Rorug06G0313700

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000556
Physical Location & Seq
Reverse (-)
46493735 .. 46503499
9765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0313700.1

Sequence Viewer

Length: 1311 bp
ATGGAAAGAGTGAAGAGGACAATGACAATGGATTTGGTGCTCAAGCTTTCATGTATCGGTTGCGGTTCATCCTCCGACTTGTATGGAAGCGGCTGCAAGCACTTGACTCTCTGCTTGTCATGTGGCAGATCAATGACTCAGCAGAAAGCCAAGTGCTCTCATTGTGGTGCTGTTCTCACCTGCTTGATTCGAGAGTATGACGTTGTGCGTGCAAACAATGATGACAAGAACTACTTCATCAGTAGATTCTCGACAGGACTGCCCAACTTCTCTAAGAACAAGATAAGCCGTGGGTCTTGGAGGATGAGACTGGACGGTCCGAGTACCAGGGCCATCTTCAAGAATTGTTTTCAACTTAATTACTACCTACTAATGCAAGAAGGAGAGGAGATTTCTGTTGTTCCCGCTGGTTCCTGGTTCAACTTTGACAAAGTTGCACAGTATAATAAGCAACTTACTTTGGAGGAAGCAGAAGTAAAGATGATCAATAAGAAAAAGATGCAAGATTTATATCAAAGAAGGCTTATGAAAGCTGCAACTAATGGAGCTGTTGCATTTGGAAAAAGAAGAGGTGGTGATGATGAAGGAAACATCTCAGATAATAGTGATGAGGAAGAAGATGTAGCAAGGAAAAACAAACTTGAACTCGAGAGAACAGGTGGCGATGATGAAGGTACAAGTGGAGATGATGACTTTGATAATGATGATAGTGAGAAGGATGATGACTGGAAGCTTGAGAAGATTTTCAGCGATGATGATGAAAATAATACCAAGGAAATAGAAGACTTTGCAACCGAGGATGATGAGGAAGATGATAATAATGAAGAGGAGGGTGGACTCAGTGAATCCGGAAAAGAGTTGAAGAGGCTACTTGGGCACCTCACTGAGTCAGATACACAGGATGACAACGAAACTGAGGATACTAATATTATAGAGAACAGTCATTCTAGATCGGCTCAGACTACCCCATCTCCCTCCAAGCCATCCAAAGGGATGAGAAAACAATATGATGATGATGATGTCGAGGCATTTAGCTGTGCACCTCCCCAGAAGTTGAAGACTGAAAATGATCAAAAACCTTCCATAAAAGAAGAGCCTGCATCTGCTAGTCCTATGAGTGAGGAAGAAATCAGGGCCGTTCTTGAGAAAGAACTAGCAATTTCCTTACAAGACCTTGTTGACCACTATCCAGGAAGAGTCGAATCGAATGAGGAGAAGAAGACTTTAATAGCAAGGTTGAGGAGTATGTCTTACAAAATACTATATATAAGAGACCCAAAGATGATGAAACCGGTTGCAATTTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

436

Amino Acids

49.37

Weight (kDa)

4.77

Isoelectric Point (pI)

56.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIF_alpha PF05793 100 - 189 4.4e-16 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 188
AasI GACNNNNNNGTC 1 cut(s) 315
Acc36I ACCTGC 1 cut(s) 188
AccB1I GGYRCC 1 cut(s) 876
AccIII TCCGGA 1 cut(s) 848
AciI CCGC 3 cut(s) 63, 90, 405
AfaI GTAC 2 cut(s) 325, 676
AfiI CCNNNNNNNGG 1 cut(s) 989
AgeI ACCGGT 1 cut(s) 1291
AgsI TTSAA 6 cut(s) 340, 353, 421, 644, 862, 1057
AjnI CCWGG 3 cut(s) 326, 413, 1189
AluBI AGCT 5 cut(s) 46, 533, 548, 733, 1035
AluI AGCT 5 cut(s) 46, 533, 548, 733, 1035
Alw21I GWGCWC 3 cut(s) 42, 158, 1042
Alw26I GTCTC 2 cut(s) 301, 1266
Alw44I GTGCAC 1 cut(s) 1038
Ama87I CYCGRG 1 cut(s) 647
Aor13HI TCCGGA 1 cut(s) 848
AoxI GGCC 2 cut(s) 330, 1134
ApaLI GTGCAC 1 cut(s) 1038
ApeKI GCWGC 2 cut(s) 93, 533
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
AsiGI ACCGGT 1 cut(s) 1291
Asp700I GAANNNNTTC 2 cut(s) 233, 743
AspS9I GGNCC 3 cut(s) 317, 330, 1134
AsuHPI GGTGA 2 cut(s) 169, 587
AvaI CYCGRG 1 cut(s) 647
AvaII GGWCC 1 cut(s) 317
BaeGI GKGCMC 2 cut(s) 879, 1042
BanI GGYRCC 1 cut(s) 876
BbsI GAAGAC 3 cut(s) 789, 1064, 1226
Bbv12I GWGCWC 3 cut(s) 42, 158, 1042
BbvI GCAGC 2 cut(s) 80, 520
BccI CCATC 3 cut(s) 341, 976, 991
BceAI ACGGC 2 cut(s) 273, 1121
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BciT130I CCWGG 3 cut(s) 328, 415, 1191
BciVI GTATCC 1 cut(s) 913
BclI TGATCA 2 cut(s) 483, 1069
BcoDI GTCTC 2 cut(s) 301, 1266
BfaI CTAG 3 cut(s) 948, 1107, 1154
BfuAI ACCTGC 1 cut(s) 188
BfuI GTATCC 1 cut(s) 913
BisI GCNGC 3 cut(s) 91, 94, 534
BlsI GCNGC 3 cut(s) 92, 95, 535
Bme1390I CCNGG 3 cut(s) 328, 415, 1191
Bme18I GGWCC 1 cut(s) 317
BmeT110I CYCGRG 1 cut(s) 647
BmgT120I GGNCC 3 cut(s) 317, 330, 1134
BmiI GGNNCC 2 cut(s) 412, 878
BmrFI CCNGG 3 cut(s) 328, 415, 1191
BmsI GCATC 2 cut(s) 489, 1109
BpiI GAAGAC 3 cut(s) 789, 1064, 1226
BpuEI CTTGAG 3 cut(s) 26, 755, 1163
BsaBI GATNNNNATC 1 cut(s) 510
BsaI GGTCTC 1 cut(s) 1266
BsaJI CCNNGG 4 cut(s) 289, 327, 771, 795
BsaWI WCCGGW 2 cut(s) 848, 1291
BsaXI ACNNNNNCTCC 2 cut(s) 955, 985
Bsc4I CCNNNNNNNGG 1 cut(s) 989
Bse118I RCCGGY 1 cut(s) 1291
Bse1I ACTGG 2 cut(s) 315, 731
Bse8I GATNNNNATC 1 cut(s) 510
BseAI TCCGGA 1 cut(s) 848
BseBI CCWGG 3 cut(s) 328, 415, 1191
BseDI CCNNGG 4 cut(s) 289, 327, 771, 795
BseGI GGATG 7 cut(s) 68, 309, 724, 805, 907, 983, 999
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 1 cut(s) 989
BseMII CTCAG 6 cut(s) 152, 609, 853, 876, 906, 971
BseNI ACTGG 2 cut(s) 315, 731
BseRI GAGGAG 4 cut(s) 401, 842, 1226, 1255
BseSI GKGCMC 2 cut(s) 879, 1042
BseXI GCAGC 2 cut(s) 80, 520
BshFI GGCC 2 cut(s) 332, 1136
BshNI GGYRCC 1 cut(s) 876
BshTI ACCGGT 1 cut(s) 1291
BsiHKAI GWGCWC 3 cut(s) 42, 158, 1042
BsiHKCI CYCGRG 1 cut(s) 647
BsiSI CCGG 2 cut(s) 849, 1292
BslI CCNNNNNNNGG 1 cut(s) 989
BsmAI GTCTC 2 cut(s) 301, 1266
BsnI GGCC 2 cut(s) 332, 1136
Bso31I GGTCTC 1 cut(s) 1266
BsoBI CYCGRG 1 cut(s) 647
Bsp1286I GDGCHC 4 cut(s) 42, 158, 879, 1042
Bsp13I TCCGGA 1 cut(s) 848
Bsp143I GATC 4 cut(s) 128, 483, 950, 1069
BspACI CCGC 3 cut(s) 63, 90, 405
BspANI GGCC 2 cut(s) 332, 1136
BspCNI CTCAG 6 cut(s) 151, 608, 852, 877, 907, 970
BspEI TCCGGA 1 cut(s) 848
BspLI GGNNCC 2 cut(s) 412, 878
BspMI ACCTGC 1 cut(s) 188
BspQI GCTCTTC 1 cut(s) 1086
BspT107I GGYRCC 1 cut(s) 876
BspTNI GGTCTC 1 cut(s) 1266
BsrFI RCCGGY 1 cut(s) 1291
BsrI ACTGG 2 cut(s) 315, 731
BssAI RCCGGY 1 cut(s) 1291
BssECI CCNNGG 4 cut(s) 289, 327, 771, 795
BssMI GATC 4 cut(s) 128, 483, 950, 1069
BssT1I CCWWGG 1 cut(s) 771
Bst2UI CCWGG 3 cut(s) 328, 415, 1191
Bst4CI ACNGT 3 cut(s) 317, 441, 941
Bst6I CTCTTC 6 cut(s) 8, 562, 819, 857, 1086, 1189
BstC8I GCNNGC 3 cut(s) 98, 210, 1098
BstDEI CTNAG 7 cut(s) 138, 273, 595, 839, 885, 915, 957
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 7 cut(s) 68, 309, 724, 805, 907, 983, 999
BstKTI GATC 4 cut(s) 131, 486, 953, 1072
BstMAI GTCTC 2 cut(s) 301, 1266
BstMBI GATC 4 cut(s) 128, 483, 950, 1069
BstMWI GCNNNNNNNGC 1 cut(s) 874
BstNI CCWGG 3 cut(s) 328, 415, 1191
BstSCI CCNGG 3 cut(s) 326, 413, 1189
BstSLI GKGCMC 2 cut(s) 879, 1042
BstV1I GCAGC 2 cut(s) 80, 520
BstV2I GAAGAC 3 cut(s) 789, 1064, 1226
BsuI GTATCC 1 cut(s) 913
BsuRI GGCC 2 cut(s) 332, 1136
BtgI CCRYGG 1 cut(s) 289
BtgZI GCGATG 2 cut(s) 678, 765
BtsCI GGATG 7 cut(s) 68, 309, 724, 805, 907, 983, 999
BtsIMutI CAGTG 2 cut(s) 847, 882
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 3 cut(s) 98, 210, 1098
Cfr10I RCCGGY 1 cut(s) 1291
Cfr13I GGNCC 3 cut(s) 317, 330, 1134
CpoI CGGWCCG 1 cut(s) 317
Csp6I GTAC 2 cut(s) 324, 675
CspAI ACCGGT 1 cut(s) 1291
CspI CGGWCCG 1 cut(s) 317
CviAII CATG 2 cut(s) 51, 120
CviQI GTAC 2 cut(s) 324, 675
DdeI CTNAG 7 cut(s) 138, 273, 595, 839, 885, 915, 957
DpnI GATC 4 cut(s) 130, 485, 952, 1071
DpnII GATC 4 cut(s) 128, 483, 950, 1069
DrdI GACNNNNNNGTC 1 cut(s) 315
DseDI GACNNNNNNGTC 1 cut(s) 315
Eam1104I CTCTTC 6 cut(s) 8, 562, 819, 857, 1086, 1189
EarI CTCTTC 6 cut(s) 8, 562, 819, 857, 1086, 1189
Eco130I CCWWGG 1 cut(s) 771
Eco31I GGTCTC 1 cut(s) 1266
Eco47I GGWCC 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 647
EcoRII CCWGG 3 cut(s) 326, 413, 1189
EcoT14I CCWWGG 1 cut(s) 771
ErhI CCWWGG 1 cut(s) 771
FaeI CATG 2 cut(s) 54, 123
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FatI CATG 2 cut(s) 50, 119
FauI CCCGC 1 cut(s) 412
FbaI TGATCA 2 cut(s) 483, 1069
Fnu4HI GCNGC 3 cut(s) 91, 94, 534
FokI GGATG 7 cut(s) 55, 316, 731, 812, 914, 970, 1006
Fsp4HI GCNGC 3 cut(s) 91, 94, 534
FspBI CTAG 3 cut(s) 948, 1107, 1154
GluI GCNGC 3 cut(s) 91, 94, 534
HaeIII GGCC 2 cut(s) 332, 1136
HapII CCGG 2 cut(s) 849, 1292
Hin1II CATG 2 cut(s) 54, 123
HincII GTYRAC 1 cut(s) 1180
HindII GTYRAC 1 cut(s) 1180
HindIII AAGCTT 2 cut(s) 44, 731
HinfI GANTC 9 cut(s) 106, 136, 187, 246, 837, 845, 887, 1197, 1202
HpaII CCGG 2 cut(s) 849, 1292
HphI GGTGA 2 cut(s) 169, 587
Hpy166II GTNNAC 3 cut(s) 836, 1040, 1180
Hpy188I TCNGA 5 cut(s) 76, 321, 598, 892, 960
Hpy188III TCNNGA 7 cut(s) 191, 250, 340, 649, 849, 948, 1142
Hpy8I GTNNAC 3 cut(s) 836, 1040, 1180
HpyAV CCTTC 6 cut(s) 374, 513, 578, 665, 709, 1089
HpyCH4III ACNGT 3 cut(s) 317, 441, 941
HpyCH4IV ACGT 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 874
HpyF3I CTNAG 7 cut(s) 138, 273, 595, 839, 885, 915, 957
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 2 cut(s) 54, 123
Kpn2I TCCGGA 1 cut(s) 848
Ksp22I TGATCA 2 cut(s) 483, 1069
Kzo9I GATC 4 cut(s) 128, 483, 950, 1069
LguI GCTCTTC 1 cut(s) 1086
LmnI GCTCC 1 cut(s) 545
Lsp1109I GCAGC 2 cut(s) 80, 520
LweI GCATC 2 cut(s) 489, 1109
MaeI CTAG 3 cut(s) 948, 1107, 1154
MaeII ACGT 1 cut(s) 201
MalI GATC 4 cut(s) 130, 485, 952, 1071
MboI GATC 4 cut(s) 128, 483, 950, 1069
MhlI GDGCHC 4 cut(s) 42, 158, 879, 1042
MluCI AATT 4 cut(s) 343, 358, 1158, 1299
MlyI GAGTC 5 cut(s) 100, 130, 831, 896, 1206
MmeI TCCRAC 1 cut(s) 99
MroI TCCGGA 1 cut(s) 848
MroXI GAANNNNTTC 2 cut(s) 233, 743
MseI TTAA 2 cut(s) 357, 1226
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 2 cut(s) 849, 1292
MspR9I CCNGG 3 cut(s) 328, 415, 1191
MvaI CCWGG 3 cut(s) 328, 415, 1191
MwoI GCNNNNNNNGC 1 cut(s) 874
NdeII GATC 4 cut(s) 128, 483, 950, 1069
NlaIII CATG 2 cut(s) 54, 123
NlaIV GGNNCC 2 cut(s) 412, 878
PaeR7I CTCGAG 1 cut(s) 647
PaqCI CACCTGC 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 1086
PdmI GAANNNNTTC 2 cut(s) 233, 743
PfeI GAWTC 4 cut(s) 187, 246, 845, 1202
PfoI TCCNGGA 1 cut(s) 1189
PinAI ACCGGT 1 cut(s) 1291
PkrI GCNGC 3 cut(s) 92, 95, 535
PleI GAGTC 5 cut(s) 100, 130, 831, 895, 1205
PpsI GAGTC 5 cut(s) 100, 130, 831, 895, 1205
Psp6I CCWGG 3 cut(s) 326, 413, 1189
PspGI CCWGG 3 cut(s) 326, 413, 1189
PspN4I GGNNCC 2 cut(s) 412, 878
PspPI GGNCC 3 cut(s) 317, 330, 1134
RsaI GTAC 2 cut(s) 325, 676
RsaNI GTAC 2 cut(s) 324, 675
RseI CAYNNNNRTG 1 cut(s) 165
Rsr2I CGGWCCG 1 cut(s) 317
RsrII CGGWCCG 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 1086
SaqAI TTAA 2 cut(s) 357, 1226
SatI GCNGC 3 cut(s) 91, 94, 534
Sau3AI GATC 4 cut(s) 128, 483, 950, 1069
Sau96I GGNCC 3 cut(s) 317, 330, 1134
SchI GAGTC 5 cut(s) 100, 130, 831, 896, 1206
ScrFI CCNGG 3 cut(s) 328, 415, 1191
SduI GDGCHC 4 cut(s) 42, 158, 879, 1042
SfaNI GCATC 2 cut(s) 489, 1109
Sfr274I CTCGAG 1 cut(s) 647
SinI GGWCC 1 cut(s) 317
SlaI CTCGAG 1 cut(s) 647
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 4 cut(s) 41, 647, 734, 1142
SmoI CTYRAG 4 cut(s) 41, 647, 734, 1142
Sse9I AATT 4 cut(s) 343, 358, 1158, 1299
SsiI CCGC 3 cut(s) 63, 90, 405
SspI AATATT 1 cut(s) 928
SspMI CTAG 3 cut(s) 948, 1107, 1154
StyD4I CCNGG 3 cut(s) 326, 413, 1189
StyI CCWWGG 1 cut(s) 771
TaaI ACNGT 3 cut(s) 317, 441, 941
TaiI ACGT 1 cut(s) 204
TaqI TCGA 6 cut(s) 190, 251, 648, 1023, 1200, 1205
TasI AATT 4 cut(s) 343, 358, 1158, 1299
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 4 cut(s) 187, 246, 845, 1202
Tru1I TTAA 2 cut(s) 357, 1226
Tru9I TTAA 2 cut(s) 357, 1226
TscAI CASTG 2 cut(s) 847, 889
TseI GCWGC 2 cut(s) 93, 533
TspDTI ATGAA 9 cut(s) 39, 57, 226, 542, 597, 684, 774, 837, 1301
TspRI CASTG 2 cut(s) 847, 889
VneI GTGCAC 1 cut(s) 1038
VpaK11BI GGWCC 1 cut(s) 317
XbaI TCTAGA 1 cut(s) 947
XhoI CTCGAG 1 cut(s) 647
XmnI GAANNNNTTC 2 cut(s) 233, 743
XspI CTAG 3 cut(s) 948, 1107, 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.