RchiOBHm_Chr6g0302331

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000556
Physical Location & Seq
Forward (+)
62478600 .. 62479175
576 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27159

Sequence Viewer

Length: 576 bp
ATGCCGCTTGGACCCCGACGACATTGCGCTCATATTTCGACAGCAGCTTATATTCAACTAAATACAACGTTGCTAACAATTCCATTCGACCTCTTATGGTGCAAACCAATGCCTGGCTTTACAACGTCGAACGATTGTCTAGTTCAGATTGGTGGTTACAATGACGAAGAACGTAGGGTCAGGTTTTTCGAGTTCTGTCCGGATTGTGATTGGAATGAGATTGAGTACGGTTTAGCCGTTCTGCTATGGTACTCAGCCAATGACATTCTGGCAGATGGTCGAGAGATCATTATCGGCGACCGGGGACAGTTCAACTACGAGTTTTATCTCAAAACTGAATCTACTCAAAACGTGTACAATTTTCCATTCCTTCTCAAGACCTATGACCCTTACGTGGAAAACAATCTATATCCATTTGCTTTCCTCAACGTCAATGGAAACCTATTCATTTTTGCCAATAATCGAGATATATTGCTTGATTATATTACCAACAACGTTGTTAAAATGTACCCTCAGATACTTGTAGGGAACCAAGGTCTTATCTACGAACCGGTTCAGAGGTTTTGCTGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

191

Amino Acids

22.29

Weight (kDa)

4.76

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 25 - 175 1.3e-46 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 1 cut(s) 5
AclI AACGTT 2 cut(s) 68, 495
AfaI GTAC 4 cut(s) 227, 251, 356, 509
AfiI CCNNNNNNNGG 2 cut(s) 113, 394
AflIII ACRYGT 1 cut(s) 351
AgeI ACCGGT 1 cut(s) 550
AgsI TTSAA 2 cut(s) 56, 313
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Aor13HI TCCGGA 1 cut(s) 199
ApeKI GCWGC 2 cut(s) 44, 567
AsiGI ACCGGT 1 cut(s) 550
Asp700I GAANNNNTTC 1 cut(s) 552
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 11
AsuC2I CCSGG 1 cut(s) 302
AvaII GGWCC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 56, 554
BccI CCATC 1 cut(s) 269
BceAI ACGGC 1 cut(s) 221
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BciT130I CCWGG 1 cut(s) 114
BcnI CCSGG 1 cut(s) 302
BfaI CTAG 1 cut(s) 140
BisI GCNGC 3 cut(s) 5, 45, 568
BlsI GCNGC 3 cut(s) 6, 46, 569
Bme1390I CCNGG 2 cut(s) 114, 302
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 2 cut(s) 13, 530
BmrFI CCNGG 2 cut(s) 114, 302
BpuEI CTTGAG 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 394
BsaBI GATNNNNATC 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 301, 532
BsaWI WCCGGW 2 cut(s) 199, 550
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 394
Bse118I RCCGGY 1 cut(s) 550
Bse3DI GCAATG 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 290
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 301, 532
BseJI GATNNNNATC 1 cut(s) 290
BseLI CCNNNNNNNGG 2 cut(s) 113, 394
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 2 cut(s) 267, 527
BseXI GCAGC 2 cut(s) 56, 554
Bsh1285I CGRYCG 1 cut(s) 301
BshTI ACCGGT 1 cut(s) 550
BsiEI CGRYCG 1 cut(s) 301
BsiSI CCGG 3 cut(s) 200, 301, 551
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 2 cut(s) 113, 394
BsmFI GGGAC 1 cut(s) 318
Bsp13I TCCGGA 1 cut(s) 199
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 1 cut(s) 285
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 266, 526
BspEI TCCGGA 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 13, 530
BsrDI GCAATG 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 550
BsrGI TGTACA 1 cut(s) 354
BssAI RCCGGY 1 cut(s) 550
BssECI CCNNGG 2 cut(s) 301, 532
BssMI GATC 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 532
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 230, 309
BstAUI TGTACA 1 cut(s) 354
BstBAI YACGTR 1 cut(s) 394
BstDEI CTNAG 2 cut(s) 253, 513
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 1 cut(s) 288
BstMBI GATC 1 cut(s) 285
BstMCI CGRYCG 1 cut(s) 301
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 2 cut(s) 112, 300
BstV1I GCAGC 2 cut(s) 56, 554
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 11
Csp6I GTAC 4 cut(s) 226, 250, 355, 508
CspAI ACCGGT 1 cut(s) 550
CviJI RGCY 4 cut(s) 47, 117, 236, 257
CviKI_1 RGCY 4 cut(s) 47, 117, 236, 257
CviQI GTAC 4 cut(s) 226, 250, 355, 508
DdeI CTNAG 2 cut(s) 253, 513
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 532
ErhI CCWWGG 1 cut(s) 532
FaiI YATR 8 cut(s) 33, 51, 97, 247, 384, 409, 470, 483
FaqI GGGAC 1 cut(s) 318
Fnu4HI GCNGC 3 cut(s) 5, 45, 568
Fsp4HI GCNGC 3 cut(s) 5, 45, 568
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 28
GluI GCNGC 3 cut(s) 5, 45, 568
HapII CCGG 3 cut(s) 200, 301, 551
HhaI GCGC 1 cut(s) 29
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 1 cut(s) 338
HpaII CCGG 3 cut(s) 200, 301, 551
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 3 cut(s) 147, 516, 558
Hpy188III TCNNGA 4 cut(s) 200, 281, 376, 464
Hpy8I GTNNAC 1 cut(s) 355
Hpy99I CGWCG 2 cut(s) 21, 130
HpyAV CCTTC 1 cut(s) 380
HpyCH4III ACNGT 2 cut(s) 230, 309
HpyCH4IV ACGT 7 cut(s) 68, 125, 172, 351, 393, 429, 495
HpyCH4V TGCA 1 cut(s) 102
HpyF3I CTNAG 2 cut(s) 253, 513
HpySE526I ACGT 7 cut(s) 68, 125, 172, 351, 393, 429, 495
HspAI GCGC 1 cut(s) 27
Kpn2I TCCGGA 1 cut(s) 199
Kzo9I GATC 1 cut(s) 285
LpnPI CCDG 7 cut(s) 99, 126, 166, 213, 254, 314, 564
Lsp1109I GCAGC 2 cut(s) 56, 554
MaeI CTAG 1 cut(s) 140
MaeII ACGT 7 cut(s) 68, 125, 172, 351, 393, 429, 495
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 287
MboI GATC 1 cut(s) 285
MboII GAAGA 1 cut(s) 179
MluCI AATT 2 cut(s) 78, 358
MnlI CCTC 4 cut(s) 101, 434, 522, 552
MroI TCCGGA 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 552
MseI TTAA 2 cut(s) 501, 574
MspI CCGG 3 cut(s) 200, 301, 551
MspR9I CCNGG 2 cut(s) 114, 302
MvaI CCWGG 1 cut(s) 114
NciI CCSGG 1 cut(s) 302
NdeII GATC 1 cut(s) 285
NlaIV GGNNCC 2 cut(s) 13, 530
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 1 cut(s) 338
PflMI CCANNNNNTGG 1 cut(s) 113
PinAI ACCGGT 1 cut(s) 550
PkrI GCNGC 3 cut(s) 6, 46, 569
Ppu21I YACGTR 1 cut(s) 394
Psp1406I AACGTT 2 cut(s) 68, 495
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 13, 530
PspPI GGNCC 1 cut(s) 11
RsaI GTAC 4 cut(s) 227, 251, 356, 509
RsaNI GTAC 4 cut(s) 226, 250, 355, 508
SaqAI TTAA 2 cut(s) 501, 574
SatI GCNGC 3 cut(s) 5, 45, 568
Sau3AI GATC 1 cut(s) 285
Sau96I GGNCC 1 cut(s) 11
ScrFI CCNGG 2 cut(s) 114, 302
SinI GGWCC 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 2 cut(s) 78, 358
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 112, 300
StyI CCWWGG 1 cut(s) 532
TaaI ACNGT 2 cut(s) 230, 309
TaiI ACGT 7 cut(s) 71, 128, 175, 354, 396, 432, 498
TaqI TCGA 6 cut(s) 38, 87, 128, 189, 280, 463
TasI AATT 2 cut(s) 78, 358
TatI WGTACW 1 cut(s) 354
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 2 cut(s) 501, 574
Tru9I TTAA 2 cut(s) 501, 574
TseI GCWGC 2 cut(s) 44, 567
TspDTI ATGAA 1 cut(s) 436
Van91I CCANNNNNTGG 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.