MD15G1068600.v1.1

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000556
Physical Location & Seq
Forward (+)
4751613 .. 4751879
267 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1068600.v1.1.491

Sequence Viewer

Length: 267 bp
ATGCACATGCAACTCCTCCGCAACGACCGCGTCATCATGTTCGACCGCACCGACTTCGGCAAATCCAACTTGTCCCTAGCGAACGGTTCATGTGACCGAAACGACTGCACAGCCCACTCTGCAGAGTACGACTTCCAAACCAACACCCTCCGCCCCCTCACGGTTCAATCCGATGTTTGTTGTTCCTCCGGCTCGGTAGCTCCCAACGGCAACTTGATCCAAACCGGGGGCTTCAACGACGGAGAGCATCGCGTTAGCGTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

89

Amino Acids

9.69

Weight (kDa)

5.36

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 1 - 88 1.5e-32 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 30, 252
AciI CCGC 4 cut(s) 19, 28, 46, 151
AclWI GGATC 1 cut(s) 211
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 2 cut(s) 160, 226
AgsI TTSAA 2 cut(s) 167, 235
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
AlwI GGATC 1 cut(s) 211
AsuC2I CCSGG 1 cut(s) 226
BceAI ACGGC 1 cut(s) 223
BcgI CGANNNNNNTGC 4 cut(s) 37, 71, 87, 121
BcnI CCSGG 1 cut(s) 226
BfaI CTAG 2 cut(s) 77, 265
BfmI CTRYAG 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 256
BpuMI CCSGG 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 226
BseDI CCNNGG 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 160, 226
BseRI GAGGAG 1 cut(s) 5
BsgI GTGCAG 1 cut(s) 91
Bsh1236I CGCG 2 cut(s) 30, 252
Bsh1285I CGRYCG 2 cut(s) 28, 46
BsiEI CGRYCG 2 cut(s) 28, 46
BsiSI CCGG 2 cut(s) 189, 225
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 2 cut(s) 160, 226
BsmFI GGGAC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 4 cut(s) 19, 28, 46, 151
BspFNI CGCG 2 cut(s) 30, 252
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 86, 163
BstFNI CGCG 2 cut(s) 30, 252
BstKTI GATC 1 cut(s) 219
BstMBI GATC 1 cut(s) 216
BstMCI CGRYCG 2 cut(s) 28, 46
BstMWI GCNNNNNNNGC 2 cut(s) 27, 119
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 120
BstUI CGCG 2 cut(s) 30, 252
BtgZI GCGATG 1 cut(s) 233
CseI GACGC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 127
CviAII CATG 3 cut(s) 7, 37, 90
CviJI RGCY 4 cut(s) 113, 192, 200, 231
CviKI_1 RGCY 4 cut(s) 113, 192, 200, 231
CviQI GTAC 1 cut(s) 127
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
EciI GGCGGA 1 cut(s) 140
FaeI CATG 3 cut(s) 10, 40, 93
FaiI YATR 3 cut(s) 8, 38, 91
FaqI GGGAC 1 cut(s) 58
FatI CATG 3 cut(s) 6, 36, 89
FspBI CTAG 2 cut(s) 77, 265
HapII CCGG 2 cut(s) 189, 225
HgaI GACGC 1 cut(s) 19
Hin1II CATG 3 cut(s) 10, 40, 93
HpaII CCGG 2 cut(s) 189, 225
Hpy188I TCNGA 1 cut(s) 172
Hpy99I CGWCG 1 cut(s) 242
HpyCH4III ACNGT 2 cut(s) 86, 163
HpyCH4V TGCA 4 cut(s) 4, 10, 108, 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 119
Hsp92II CATG 3 cut(s) 10, 40, 93
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 2 cut(s) 202, 238
LweI GCATC 1 cut(s) 256
MaeI CTAG 2 cut(s) 77, 265
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 4 cut(s) 26, 158, 167, 196
MspI CCGG 2 cut(s) 189, 225
MspR9I CCNGG 1 cut(s) 226
MvnI CGCG 2 cut(s) 30, 252
MwoI GCNNNNNNNGC 2 cut(s) 27, 119
NciI CCSGG 1 cut(s) 226
NdeII GATC 1 cut(s) 216
NlaIII CATG 3 cut(s) 10, 40, 93
NmuCI GTSAC 1 cut(s) 92
NspI RCATGY 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PflFI GACNNNGTC 1 cut(s) 29
PstI CTGCAG 1 cut(s) 124
PsyI GACNNNGTC 1 cut(s) 29
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
Sau3AI GATC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 226
SetI ASST 1 cut(s) 202
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 120
SsiI CCGC 4 cut(s) 19, 28, 46, 151
SspMI CTAG 2 cut(s) 77, 265
StyD4I CCNGG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 86, 163
TaqI TCGA 1 cut(s) 42
TaqII GACCGA 1 cut(s) 111
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 78
TspGWI ACGGA 1 cut(s) 255
Tth111I GACNNNGTC 1 cut(s) 29
XceI RCATGY 1 cut(s) 10
XspI CTAG 2 cut(s) 77, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.