Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8182314.1

Orthogroup ID

OG0000556

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 554

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8182314.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 553 bp

atgaaagcgcacagtttaccttttcttgctgagacaagtgacggcagcgccatagagaacaatctctacccttttgtctttctcaaccttgacggcaatctttttatttttgccaacaatagagctatattgtacgactatgttgctggtaaaacagtgaagacgtaccccacaatacccggtggagacccaaggtcgtatccgagcaccggttcagcggtgttgctacctctcaagacttcaaaaggtcaggctgtggtagctgaggttctggtttgcggtggagctcccaaaggctcttatcttaaagccgaaagcgaaactttcgtcccagcattgaagacatgcgctcggatcaagataaccgacccgaagccgcagtgggttgtggagaacatgcctctagctagagtcatgggtgacatgacgttactagccaacggtgacgttctaattatcaacggtgccggatcaggtaccgccgggtgggagctcgggcggaacccggtattgaatccggttgtttacaaacccgataatgcggtcgggtcac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1929 Glyoxal_oxid_N

Protein Analysis

184

Amino Acids

19.5

Weight (kDa)

7.71

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19900 AT1G75620
fragaria_vesca	FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica	MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica	Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis	pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis	RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata	RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora	Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii	Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa	Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha	Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana	Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	476
AccB1I	GGYRCC	2 cut(s)	464, 476
AciI	CCGC	6 cut(s)	218, 279, 377, 480, 499, 542
AclWI	GGATC	2 cut(s)	362, 478
AfaI	GTAC	3 cut(s)	134, 167, 478
AfiI	CCNNNNNNNGG	2 cut(s)	209, 486
AgeI	ACCGGT	1 cut(s)	209
AgsI	TTSAA	3 cut(s)	243, 340, 514
AhdI	GACNNNNNGTC	1 cut(s)	193
AluBI	AGCT	5 cut(s)	125, 263, 287, 407, 493
AluI	AGCT	5 cut(s)	125, 263, 287, 407, 493
Alw21I	GWGCWC	3 cut(s)	209, 289, 495
Alw26I	GTCTC	2 cut(s)	26, 180
AlwI	GGATC	2 cut(s)	362, 478
Ama87I	CYCGRG	1 cut(s)	494
ApeKI	GCWGC	1 cut(s)	45
ArsI	GACNNNNNNTTYG	2 cut(s)	312, 344
AsiGI	ACCGGT	1 cut(s)	209
Asp718I	GGTACC	1 cut(s)	476
AspLEI	GCGC	3 cut(s)	10, 50, 350
AsuC2I	CCSGG	3 cut(s)	180, 484, 506
AsuHPI	GGTGA	2 cut(s)	431, 455
AvaI	CYCGRG	1 cut(s)	494
BanI	GGYRCC	2 cut(s)	464, 476
BanII	GRGCYC	2 cut(s)	289, 495
BbsI	GAAGAC	2 cut(s)	167, 347
Bbv12I	GWGCWC	3 cut(s)	209, 289, 495
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	57
BceAI	ACGGC	2 cut(s)	58, 109
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciVI	GTATCC	1 cut(s)	210
BcnI	CCSGG	3 cut(s)	180, 484, 506
BcoDI	GTCTC	2 cut(s)	26, 180
BfaI	CTAG	3 cut(s)	404, 408, 434
BfoI	RGCGCY	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	210
BisI	GCNGC	2 cut(s)	46, 377
BlsI	GCNGC	2 cut(s)	47, 378
Bme1390I	CCNGG	3 cut(s)	180, 484, 506
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	494
BmiI	GGNNCC	3 cut(s)	466, 478, 503
BmrFI	CCNGG	3 cut(s)	180, 484, 506
BpiI	GAAGAC	2 cut(s)	167, 347
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	3 cut(s)	180, 484, 506
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	191
BsaWI	WCCGGW	2 cut(s)	209, 517
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 486
Bse118I	RCCGGY	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	191
BseLI	CCNNNNNNNGG	2 cut(s)	209, 486
BseMII	CTCAG	2 cut(s)	21, 255
BseXI	GCAGC	1 cut(s)	57
BseYI	CCCAGC	1 cut(s)	331
Bsh1285I	CGRYCG	1 cut(s)	546
BshNI	GGYRCC	2 cut(s)	464, 476
BshTI	ACCGGT	1 cut(s)	209
BsiEI	CGRYCG	1 cut(s)	546
BsiHKAI	GWGCWC	3 cut(s)	209, 289, 495
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	6 cut(s)	180, 210, 468, 483, 506, 518
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	209, 486
BsmAI	GTCTC	2 cut(s)	26, 180
BsmFI	GGGAC	1 cut(s)	314
Bso31I	GGTCTC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	494
Bsp1286I	GDGCHC	3 cut(s)	209, 289, 495
Bsp143I	GATC	2 cut(s)	354, 470
BspACI	CCGC	6 cut(s)	218, 279, 377, 480, 499, 542
BspCNI	CTCAG	2 cut(s)	22, 256
BspLI	GGNNCC	3 cut(s)	466, 478, 503
BspPI	GGATC	2 cut(s)	362, 478
BspT107I	GGYRCC	2 cut(s)	464, 476
BspTNI	GGTCTC	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	2 cut(s)	354, 470
BssT1I	CCWWGG	1 cut(s)	191
Bst4CI	ACNGT	4 cut(s)	14, 157, 443, 464
BstDEI	CTNAG	2 cut(s)	30, 264
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	3 cut(s)	10, 50, 350
BstKTI	GATC	2 cut(s)	357, 473
BstMAI	GTCTC	2 cut(s)	26, 180
BstMBI	GATC	2 cut(s)	354, 470
BstMCI	CGRYCG	1 cut(s)	546
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNSI	RCATGY	2 cut(s)	348, 400
BstSCI	CCNGG	3 cut(s)	178, 482, 504
BstV1I	GCAGC	1 cut(s)	57
BstV2I	GAAGAC	2 cut(s)	167, 347
BsuI	GTATCC	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	386
BtsIMutI	CAGTG	2 cut(s)	162, 386
CfoI	GCGC	3 cut(s)	10, 50, 350
Cfr10I	RCCGGY	1 cut(s)	209
Csp6I	GTAC	3 cut(s)	133, 166, 477
CspAI	ACCGGT	1 cut(s)	209
CviAII	CATG	4 cut(s)	345, 397, 415, 424
CviQI	GTAC	3 cut(s)	133, 166, 477
DdeI	CTNAG	2 cut(s)	30, 264
DpnI	GATC	2 cut(s)	356, 472
DpnII	GATC	2 cut(s)	354, 470
DriI	GACNNNNNGTC	1 cut(s)	193
Eam1105I	GACNNNNNGTC	1 cut(s)	193
EciI	GGCGGA	1 cut(s)	514
Ecl136II	GAGCTC	2 cut(s)	287, 493
Eco130I	CCWWGG	1 cut(s)	191
Eco24I	GRGCYC	2 cut(s)	289, 495
Eco31I	GGTCTC	1 cut(s)	180
Eco53kI	GAGCTC	2 cut(s)	287, 493
Eco88I	CYCGRG	1 cut(s)	494
EcoICRI	GAGCTC	2 cut(s)	287, 493
EcoT14I	CCWWGG	1 cut(s)	191
EcoT38I	GRGCYC	2 cut(s)	289, 495
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	4 cut(s)	348, 400, 418, 427
FaiI	YATR	7 cut(s)	53, 128, 141, 346, 398, 416, 425
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	4 cut(s)	344, 396, 414, 423
Fnu4HI	GCNGC	2 cut(s)	46, 377
FriOI	GRGCYC	2 cut(s)	289, 495
Fsp4HI	GCNGC	2 cut(s)	46, 377
FspBI	CTAG	3 cut(s)	404, 408, 434
GlaI	GCGC	3 cut(s)	9, 49, 349
GluI	GCNGC	2 cut(s)	46, 377
GsaI	CCCAGC	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	51
HapII	CCGG	6 cut(s)	180, 210, 468, 483, 506, 518
HhaI	GCGC	3 cut(s)	10, 50, 350
Hin1II	CATG	4 cut(s)	348, 400, 418, 427
Hin6I	GCGC	3 cut(s)	8, 48, 348
HinP1I	GCGC	3 cut(s)	8, 48, 348
HinfI	GANTC	2 cut(s)	411, 514
HpaII	CCGG	6 cut(s)	180, 210, 468, 483, 506, 518
HphI	GGTGA	2 cut(s)	431, 455
Hpy166II	GTNNAC	2 cut(s)	17, 526
Hpy188I	TCNGA	2 cut(s)	204, 354
Hpy188III	TCNNGA	2 cut(s)	235, 358
Hpy8I	GTNNAC	2 cut(s)	17, 526
HpyCH4III	ACNGT	4 cut(s)	14, 157, 443, 464
HpyCH4IV	ACGT	3 cut(s)	164, 428, 447
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	30, 264
HpySE526I	ACGT	3 cut(s)	164, 428, 447
Hsp92II	CATG	4 cut(s)	348, 400, 418, 427
HspAI	GCGC	3 cut(s)	8, 48, 348
KpnI	GGTACC	1 cut(s)	480
Kzo9I	GATC	2 cut(s)	354, 470
LmnI	GCTCC	3 cut(s)	284, 292, 490
Lsp1109I	GCAGC	1 cut(s)	57
MaeI	CTAG	3 cut(s)	404, 408, 434
MaeII	ACGT	3 cut(s)	164, 428, 447
MaeIII	GTNAC	4 cut(s)	38, 419, 429, 443
MalI	GATC	2 cut(s)	356, 472
MboI	GATC	2 cut(s)	354, 470
MboII	GAAGA	2 cut(s)	172, 352
MhlI	GDGCHC	3 cut(s)	209, 289, 495
MluCI	AATT	1 cut(s)	453
MlyI	GAGTC	1 cut(s)	420
MnlI	CCTC	3 cut(s)	240, 259, 411
MseI	TTAA	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	6 cut(s)	180, 210, 468, 483, 506, 518
MspR9I	CCNGG	3 cut(s)	180, 484, 506
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	3 cut(s)	180, 484, 506
NdeII	GATC	2 cut(s)	354, 470
NlaIII	CATG	4 cut(s)	348, 400, 418, 427
NlaIV	GGNNCC	3 cut(s)	466, 478, 503
NmuCI	GTSAC	3 cut(s)	38, 419, 443
NspI	RCATGY	2 cut(s)	348, 400
PfeI	GAWTC	1 cut(s)	514
PinAI	ACCGGT	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	47, 378
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
Psp124BI	GAGCTC	2 cut(s)	289, 495
PspFI	CCCAGC	1 cut(s)	331
PspN4I	GGNNCC	3 cut(s)	466, 478, 503
PsrI	GAACNNNNNNTAC	4 cut(s)	50, 82, 252, 284
RsaI	GTAC	3 cut(s)	134, 167, 478
RsaNI	GTAC	3 cut(s)	133, 166, 477
SacI	GAGCTC	2 cut(s)	289, 495
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	2 cut(s)	46, 377
Sau3AI	GATC	2 cut(s)	354, 470
SchI	GAGTC	1 cut(s)	420
ScrFI	CCNGG	3 cut(s)	180, 484, 506
SduI	GDGCHC	3 cut(s)	209, 289, 495
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	453
SsiI	CCGC	6 cut(s)	218, 279, 377, 480, 499, 542
SspMI	CTAG	3 cut(s)	404, 408, 434
SstI	GAGCTC	2 cut(s)	289, 495
StyD4I	CCNGG	3 cut(s)	178, 482, 504
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	4 cut(s)	14, 157, 443, 464
TaiI	ACGT	3 cut(s)	167, 431, 450
TasI	AATT	1 cut(s)	453
TauI	GCSGC	1 cut(s)	379
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	162, 386
TseFI	GTSAC	3 cut(s)	38, 419, 443
TseI	GCWGC	1 cut(s)	45
Tsp45I	GTSAC	3 cut(s)	38, 419, 443
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	162, 386
XceI	RCATGY	2 cut(s)	348, 400
XspI	CTAG	3 cut(s)	404, 408, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.