Rroxscaffold_7G00165920

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000556
Physical Location & Seq
Reverse (-)
7548644 .. 7549618
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00165920.1

Sequence Viewer

Length: 975 bp
ATGCAGCCAACACTAGTCCTTGCTTTCCTTTTCTCATCACATTTCCTTCTGAGCGAAGCAGCCGGTGGCCAATGGCAACTGCTGCAAGAGAGCATTGGCATTTCGGCAATGCACATGCAACTACTCCACACTGACCCCGTCGTCATTTTAGACTGCACCGACTTCGGCTTATCCAACCTCTCACTCCCCGATGGGAAATGTAGCTTCGACCCCGACGACACTGCGCTCATAATCGACTGCAGCGCACATTCAGCTGAATACGACGTTGCCAACAATTCCATTCGACCTCTTATGGTGCAAACTGATGTCTGGTGCTCCTCTGACTCGGCAATGCCGGACGGTCGTCTAGTTCAGACTGGTGGTTATAATGACGGAGAACGTAGGGTAAGGTTTTTCAAGTCTTGTCCGAATTGTGATTGGCATGAGATTGAGTACGGTTTAACCGCTCCGCGATGGTACTCAACCAATCACATTCTGCTAGATAGCCGAGAGATCATTATCGGCGACCGGGGACAGTTCAACTACGAGTTCTATCCCAAAACTGAATCTACTCAGAACGTGTACAATTTTCCATTCCTTCTCGAGACCTATGACCCTTACGTGGAAAACAATCTATATCCATTTGCTTTCCTCAACGTCGATGGAAACCTATTCATTTATCCAATAATCGAGCTATATTGCTCCATTATGTTACCAACAACATTGTTAAAACGTACCCTCAGATATCTGGTGGCAATCCGGCCGAGGTCTTATCCGAGCACCGGTTTAGCGGTTTTGCTGCTATTGAAGAACTTGCAGGCTCAACTTGTTGAAGCTGCGGTTTTGATATGTGGTGGAGCTCTTAAATGGTCTTATATCCAAGCAATGAATGGGACTTTTGTAGGAGCTTTAAGAACTTGTGCCCGGAATCGAAATAACCGACCCGAAATTAGAATGGGTTGTGGAGACTATGCCACTGGCTGGAGTCATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

324

Amino Acids

36.56

Weight (kDa)

5.08

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 37 - 306 4.9e-91 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AasI GACNNNNNNGTC 1 cut(s) 140
AccB7I CCANNNNNTGG 1 cut(s) 960
AccBSI CCGCTC 1 cut(s) 446
AccII CGCG 1 cut(s) 451
AciI CCGC 4 cut(s) 444, 449, 770, 818
AcoI YGGCCR 2 cut(s) 67, 740
AfaI GTAC 4 cut(s) 434, 458, 563, 715
AfiI CCNNNNNNNGG 3 cut(s) 601, 761, 960
AflIII ACRYGT 1 cut(s) 558
AgeI ACCGGT 1 cut(s) 761
AgsI TTSAA 4 cut(s) 397, 520, 787, 812
AhlI ACTAGT 1 cut(s) 13
AluBI AGCT 6 cut(s) 204, 254, 673, 815, 839, 887
AluI AGCT 6 cut(s) 204, 254, 673, 815, 839, 887
Alw21I GWGCWC 3 cut(s) 317, 761, 841
Alw26I GTCTC 2 cut(s) 578, 939
Ama87I CYCGRG 1 cut(s) 581
AoxI GGCC 2 cut(s) 67, 740
ApeKI GCWGC 6 cut(s) 4, 59, 82, 240, 778, 815
AsiGI ACCGGT 1 cut(s) 761
AspLEI GCGC 2 cut(s) 226, 245
AsuC2I CCSGG 2 cut(s) 509, 904
AvaI CYCGRG 1 cut(s) 581
BaeGI GKGCMC 1 cut(s) 904
BalI TGGCCA 1 cut(s) 69
BanII GRGCYC 1 cut(s) 841
Bbv12I GWGCWC 3 cut(s) 317, 761, 841
BbvI GCAGC 6 cut(s) 16, 69, 71, 252, 765, 802
BccI CCATC 3 cut(s) 185, 447, 635
BcgI CGANNNNNNTGC 4 cut(s) 145, 179, 203, 237
BcnI CCSGG 2 cut(s) 509, 904
BcoDI GTCTC 2 cut(s) 578, 939
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 3 cut(s) 14, 347, 479
BfmI CTRYAG 1 cut(s) 238
BisI GCNGC 6 cut(s) 5, 60, 83, 241, 779, 816
BlsI GCNGC 6 cut(s) 6, 61, 84, 242, 780, 817
Bme1390I CCNGG 2 cut(s) 509, 904
BmeT110I CYCGRG 1 cut(s) 581
BmrFI CCNGG 2 cut(s) 509, 904
BoxI GACNNNNGTC 1 cut(s) 342
BpuMI CCSGG 2 cut(s) 509, 904
BsaAI YACGTR 1 cut(s) 601
BsaBI GATNNNNATC 1 cut(s) 497
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 2 cut(s) 508, 743
BsaWI WCCGGW 1 cut(s) 761
Bsc4I CCNNNNNNNGG 3 cut(s) 601, 761, 960
Bse118I RCCGGY 2 cut(s) 62, 761
Bse1I ACTGG 2 cut(s) 361, 961
Bse3DI GCAATG 3 cut(s) 114, 336, 870
Bse8I GATNNNNATC 1 cut(s) 497
BseDI CCNNGG 2 cut(s) 508, 743
BseJI GATNNNNATC 1 cut(s) 497
BseLI CCNNNNNNNGG 3 cut(s) 601, 761, 960
BseMI GCAATG 3 cut(s) 114, 336, 870
BseMII CTCAG 3 cut(s) 41, 566, 733
BseNI ACTGG 2 cut(s) 361, 961
BseRI GAGGAG 1 cut(s) 307
BseSI GKGCMC 1 cut(s) 904
BseX3I CGGCCG 1 cut(s) 740
BseXI GCAGC 6 cut(s) 16, 69, 71, 252, 765, 802
BsgI GTGCAG 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 451
Bsh1285I CGRYCG 3 cut(s) 343, 508, 743
BshFI GGCC 2 cut(s) 69, 742
BshTI ACCGGT 1 cut(s) 761
BsiEI CGRYCG 3 cut(s) 343, 508, 743
BsiHKAI GWGCWC 3 cut(s) 317, 761, 841
BsiHKCI CYCGRG 1 cut(s) 581
BsiSI CCGG 6 cut(s) 63, 335, 508, 739, 762, 904
BslFI GGGAC 2 cut(s) 525, 886
BslI CCNNNNNNNGG 3 cut(s) 601, 761, 960
BsmAI GTCTC 2 cut(s) 578, 939
BsmFI GGGAC 2 cut(s) 525, 886
BsnI GGCC 2 cut(s) 69, 742
Bso31I GGTCTC 1 cut(s) 578
BsoBI CYCGRG 1 cut(s) 581
Bsp1286I GDGCHC 4 cut(s) 317, 761, 841, 904
Bsp1407I TGTACA 1 cut(s) 561
Bsp143I GATC 1 cut(s) 492
BspACI CCGC 4 cut(s) 444, 449, 770, 818
BspANI GGCC 2 cut(s) 69, 742
BspCNI CTCAG 3 cut(s) 42, 565, 732
BspFNI CGCG 1 cut(s) 451
BspHI TCATGA 1 cut(s) 967
BspMAI CTGCAG 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 578
BsrBI CCGCTC 1 cut(s) 446
BsrDI GCAATG 3 cut(s) 114, 336, 870
BsrFI RCCGGY 2 cut(s) 62, 761
BsrGI TGTACA 1 cut(s) 561
BsrI ACTGG 2 cut(s) 361, 961
BssAI RCCGGY 2 cut(s) 62, 761
BssECI CCNNGG 2 cut(s) 508, 743
BssMI GATC 1 cut(s) 492
Bst4CI ACNGT 3 cut(s) 341, 437, 516
BstAPI GCANNNNNTGC 1 cut(s) 82
BstAUI TGTACA 1 cut(s) 561
BstBAI YACGTR 1 cut(s) 601
BstC8I GCNNGC 1 cut(s) 798
BstDEI CTNAG 3 cut(s) 50, 552, 719
BstFNI CGCG 1 cut(s) 451
BstHHI GCGC 2 cut(s) 226, 245
BstKTI GATC 1 cut(s) 495
BstMAI GTCTC 2 cut(s) 578, 939
BstMBI GATC 1 cut(s) 492
BstMCI CGRYCG 3 cut(s) 343, 508, 743
BstMWI GCNNNNNNNGC 2 cut(s) 82, 251
BstNSI RCATGY 1 cut(s) 118
BstPAI GACNNNNGTC 1 cut(s) 342
BstSCI CCNGG 2 cut(s) 507, 902
BstSFI CTRYAG 1 cut(s) 238
BstSLI GKGCMC 1 cut(s) 904
BstUI CGCG 1 cut(s) 451
BstV1I GCAGC 6 cut(s) 16, 69, 71, 252, 765, 802
BstZI CGGCCG 1 cut(s) 740
BsuRI GGCC 2 cut(s) 69, 742
BtgZI GCGATG 1 cut(s) 466
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 3 cut(s) 129, 219, 954
Cac8I GCNNGC 1 cut(s) 798
CciI TCATGA 1 cut(s) 967
CfoI GCGC 2 cut(s) 226, 245
Cfr10I RCCGGY 2 cut(s) 62, 761
Csp6I GTAC 4 cut(s) 433, 457, 562, 714
CspAI ACCGGT 1 cut(s) 761
CviAII CATG 3 cut(s) 115, 422, 968
CviQI GTAC 4 cut(s) 433, 457, 562, 714
DdeI CTNAG 3 cut(s) 50, 552, 719
DpnI GATC 1 cut(s) 494
DpnII GATC 1 cut(s) 492
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 2 cut(s) 67, 740
EagI CGGCCG 1 cut(s) 740
Ecl136II GAGCTC 1 cut(s) 839
EclXI CGGCCG 1 cut(s) 740
Eco24I GRGCYC 1 cut(s) 841
Eco31I GGTCTC 1 cut(s) 578
Eco32I GATATC 1 cut(s) 725
Eco52I CGGCCG 1 cut(s) 740
Eco53kI GAGCTC 1 cut(s) 839
Eco88I CYCGRG 1 cut(s) 581
EcoICRI GAGCTC 1 cut(s) 839
EcoRV GATATC 1 cut(s) 725
EcoT38I GRGCYC 1 cut(s) 841
FaeI CATG 3 cut(s) 118, 425, 971
FaqI GGGAC 2 cut(s) 525, 886
FatI CATG 3 cut(s) 114, 421, 967
Fnu4HI GCNGC 6 cut(s) 5, 60, 83, 241, 779, 816
FriOI GRGCYC 1 cut(s) 841
Fsp4HI GCNGC 6 cut(s) 5, 60, 83, 241, 779, 816
FspBI CTAG 3 cut(s) 14, 347, 479
GlaI GCGC 2 cut(s) 225, 244
GluI GCNGC 6 cut(s) 5, 60, 83, 241, 779, 816
HaeIII GGCC 2 cut(s) 69, 742
HapII CCGG 6 cut(s) 63, 335, 508, 739, 762, 904
HhaI GCGC 2 cut(s) 226, 245
Hin1II CATG 3 cut(s) 118, 425, 971
Hin6I GCGC 2 cut(s) 224, 243
HinP1I GCGC 2 cut(s) 224, 243
HinfI GANTC 4 cut(s) 323, 545, 907, 964
HpaII CCGG 6 cut(s) 63, 335, 508, 739, 762, 904
Hpy166II GTNNAC 1 cut(s) 562
Hpy188I TCNGA 7 cut(s) 51, 322, 354, 408, 555, 722, 756
Hpy188III TCNNGA 3 cut(s) 581, 583, 968
Hpy8I GTNNAC 1 cut(s) 562
Hpy99I CGWCG 4 cut(s) 143, 218, 266, 641
HpyAV CCTTC 2 cut(s) 56, 587
HpyCH4III ACNGT 3 cut(s) 341, 437, 516
HpyCH4IV ACGT 6 cut(s) 264, 379, 558, 600, 636, 712
HpyCH4V TGCA 8 cut(s) 4, 85, 112, 118, 156, 240, 298, 796
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 251
HpyF3I CTNAG 3 cut(s) 50, 552, 719
HpySE526I ACGT 6 cut(s) 264, 379, 558, 600, 636, 712
Hsp92II CATG 3 cut(s) 118, 425, 971
HspAI GCGC 2 cut(s) 224, 243
Kzo9I GATC 1 cut(s) 492
LmnI GCTCC 5 cut(s) 320, 451, 686, 836, 884
Lsp1109I GCAGC 6 cut(s) 16, 69, 71, 252, 765, 802
MaeI CTAG 3 cut(s) 14, 347, 479
MaeII ACGT 6 cut(s) 264, 379, 558, 600, 636, 712
MaeIII GTNAC 1 cut(s) 690
MalI GATC 1 cut(s) 494
MbiI CCGCTC 1 cut(s) 446
MboI GATC 1 cut(s) 492
MboII GAAGA 1 cut(s) 799
MhlI GDGCHC 4 cut(s) 317, 761, 841, 904
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 4 cut(s) 274, 409, 565, 927
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 2 cut(s) 317, 973
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 6 cut(s) 188, 297, 328, 641, 728, 738
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
MseI TTAA 4 cut(s) 440, 707, 843, 890
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 6 cut(s) 63, 335, 508, 739, 762, 904
MspR9I CCNGG 2 cut(s) 509, 904
MvnI CGCG 1 cut(s) 451
MwoI GCNNNNNNNGC 2 cut(s) 82, 251
NciI CCSGG 2 cut(s) 509, 904
NdeII GATC 1 cut(s) 492
NlaIII CATG 3 cut(s) 118, 425, 971
NmeAIII GCCGAG 3 cut(s) 305, 512, 768
NspI RCATGY 1 cut(s) 118
PaeR7I CTCGAG 1 cut(s) 581
PagI TCATGA 1 cut(s) 967
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 916
PfeI GAWTC 2 cut(s) 545, 907
PflFI GACNNNGTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 960
PinAI ACCGGT 1 cut(s) 761
PkrI GCNGC 6 cut(s) 6, 61, 84, 242, 780, 817
PleI GAGTC 2 cut(s) 317, 972
PpsI GAGTC 2 cut(s) 317, 972
Ppu21I YACGTR 1 cut(s) 601
PshAI GACNNNNGTC 1 cut(s) 342
PsiI TTATAA 1 cut(s) 366
Psp124BI GAGCTC 1 cut(s) 841
PstI CTGCAG 1 cut(s) 242
PsyI GACNNNGTC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 4 cut(s) 434, 458, 563, 715
RsaNI GTAC 4 cut(s) 433, 457, 562, 714
SacI GAGCTC 1 cut(s) 841
SaqAI TTAA 4 cut(s) 440, 707, 843, 890
SatI GCNGC 6 cut(s) 5, 60, 83, 241, 779, 816
Sau3AI GATC 1 cut(s) 492
SchI GAGTC 2 cut(s) 317, 973
ScrFI CCNGG 2 cut(s) 509, 904
SduI GDGCHC 4 cut(s) 317, 761, 841, 904
SfcI CTRYAG 1 cut(s) 238
Sfr274I CTCGAG 1 cut(s) 581
SlaI CTCGAG 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
SpeI ACTAGT 1 cut(s) 13
Sse9I AATT 4 cut(s) 274, 409, 565, 927
SsiI CCGC 4 cut(s) 444, 449, 770, 818
SspMI CTAG 3 cut(s) 14, 347, 479
SstI GAGCTC 1 cut(s) 841
StyD4I CCNGG 2 cut(s) 507, 902
TaaI ACNGT 3 cut(s) 341, 437, 516
TaiI ACGT 6 cut(s) 267, 382, 561, 603, 639, 715
TaqI TCGA 7 cut(s) 207, 234, 283, 582, 639, 669, 910
TasI AATT 4 cut(s) 274, 409, 565, 927
TatI WGTACW 1 cut(s) 561
TfiI GAWTC 2 cut(s) 545, 907
Tru1I TTAA 4 cut(s) 440, 707, 843, 890
Tru9I TTAA 4 cut(s) 440, 707, 843, 890
TscAI CASTG 3 cut(s) 136, 226, 961
TseI GCWGC 6 cut(s) 4, 59, 82, 240, 778, 815
TspDTI ATGAA 2 cut(s) 643, 881
TspGWI ACGGA 1 cut(s) 387
TspRI CASTG 3 cut(s) 136, 226, 961
Tth111I GACNNNGTC 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 960
XceI RCATGY 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 866
XhoI CTCGAG 1 cut(s) 581
XspI CTAG 3 cut(s) 14, 347, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.