGGT 1 cut(s) 767
BsiEI CGRYCG 5 cut(s) 82, 148, 166, 267, 299
BsiHKAI GWGCWC 2 cut(s) 329, 847
BsiSI CCGG 6 cut(s) 63, 82, 214, 333, 705, 768
BslI CCNNNNNNNGG 6 cut(s) 88, 321, 462, 561, 767, 793
BsmAI GTCTC 2 cut(s) 362, 394
BsnI GGCC 2 cut(s) 81, 455
Bsp1286I GDGCHC 2 cut(s) 329, 847
Bsp143I GATC 4 cut(s) 39, 745, 752, 932
BspANI GGCC 2 cut(s) 81, 455
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 4 cut(s) 221, 571, 772, 856
BspMI ACCTGC 3 cut(s) 79, 492, 914
BspPI GGATC 2 cut(s) 740, 927
BsrBI CCGCTC 1 cut(s) 301
BsrFI RCCGGY 2 cut(s) 81, 767
BsrI ACTGG 1 cut(s) 373
BssAI RCCGGY 2 cut(s) 81, 767
BssECI CCNNGG 3 cut(s) 200, 461, 555
BssMI GATC 4 cut(s) 39, 745, 752, 932
BssT1I CCWWGG 2 cut(s) 461, 555
Bst4CI ACNGT 7 cut(s) 251, 386, 405, 580, 715, 806, 811
BstAPI GCANNNNNTGC 3 cut(s) 53, 94, 136
BstC8I GCNNGC 6 cut(s) 447, 453, 500, 524, 913, 917
BstDEI CTNAG 1 cut(s) 392
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 4 cut(s) 445, 451, 823, 911
BstKTI GATC 4 cut(s) 42, 748, 755, 935
BstMAI GTCTC 2 cut(s) 362, 394
BstMBI GATC 4 cut(s) 39, 745, 752, 932
BstMCI CGRYCG 5 cut(s) 82, 148, 166, 267, 299
BstMWI GCNNNNNNNGC 9 cut(s) 53, 56, 72, 75, 78, 94, 130, 136, 351
BstNSI RCATGY 3 cut(s) 130, 449, 919
BstSCI CCNGG 1 cut(s) 332
BstUI CGCG 1 cut(s) 236
BstV2I GAAGAC 2 cut(s) 621, 725
BstZI CGGCCG 1 cut(s) 79
BsuRI GGCC 2 cut(s) 81, 455
BtrI CACGTC 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 576
BveI ACCTGC 3 cut(s) 79, 492, 914
Cac8I GCNNGC 6 cut(s) 447, 453, 500, 524, 913, 917
CaiI CAGNNNCTG 2 cut(s) 53, 136
CfoI GCGC 4 cut(s) 445, 451, 823, 911
Cfr10I RCCGGY 2 cut(s) 81, 767
Cfr13I GGNCC 2 cut(s) 454, 570
CseI GACGC 2 cut(s) 528, 902
Csp6I GTAC 5 cut(s) 252, 271, 625, 757, 807
CspAI ACCGGT 1 cut(s) 767
CviQI GTAC 5 cut(s) 252, 271, 625, 757, 807
DdeI CTNAG 1 cut(s) 392
DpnI GATC 4 cut(s) 41, 747, 754, 934
DpnII GATC 4 cut(s) 39, 745, 752, 932
DraIII CACNNNGTG 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 79
EagI CGGCCG 1 cut(s) 79
EciI GGCGGA 4 cut(s) 531, 763, 830, 855
Ecl136II GAGCTC 1 cut(s) 845
EclXI CGGCCG 1 cut(s) 79
Eco130I CCWWGG 2 cut(s) 461, 555
Eco24I GRGCYC 1 cut(s) 847
Eco47I GGWCC 1 cut(s) 570
Eco52I CGGCCG 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 845
EcoICRI GAGCTC 1 cut(s) 845
EcoT14I CCWWGG 2 cut(s) 461, 555
EcoT22I ATGCAT 1 cut(s) 921
EcoT38I GRGCYC 1 cut(s) 847
ErhI CCWWGG 2 cut(s) 461, 555
FauI CCCGC 1 cut(s) 920
FbaI TGATCA 1 cut(s) 39
FblI GTMKAC 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 847
FspBI CTAG 1 cut(s) 851
FspI TGCGCA 1 cut(s) 444
GlaI GCGC 4 cut(s) 444, 450, 822, 910
GsaI CCCAGC 2 cut(s) 765, 970
HaeIII GGCC 2 cut(s) 81, 455
HapII CCGG 6 cut(s) 63, 82, 214, 333, 705, 768
HgaI GACGC 2 cut(s) 528, 902
HhaI GCGC 4 cut(s) 445, 451, 823, 911
Hin6I GCGC 4 cut(s) 443, 449, 821, 909
HinP1I GCGC 4 cut(s) 443, 449, 821, 909
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 4 cut(s) 150, 207, 605, 976
HpaII CCGG 6 cut(s) 63, 82, 214, 333, 705, 768
HphI GGTGA 4 cut(s) 34, 398, 409, 473
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 6 cut(s) 179, 296, 316, 366, 693, 750
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 2 cut(s) 278, 386
HpyAV CCTTC 2 cut(s) 235, 787
HpyCH4III ACNGT 7 cut(s) 251, 386, 405, 580, 715, 806, 811
HpyCH4IV ACGT 3 cut(s) 276, 645, 699
HpyCH4V TGCA 5 cut(s) 97, 124, 130, 417, 919
HpyF10VI GCNNNNNNNGC 9 cut(s) 53, 56, 72, 75, 78, 94, 130, 136, 351
HpyF3I CTNAG 1 cut(s) 392
HpySE526I ACGT 3 cut(s) 276, 645, 699
HspAI GCGC 4 cut(s) 443, 449, 821, 909
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 4 cut(s) 39, 745, 752, 932
LmnI GCTCC 5 cut(s) 332, 789, 842, 850, 860
MaeI CTAG 1 cut(s) 851
MaeII ACGT 3 cut(s) 276, 645, 699
MaeIII GTNAC 2 cut(s) 284, 700
MalI GATC 4 cut(s) 41, 747, 754, 934
MbiI CCGCTC 1 cut(s) 301
MboI GATC 4 cut(s) 39, 745, 752, 932
MboII GAAGA 3 cut(s) 626, 680, 730
MhlI GDGCHC 2 cut(s) 329, 847
MluCI AATT 5 cut(s) 187, 539, 655, 684, 950
MlyI GAGTC 3 cut(s) 159, 599, 985
MmeI TCCRAC 2 cut(s) 319, 339
MnlI CCTC 9 cut(s) 44, 195, 210, 340, 559, 650, 811, 839, 952
Mph1103I ATGCAT 1 cut(s) 921
MroXI GAANNNNTTC 1 cut(s) 543
MslI CAYNNNNRTG 2 cut(s) 125, 578
MspA1I CMGCKG 2 cut(s) 50, 133
MspI CCGG 6 cut(s) 63, 82, 214, 333, 705, 768
MspR9I CCNGG 1 cut(s) 334
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 9 cut(s) 53, 56, 72, 75, 78, 94, 130, 136, 351
NciI CCSGG 1 cut(s) 334
NdeII GATC 4 cut(s) 39, 745, 752, 932
NlaIV GGNNCC 4 cut(s) 221, 571, 772, 856
NmeAIII GCCGAG 1 cut(s) 225
NsbI TGCGCA 1 cut(s) 444
NsiI ATGCAT 1 cut(s) 921
NspI RCATGY 3 cut(s) 130, 449, 919
PaeI GCATGC 2 cut(s) 449, 919
PaqCI CACCTGC 2 cut(s) 492, 914
PcsI WCGNNNNNNNCGW 2 cut(s) 273, 357
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 1 cut(s) 207
PflFI GACNNNGTC 1 cut(s) 149
PinAI ACCGGT 1 cut(s) 767
PleI GAGTC 3 cut(s) 158, 599, 984
PpsI GAGTC 3 cut(s) 158, 599, 984
PsiI TTATAA 1 cut(s) 506
Psp124BI GAGCTC 1 cut(s) 847
Psp1406I AACGTT 1 cut(s) 645
PspFI CCCAGC 2 cut(s) 761, 966
PspN4I GGNNCC 4 cut(s) 221, 571, 772, 856
PspPI GGNCC 2 cut(s) 454, 570
PstNI CAGNNNCTG 2 cut(s) 53, 136
PsyI GACNNNGTC 1 cut(s) 149
PvuII CAGCTG 2 cut(s) 50, 133
RsaI GTAC 5 cut(s) 253, 272, 626, 758, 808
RsaNI GTAC 5 cut(s) 252, 271, 625, 757, 807
RseI CAYNNNNRTG 2 cut(s) 125, 578
SacI GAGCTC 1 cut(s) 847
SalI GTCGAC 1 cut(s) 245
Sau3AI GATC 4 cut(s) 39, 745, 752, 932
Sau96I GGNCC 2 cut(s) 454, 570
SchI GAGTC 3 cut(s) 159, 599, 985
ScrFI CCNGG 1 cut(s) 334
SduI GDGCHC 2 cut(s) 329, 847
SinI GGWCC 1 cut(s) 570
SmiMI CAYNNNNRTG 2 cut(s) 125, 578
SphI GCATGC 2 cut(s) 449, 919
Sse9I AATT 5 cut(s) 187, 539, 655, 684, 950
SspMI CTAG 1 cut(s) 851
SstI GAGCTC 1 cut(s) 847
StyD4I CCNGG 1 cut(s) 332
StyI CCWWGG 2 cut(s) 461, 555
TaaI ACNGT 7 cut(s) 251, 386, 405, 580, 715, 806, 811
TaiI ACGT 3 cut(s) 279, 648, 702
TaqI TCGA 4 cut(s) 162, 246, 267, 679
TaqII GACCGA 3 cut(s) 162, 180, 253
TasI AATT 5 cut(s) 187, 539, 655, 684, 950
TauI GCSGC 7 cut(s) 69, 72, 75, 78, 81, 744, 840
TfiI GAWTC 1 cut(s) 207
TscAI CASTG 1 cut(s) 583
TspDTI ATGAA 2 cut(s) 552, 652
TspGWI ACGGA 2 cut(s) 185, 598
TspRI CASTG 1 cut(s) 583
Tth111I GACNNNGTC 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 570
XapI RAATTY 3 cut(s) 187, 539, 950
XceI RCATGY 3 cut(s) 130, 449, 919
XcmI CCANNNNNNNNNTGG 1 cut(s) 943
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 1 cut(s) 851
Zsp2I ATGCAT 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.