Rorug06G0313600

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000556
Physical Location & Seq
Forward (+)
46477444 .. 46477893
450 bp
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UTR
Exon/CDS
Intron
Rorug06G0313600.1

Sequence Viewer

Length: 450 bp
ATGGCCATGTATATCGGGTTTGATGATTTTAGACCAGTGAGACCAGAAGAAGAAGAAGCAAAGGTCGATACTCATGATCCAAAAAAAGAAGCGAAGCGTTCTCGAATCTGTAAAGCGGATGTGTTCTGGAAGGGCGACGAGTACAAGACTTGTAATATTTGTTCTGAGGAGCACTTAATGGGTTCTGTCTGCCCTTACCGGGACTGTGTCCCGCCGGGCGCAACTGTCGGCCCTCAATATCATGTAATTTGTCGGGGATGTGGTCGTATGATTCTCGATTGGTCTGAGACTTGGGTTTGCAATTACTGTTTTTCAGAACAAGCAAGGGTTTCTGAAAAGTCATGTAACATTTGCGACACCTTTTATATGCACAATAGCACAGATCGCCCAGTCGACAAGGATAGAGCTGCCAGGTTCAAAAAGCTTCTCATAGCTTGTCGAGCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

149

Amino Acids

17.24

Weight (kDa)

6.86

Isoelectric Point (pI)

58.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 393
AciI CCGC 2 cut(s) 116, 212
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 1 cut(s) 418
AjnI CCWGG 1 cut(s) 410
AluBI AGCT 4 cut(s) 407, 424, 434, 443
AluI AGCT 4 cut(s) 407, 424, 434, 443
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 34, 281
AlwI GGATC 1 cut(s) 71
AoxI GGCC 2 cut(s) 3, 229
ApeKI GCWGC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 230
AsuC2I CCSGG 2 cut(s) 200, 216
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 394
BciT130I CCWGG 1 cut(s) 412
BcnI CCSGG 2 cut(s) 200, 216
BcoDI GTCTC 2 cut(s) 34, 281
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme1390I CCNGG 3 cut(s) 200, 216, 412
BmgT120I GGNCC 1 cut(s) 230
BmrFI CCNGG 3 cut(s) 200, 216, 412
BmrI ACTGGG 1 cut(s) 383
BmuI ACTGGG 1 cut(s) 383
BpuMI CCSGG 2 cut(s) 200, 216
BsaI GGTCTC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 35, 389
BseBI CCWGG 1 cut(s) 412
BseGI GGATG 2 cut(s) 124, 263
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 2 cut(s) 156, 276
BseNI ACTGG 2 cut(s) 35, 389
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 394
BshFI GGCC 2 cut(s) 5, 231
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 2 cut(s) 199, 215
BslFI GGGAC 2 cut(s) 194, 215
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 2 cut(s) 34, 281
BsmFI GGGAC 2 cut(s) 194, 215
BsnI GGCC 2 cut(s) 5, 231
Bso31I GGTCTC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 2 cut(s) 76, 382
BspACI CCGC 2 cut(s) 116, 212
BspANI GGCC 2 cut(s) 5, 231
BspCNI CTCAG 2 cut(s) 157, 277
BspHI TCATGA 1 cut(s) 73
BspPI GGATC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 34
BsrI ACTGG 2 cut(s) 35, 389
BssMI GATC 2 cut(s) 76, 382
Bst2UI CCWGG 1 cut(s) 412
Bst4CI ACNGT 3 cut(s) 206, 226, 308
BstDEI CTNAG 2 cut(s) 165, 285
BstF5I GGATG 2 cut(s) 124, 263
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 2 cut(s) 79, 385
BstMAI GTCTC 2 cut(s) 34, 281
BstMBI GATC 2 cut(s) 76, 382
BstMWI GCNNNNNNNGC 2 cut(s) 384, 440
BstNI CCWGG 1 cut(s) 412
BstSCI CCNGG 3 cut(s) 198, 214, 410
BstV1I GCAGC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 5, 231
BtsCI GGATG 2 cut(s) 124, 263
BtsIMutI CAGTG 1 cut(s) 42
CciI TCATGA 1 cut(s) 73
CfoI GCGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 142
CviAII CATG 4 cut(s) 7, 74, 242, 342
CviJI RGCY 6 cut(s) 5, 231, 407, 424, 434, 443
CviKI_1 RGCY 6 cut(s) 5, 231, 407, 424, 434, 443
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 2 cut(s) 165, 285
DpnI GATC 2 cut(s) 78, 384
DpnII GATC 2 cut(s) 76, 382
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 410
FaeI CATG 4 cut(s) 10, 77, 245, 345
FaqI GGGAC 2 cut(s) 194, 215
FatI CATG 4 cut(s) 6, 73, 241, 341
FauI CCCGC 1 cut(s) 219
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 2 cut(s) 131, 270
Fsp4HI GCNGC 1 cut(s) 408
GlaI GCGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 408
HaeIII GGCC 2 cut(s) 5, 231
HapII CCGG 2 cut(s) 199, 215
HhaI GCGC 1 cut(s) 221
Hin1II CATG 4 cut(s) 10, 77, 245, 345
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 2 cut(s) 105, 271
HpaII CCGG 2 cut(s) 199, 215
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 4 cut(s) 166, 286, 316, 334
Hpy188III TCNNGA 4 cut(s) 74, 102, 127, 275
Hpy8I GTNNAC 1 cut(s) 394
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 3 cut(s) 206, 226, 308
HpyCH4V TGCA 2 cut(s) 300, 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 384, 440
HpyF3I CTNAG 2 cut(s) 165, 285
Hsp92II CATG 4 cut(s) 10, 77, 245, 345
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 2 cut(s) 76, 382
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 8 cut(s) 48, 57, 112, 212, 228, 397, 402, 424
Lsp1109I GCAGC 1 cut(s) 394
MaeIII GTNAC 1 cut(s) 344
MalI GATC 2 cut(s) 78, 384
MboI GATC 2 cut(s) 76, 382
MboII GAAGA 3 cut(s) 59, 62, 65
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 246, 301
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 160, 243
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 199, 215
MspR9I CCNGG 3 cut(s) 200, 216, 412
MvaI CCWGG 1 cut(s) 412
MwoI GCNNNNNNNGC 2 cut(s) 384, 440
NciI CCSGG 2 cut(s) 200, 216
NdeII GATC 2 cut(s) 76, 382
NlaIII CATG 4 cut(s) 10, 77, 245, 345
PagI TCATGA 1 cut(s) 73
PfeI GAWTC 2 cut(s) 105, 271
PflFI GACNNNGTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 410
PspGI CCWGG 1 cut(s) 410
PspPI GGNCC 1 cut(s) 230
PsrI GAACNNNNNNTAC 2 cut(s) 145, 177
PsyI GACNNNGTC 1 cut(s) 206
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 2 cut(s) 76, 382
Sau96I GGNCC 1 cut(s) 230
ScrFI CCNGG 3 cut(s) 200, 216, 412
SduI GDGCHC 1 cut(s) 174
SetI ASST 7 cut(s) 66, 362, 409, 416, 426, 436, 445
Sse9I AATT 2 cut(s) 246, 301
SsiI CCGC 2 cut(s) 116, 212
SspI AATATT 1 cut(s) 157
StyD4I CCNGG 3 cut(s) 198, 214, 410
TaaI ACNGT 3 cut(s) 206, 226, 308
TaqI TCGA 5 cut(s) 66, 103, 276, 393, 439
TasI AATT 2 cut(s) 246, 301
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 2 cut(s) 105, 271
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 42
TseI GCWGC 1 cut(s) 407
TspRI CASTG 1 cut(s) 42
Tth111I GACNNNGTC 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.