RchiOBHm_Chr6g0302271

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000556
Physical Location & Seq
Forward (+)
62429990 .. 62430568
579 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27153

Sequence Viewer

Length: 579 bp
ATGTTCTATCATCAGTATCATGTATTCATGTTCTACAGGGGATGTATTTTGGTTCATCAATGGTCTTTTGGTGTTTGGTTAATTTTTTTGGCCCCCATACATATATATTCCTCCCTCTGCCACTGTTGTGAAGTATTGTTCGTAGCTCTCTCCCTGGATTTAAAGAGCTGGATATGCTCAGCTTTAGAGACCAATCCACAGACCACACAAAACAAGCAACTAATAATGCAACCAACACTAGTCCTTGCTTTCCTTTTCTCATCACATTTCCTTCTGAGCGAAGCAGCCGGTGGCCAATGGCAACTGCTGCAAGAGAGCATTGGCATTTCGGCAATGCACATGCAACTACTCCACACTGACCACGTCGTCATTTTCGACCGCACCAACTTCGGCGTATCCAAACTCTCACTCCCCGATGGGAAATGTCGCTTCGACCCCGACGACACTGCGCTCATAATTGACTGCAGCACACATTCAGCTGAATACGACGTTGCTAACAATTCCATTCGACCTCTTATGGTGCAAACTGATGTCTGGTGCTCCTCTGAGTCGGCAATGCTGGACAGTCGTCTAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

192

Amino Acids

21.85

Weight (kDa)

5.56

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 112 - 192 1e-27 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 365
AciI CCGC 1 cut(s) 379
AcoI YGGCCR 1 cut(s) 292
AhlI ACTAGT 1 cut(s) 238
AjiI CACGTC 1 cut(s) 364
AjnI CCWGG 1 cut(s) 153
AleI CACNNNNGTG 1 cut(s) 126
AluBI AGCT 4 cut(s) 146, 168, 182, 479
AluI AGCT 4 cut(s) 146, 168, 182, 479
Alw21I GWGCWC 1 cut(s) 542
Alw26I GTCTC 1 cut(s) 182
AoxI GGCC 2 cut(s) 90, 292
ApeKI GCWGC 3 cut(s) 284, 307, 465
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 91
BalI TGGCCA 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 542
BbvI GCAGC 3 cut(s) 294, 296, 477
BccI CCATC 1 cut(s) 410
BcgI CGANNNNNNTGC 4 cut(s) 370, 404, 428, 462
BciT130I CCWGG 1 cut(s) 155
BciVI GTATCC 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 182
BcuI ACTAGT 1 cut(s) 238
BfaI CTAG 3 cut(s) 239, 572, 577
BfmI CTRYAG 2 cut(s) 34, 463
BfuI GTATCC 1 cut(s) 406
BisI GCNGC 3 cut(s) 285, 308, 466
BlpI GCTNAGC 1 cut(s) 178
BlsI GCNGC 3 cut(s) 286, 309, 467
Bme1390I CCNGG 1 cut(s) 155
BmgBI CACGTC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 155
BoxI GACNNNNGTC 1 cut(s) 567
Bpu1102I GCTNAGC 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bse118I RCCGGY 1 cut(s) 287
Bse3DI GCAATG 2 cut(s) 339, 561
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 47
BseMI GCAATG 2 cut(s) 339, 561
BseMII CTCAG 3 cut(s) 192, 266, 537
BseRI GAGGAG 1 cut(s) 532
BseXI GCAGC 3 cut(s) 294, 296, 477
Bsh1285I CGRYCG 1 cut(s) 379
BshFI GGCC 2 cut(s) 92, 294
BsiEI CGRYCG 1 cut(s) 379
BsiHKAI GWGCWC 1 cut(s) 542
BsiSI CCGG 1 cut(s) 288
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 2 cut(s) 92, 294
Bso31I GGTCTC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 542
Bsp1720I GCTNAGC 1 cut(s) 178
BspACI CCGC 1 cut(s) 379
BspANI GGCC 2 cut(s) 92, 294
BspCNI CTCAG 3 cut(s) 191, 267, 538
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 1 cut(s) 467
BspTNI GGTCTC 1 cut(s) 182
BsrDI GCAATG 2 cut(s) 339, 561
BsrFI RCCGGY 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 125, 566
BstAPI GCANNNNNTGC 1 cut(s) 307
BstDEI CTNAG 3 cut(s) 178, 275, 546
BstF5I GGATG 1 cut(s) 47
BstHHI GCGC 1 cut(s) 451
BstMAI GTCTC 1 cut(s) 182
BstMCI CGRYCG 1 cut(s) 379
BstMWI GCNNNNNNNGC 2 cut(s) 174, 307
BstNI CCWGG 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 343
BstPAI GACNNNNGTC 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 153
BstSFI CTRYAG 2 cut(s) 34, 463
BstV1I GCAGC 3 cut(s) 294, 296, 477
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 2 cut(s) 92, 294
BtrI CACGTC 1 cut(s) 364
BtsCI GGATG 1 cut(s) 47
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 3 cut(s) 121, 354, 444
CfoI GCGC 1 cut(s) 451
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 91
CviAII CATG 3 cut(s) 20, 28, 340
CviJI RGCY 7 cut(s) 92, 146, 168, 182, 287, 294, 479
CviKI_1 RGCY 7 cut(s) 92, 146, 168, 182, 287, 294, 479
DdeI CTNAG 3 cut(s) 178, 275, 546
DraI TTTAAA 1 cut(s) 162
DrdI GACNNNNNNGTC 1 cut(s) 365
DseDI GACNNNNNNGTC 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 292
Eco31I GGTCTC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 153
FaeI CATG 3 cut(s) 23, 31, 343
FatI CATG 3 cut(s) 19, 27, 339
Fnu4HI GCNGC 3 cut(s) 285, 308, 466
FokI GGATG 1 cut(s) 54
Fsp4HI GCNGC 3 cut(s) 285, 308, 466
FspBI CTAG 3 cut(s) 239, 572, 577
GlaI GCGC 1 cut(s) 450
GluI GCNGC 3 cut(s) 285, 308, 466
HaeIII GGCC 2 cut(s) 92, 294
HapII CCGG 1 cut(s) 288
HhaI GCGC 1 cut(s) 451
Hin1II CATG 3 cut(s) 23, 31, 343
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HinfI GANTC 1 cut(s) 548
HpaII CCGG 1 cut(s) 288
Hpy188I TCNGA 2 cut(s) 276, 547
Hpy99I CGWCG 3 cut(s) 368, 443, 491
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 2 cut(s) 125, 566
HpyCH4IV ACGT 2 cut(s) 363, 489
HpyCH4V TGCA 6 cut(s) 229, 310, 337, 343, 465, 523
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 307
HpyF3I CTNAG 3 cut(s) 178, 275, 546
HpySE526I ACGT 2 cut(s) 363, 489
Hsp92II CATG 3 cut(s) 23, 31, 343
HspAI GCGC 1 cut(s) 449
LmnI GCTCC 1 cut(s) 545
LpnPI CCDG 7 cut(s) 22, 140, 154, 167, 301, 520, 545
Lsp1109I GCAGC 3 cut(s) 294, 296, 477
MaeI CTAG 3 cut(s) 239, 572, 577
MaeII ACGT 2 cut(s) 363, 489
MhlI GDGCHC 1 cut(s) 542
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 3 cut(s) 81, 456, 499
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 1 cut(s) 557
MnlI CCTC 4 cut(s) 121, 125, 522, 553
Mox20I TGGCCA 1 cut(s) 294
MscI TGGCCA 1 cut(s) 294
MseI TTAA 2 cut(s) 80, 161
MslI CAYNNNNRTG 1 cut(s) 126
Msp20I TGGCCA 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 174, 307
NlaIII CATG 3 cut(s) 23, 31, 343
NlaIV GGNNCC 1 cut(s) 93
NspI RCATGY 1 cut(s) 343
OliI CACNNNNGTG 1 cut(s) 126
PcsI WCGNNNNNNNCGW 2 cut(s) 372, 438
PflFI GACNNNGTC 1 cut(s) 362
PkrI GCNGC 3 cut(s) 286, 309, 467
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PshAI GACNNNNGTC 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 91
PstI CTGCAG 1 cut(s) 467
PsyI GACNNNGTC 1 cut(s) 362
PvuII CAGCTG 1 cut(s) 479
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 2 cut(s) 80, 161
SatI GCNGC 3 cut(s) 285, 308, 466
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 1 cut(s) 542
SetI ASST 7 cut(s) 148, 170, 184, 366, 481, 492, 514
SfcI CTRYAG 2 cut(s) 34, 463
SmiMI CAYNNNNRTG 1 cut(s) 126
SpeI ACTAGT 1 cut(s) 238
Sse9I AATT 3 cut(s) 81, 456, 499
SsiI CCGC 1 cut(s) 379
SspMI CTAG 3 cut(s) 239, 572, 577
StyD4I CCNGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 125, 566
TaiI ACGT 2 cut(s) 366, 492
TaqI TCGA 3 cut(s) 375, 432, 508
TasI AATT 3 cut(s) 81, 456, 499
Tru1I TTAA 2 cut(s) 80, 161
Tru9I TTAA 2 cut(s) 80, 161
TscAI CASTG 3 cut(s) 128, 361, 451
TseI GCWGC 3 cut(s) 284, 307, 465
TspDTI ATGAA 2 cut(s) 16, 44
TspRI CASTG 3 cut(s) 128, 361, 451
Tth111I GACNNNGTC 1 cut(s) 362
XceI RCATGY 1 cut(s) 343
XspI CTAG 3 cut(s) 239, 572, 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.