Rmu_co8328361.1_g000001

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8328361.1
OG0000556
Physical Location & Seq
Reverse (-)
2 .. 956
955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8328361.1_g000001.1.cds

Sequence Viewer

Length: 955 bp
atgttcgaccgcaccgacttcggaaaatccaacctccccctccccaacggcgtctgccgcaacaacccccacgatacggagcttaaagtcgactgcacggcccactccgccgagtacgacgtggcgtccaacaaagtccgtcctctgtttgtgtactccgacgtgtggtgctcctcggggtcagtaaaccccagcggaagtctagtccagacgggaggtttcaacgacggagacagaagagtgcgggtttttgatccgtgtcctacttgtgactggaaagagattgagttcgggttagtcaaccggagatggtacgccaccaatcatattcttccagatggacgccagataatcatcggcggacggcggcagttcaactacgagttttaccccaaaagtggaggctcaatgaacgcgcacagtttaccttttcttgttgagacaagtgatggcgacgccatagagaataatctctacccttttgtctttctcaattttgacggcaatctttttatctttgccaacaatagagctatattgtacgactatgttgctggtaaaatagtgaagacgtaccccacaatacccggtggagacccgaggtcgtatccgagcactggttcagcggtgttgctacctctcaagacttctaaaggtcaggttgtggcagctgaggttctggtttgcggtggagctcccaaaggctcttatgttaaggccgaaagtgggactttcgtgccagcattgaagacatgcgctaggatcatgataaccgacccgaacccgcaatgggttgtggaaaacatgcctctagccagagtcatgggtgacatgacgttactagccaacggtgacgttttaattatcaacggtgccggatcaggtaccgcggggtggcagctcgggcggaacccggtactgaacccagttgtttacaagcccgataatgcagttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

318

Amino Acids

34.66

Weight (kDa)

6.43

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 884
AccB1I GGYRCC 2 cut(s) 872, 884
AccI GTMKAC 1 cut(s) 90
AccII CGCG 2 cut(s) 416, 890
AclWI GGATC 3 cut(s) 248, 770, 886
AcyI GRCGYC 4 cut(s) 51, 125, 343, 456
AfaI GTAC 7 cut(s) 116, 155, 314, 542, 575, 886, 918
AfiI CCNNNNNNNGG 7 cut(s) 76, 165, 398, 617, 726, 790, 894
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 3 cut(s) 223, 376, 748
AhdI GACNNNNNGTC 2 cut(s) 124, 601
AjiI CACGTC 2 cut(s) 121, 163
AluBI AGCT 5 cut(s) 82, 533, 671, 695, 901
AluI AGCT 5 cut(s) 82, 533, 671, 695, 901
Alw21I GWGCWC 3 cut(s) 173, 617, 697
Alw26I GTCTC 3 cut(s) 225, 434, 588
AlwI GGATC 3 cut(s) 248, 770, 886
Ama87I CYCGRG 3 cut(s) 175, 598, 902
AoxI GGCC 2 cut(s) 99, 717
ApeKI GCWGC 2 cut(s) 668, 898
Asp718I GGTACC 1 cut(s) 884
AspLEI GCGC 2 cut(s) 418, 758
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 2 cut(s) 588, 914
AsuHPI GGTGA 2 cut(s) 839, 863
AvaI CYCGRG 3 cut(s) 175, 598, 902
BanI GGYRCC 2 cut(s) 872, 884
BanII GRGCYC 1 cut(s) 697
BbsI GAAGAC 2 cut(s) 575, 755
Bbv12I GWGCWC 3 cut(s) 173, 617, 697
BbvCI CCTCAGC 1 cut(s) 672
BbvI GCAGC 2 cut(s) 680, 910
BccI CCATC 3 cut(s) 303, 332, 443
BceAI ACGGC 4 cut(s) 64, 114, 380, 517
BcgI CGANNNNNNTGC 3 cut(s) 35, 533, 567
BciVI GTATCC 1 cut(s) 618
BcnI CCSGG 2 cut(s) 588, 914
BcoDI GTCTC 3 cut(s) 225, 434, 588
BfaI CTAG 4 cut(s) 203, 759, 812, 842
BfuI GTATCC 1 cut(s) 618
BisI GCNGC 4 cut(s) 58, 368, 669, 899
BlsI GCNGC 4 cut(s) 59, 369, 670, 900
Bme1390I CCNGG 2 cut(s) 588, 914
BmeRI GACNNNNNGTC 2 cut(s) 124, 601
BmeT110I CYCGRG 3 cut(s) 175, 598, 902
BmgBI CACGTC 2 cut(s) 121, 163
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 3 cut(s) 874, 886, 911
BmrFI CCNGG 2 cut(s) 588, 914
BmrI ACTGGG 1 cut(s) 920
BmuI ACTGGG 1 cut(s) 920
BpiI GAAGAC 2 cut(s) 575, 755
Bpu10I CCTNAGC 1 cut(s) 672
BpuEI CTTGAG 1 cut(s) 626
BpuMI CCSGG 2 cut(s) 588, 914
BsaBI GATNNNNATC 1 cut(s) 353
BsaHI GRCGYC 4 cut(s) 51, 125, 343, 456
BsaI GGTCTC 1 cut(s) 588
BsaJI CCNNGG 3 cut(s) 174, 599, 888
BsaWI WCCGGW 1 cut(s) 303
Bsc4I CCNNNNNNNGG 7 cut(s) 76, 165, 398, 617, 726, 790, 894
Bse1I ACTGG 3 cut(s) 278, 622, 926
Bse3DI GCAATG 1 cut(s) 794
Bse8I GATNNNNATC 1 cut(s) 353
BseDI CCNNGG 3 cut(s) 174, 599, 888
BseJI GATNNNNATC 1 cut(s) 353
BseLI CCNNNNNNNGG 7 cut(s) 76, 165, 398, 617, 726, 790, 894
BseMI GCAATG 1 cut(s) 794
BseMII CTCAG 1 cut(s) 663
BseNI ACTGG 3 cut(s) 278, 622, 926
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 680, 910
BseYI CCCAGC 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 79
Bsh1236I CGCG 2 cut(s) 416, 890
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 2 cut(s) 101, 719
BshNI GGYRCC 2 cut(s) 872, 884
BsiEI CGRYCG 1 cut(s) 10
BsiHKAI GWGCWC 3 cut(s) 173, 617, 697
BsiHKCI CYCGRG 3 cut(s) 175, 598, 902
BsiSI CCGG 4 cut(s) 304, 588, 876, 914
BslFI GGGAC 1 cut(s) 742
BslI CCNNNNNNNGG 7 cut(s) 76, 165, 398, 617, 726, 790, 894
BsmAI GTCTC 3 cut(s) 225, 434, 588
BsmFI GGGAC 1 cut(s) 742
BsnI GGCC 2 cut(s) 101, 719
Bso31I GGTCTC 1 cut(s) 588
BsoBI CYCGRG 3 cut(s) 175, 598, 902
Bsp1286I GDGCHC 3 cut(s) 173, 617, 697
Bsp143I GATC 3 cut(s) 253, 762, 878
BspANI GGCC 2 cut(s) 101, 719
BspCNI CTCAG 1 cut(s) 664
BspFNI CGCG 2 cut(s) 416, 890
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 3 cut(s) 874, 886, 911
BspPI GGATC 3 cut(s) 248, 770, 886
BspT107I GGYRCC 2 cut(s) 872, 884
BspTNI GGTCTC 1 cut(s) 588
BsrDI GCAATG 1 cut(s) 794
BsrI ACTGG 3 cut(s) 278, 622, 926
BssECI CCNNGG 3 cut(s) 174, 599, 888
BssMI GATC 3 cut(s) 253, 762, 878
BssNI GRCGYC 4 cut(s) 51, 125, 343, 456
Bst4CI ACNGT 3 cut(s) 422, 851, 872
Bst6I CTCTTC 1 cut(s) 232
BstACI GRCGYC 4 cut(s) 51, 125, 343, 456
BstC8I GCNNGC 1 cut(s) 741
BstDEI CTNAG 1 cut(s) 672
BstDSI CCRYGG 1 cut(s) 888
BstFNI CGCG 2 cut(s) 416, 890
BstHHI GCGC 2 cut(s) 418, 758
BstKTI GATC 3 cut(s) 256, 765, 881
BstMAI GTCTC 3 cut(s) 225, 434, 588
BstMBI GATC 3 cut(s) 253, 762, 878
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 3 cut(s) 57, 107, 904
BstNSI RCATGY 2 cut(s) 756, 808
BstSCI CCNGG 2 cut(s) 586, 912
BstUI CGCG 2 cut(s) 416, 890
BstV1I GCAGC 2 cut(s) 680, 910
BstV2I GAAGAC 2 cut(s) 575, 755
BstXI CCANNNNNNTGG 1 cut(s) 823
BsuI GTATCC 1 cut(s) 618
BsuRI GGCC 2 cut(s) 101, 719
BtgI CCRYGG 1 cut(s) 888
BtrI CACGTC 2 cut(s) 121, 163
BtsIMutI CAGTG 1 cut(s) 615
Cac8I GCNNGC 1 cut(s) 741
CciI TCATGA 1 cut(s) 765
CfoI GCGC 2 cut(s) 418, 758
Cfr13I GGNCC 1 cut(s) 100
Cfr42I CCGCGG 1 cut(s) 891
CseI GACGC 4 cut(s) 40, 114, 351, 464
Csp6I GTAC 7 cut(s) 115, 154, 313, 541, 574, 885, 917
CviAII CATG 5 cut(s) 753, 766, 805, 823, 832
CviQI GTAC 7 cut(s) 115, 154, 313, 541, 574, 885, 917
DdeI CTNAG 1 cut(s) 672
DpnI GATC 3 cut(s) 255, 764, 880
DpnII GATC 3 cut(s) 253, 762, 878
DriI GACNNNNNGTC 2 cut(s) 124, 601
Eam1104I CTCTTC 1 cut(s) 232
Eam1105I GACNNNNNGTC 2 cut(s) 124, 601
EarI CTCTTC 1 cut(s) 232
EciI GGCGGA 3 cut(s) 97, 375, 922
Ecl136II GAGCTC 1 cut(s) 695
Eco24I GRGCYC 1 cut(s) 697
Eco31I GGTCTC 1 cut(s) 588
Eco53kI GAGCTC 1 cut(s) 695
Eco88I CYCGRG 3 cut(s) 175, 598, 902
EcoICRI GAGCTC 1 cut(s) 695
EcoT38I GRGCYC 1 cut(s) 697
FaeI CATG 5 cut(s) 756, 769, 808, 826, 835
FalI AAGNNNNNCTT 2 cut(s) 715, 747
FaqI GGGAC 1 cut(s) 742
FatI CATG 5 cut(s) 752, 765, 804, 822, 831
FauI CCCGC 3 cut(s) 237, 792, 883
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 58, 368, 669, 899
FriOI GRGCYC 1 cut(s) 697
Fsp4HI GCNGC 4 cut(s) 58, 368, 669, 899
FspBI CTAG 4 cut(s) 203, 759, 812, 842
GlaI GCGC 2 cut(s) 417, 757
GluI GCNGC 4 cut(s) 58, 368, 669, 899
GsaI CCCAGC 1 cut(s) 195
HaeIII GGCC 2 cut(s) 101, 719
HapII CCGG 4 cut(s) 304, 588, 876, 914
HgaI GACGC 4 cut(s) 40, 114, 351, 464
HhaI GCGC 2 cut(s) 418, 758
Hin1I GRCGYC 4 cut(s) 51, 125, 343, 456
Hin1II CATG 5 cut(s) 756, 769, 808, 826, 835
Hin6I GCGC 2 cut(s) 416, 756
HinP1I GCGC 2 cut(s) 416, 756
HincII GTYRAC 2 cut(s) 91, 301
HindII GTYRAC 2 cut(s) 91, 301
HinfI GANTC 1 cut(s) 819
HpaII CCGG 4 cut(s) 304, 588, 876, 914
HphI GGTGA 2 cut(s) 839, 863
Hpy166II GTNNAC 6 cut(s) 91, 154, 187, 301, 425, 934
Hpy188I TCNGA 3 cut(s) 23, 160, 612
Hpy188III TCNNGA 4 cut(s) 208, 335, 643, 766
Hpy8I GTNNAC 6 cut(s) 91, 154, 187, 301, 425, 934
Hpy99I CGWCG 4 cut(s) 122, 164, 230, 458
HpyCH4III ACNGT 3 cut(s) 422, 851, 872
HpyCH4IV ACGT 5 cut(s) 120, 162, 572, 836, 855
HpyCH4V TGCA 2 cut(s) 96, 950
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 107, 904
HpyF3I CTNAG 1 cut(s) 672
HpySE526I ACGT 5 cut(s) 120, 162, 572, 836, 855
Hsp92I GRCGYC 4 cut(s) 51, 125, 343, 456
Hsp92II CATG 5 cut(s) 756, 769, 808, 826, 835
HspAI GCGC 2 cut(s) 416, 756
KpnI GGTACC 1 cut(s) 888
KspI CCGCGG 1 cut(s) 891
Kzo9I GATC 3 cut(s) 253, 762, 878
LmnI GCTCC 4 cut(s) 79, 176, 692, 700
Lsp1109I GCAGC 2 cut(s) 680, 910
MaeI CTAG 4 cut(s) 203, 759, 812, 842
MaeII ACGT 5 cut(s) 120, 162, 572, 836, 855
MaeIII GTNAC 4 cut(s) 269, 827, 837, 851
MalI GATC 3 cut(s) 255, 764, 880
MboI GATC 3 cut(s) 253, 762, 878
MboII GAAGA 4 cut(s) 249, 323, 580, 760
MhlI GDGCHC 3 cut(s) 173, 617, 697
MluCI AATT 2 cut(s) 493, 861
MlyI GAGTC 1 cut(s) 828
MmeI TCCRAC 3 cut(s) 54, 153, 183
MseI TTAA 3 cut(s) 84, 714, 860
MspA1I CMGCKG 4 cut(s) 195, 626, 671, 890
MspI CCGG 4 cut(s) 304, 588, 876, 914
MspR9I CCNGG 2 cut(s) 588, 914
MvnI CGCG 2 cut(s) 416, 890
MwoI GCNNNNNNNGC 3 cut(s) 57, 107, 904
NciI CCSGG 2 cut(s) 588, 914
NdeII GATC 3 cut(s) 253, 762, 878
NlaIII CATG 5 cut(s) 756, 769, 808, 826, 835
NlaIV GGNNCC 3 cut(s) 874, 886, 911
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 3 cut(s) 269, 827, 851
NspI RCATGY 2 cut(s) 756, 808
PagI TCATGA 1 cut(s) 765
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PkrI GCNGC 4 cut(s) 59, 369, 670, 900
PleI GAGTC 1 cut(s) 827
PpsI GAGTC 1 cut(s) 827
Psp124BI GAGCTC 1 cut(s) 697
PspFI CCCAGC 1 cut(s) 191
PspN4I GGNNCC 3 cut(s) 874, 886, 911
PspPI GGNCC 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 7 cut(s) 116, 155, 314, 542, 575, 886, 918
RsaNI GTAC 7 cut(s) 115, 154, 313, 541, 574, 885, 917
SacI GAGCTC 1 cut(s) 697
SacII CCGCGG 1 cut(s) 891
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 3 cut(s) 84, 714, 860
SatI GCNGC 4 cut(s) 58, 368, 669, 899
Sau3AI GATC 3 cut(s) 253, 762, 878
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 1 cut(s) 828
ScrFI CCNGG 2 cut(s) 588, 914
SduI GDGCHC 3 cut(s) 173, 617, 697
Sfr303I CCGCGG 1 cut(s) 891
SgrBI CCGCGG 1 cut(s) 891
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
Sse9I AATT 2 cut(s) 493, 861
SspMI CTAG 4 cut(s) 203, 759, 812, 842
SstI GAGCTC 1 cut(s) 697
StyD4I CCNGG 2 cut(s) 586, 912
TaaI ACNGT 3 cut(s) 422, 851, 872
TaiI ACGT 5 cut(s) 123, 165, 575, 839, 858
TaqI TCGA 2 cut(s) 6, 90
TasI AATT 2 cut(s) 493, 861
TatI WGTACW 1 cut(s) 153
TauI GCSGC 2 cut(s) 60, 370
Tru1I TTAA 3 cut(s) 84, 714, 860
Tru9I TTAA 3 cut(s) 84, 714, 860
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 3 cut(s) 269, 827, 851
TseI GCWGC 2 cut(s) 668, 898
Tsp45I GTSAC 3 cut(s) 269, 827, 851
TspDTI ATGAA 1 cut(s) 425
TspGWI ACGGA 4 cut(s) 92, 128, 243, 246
TspRI CASTG 1 cut(s) 622
XceI RCATGY 2 cut(s) 756, 808
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 4 cut(s) 203, 759, 812, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.