Rmu_sc0002778.1_g000005

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002778.1
OG0000556
Physical Location & Seq
Forward (+)
15362 .. 19525
4164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002778.1_g000005.1.cds

Sequence Viewer

Length: 1062 bp
atgaagacatgcccaactccacatctcattctctcattcctgttcatatgcacttttttcttctccctgacccacgccgccggcggtaaatggcagctgctagtgaaaagcgtcggcatttccgccatgcacatgcagctcctccacaacgaccgtgtcgtcatgttcgaccgcaccgacttcggaaaatccaacctccccctccccaacggcgtctgccgcaacaacccccacgatacggagcttaaagtcgactgcacggcccactccgccgagtacgacgtggcgtccaacaaagtccgtcctctgtttgtgtactccgacgtgtggtgctcctcggggtcagtaaaccccagcggaagtctagtccagacgggaggtttcaacgacggagacagaagagtgcgggtttttgatccgtgtcctacttgtgactggaaagagattgagttcgggttagtcaaccggagatggtacgccaccaatcatattcttccagatggacgccagataatcatcggcggacggcggcagttcaactacgaattctgtgagaacttccttcacgaaagttgtagagcgcgtcgatacgagttcgtggacatgcggaacgtgagaatcggatttcgccttctcaccttccccggccgatttcttcctcgtccggccaccttttgcttagattccaaagggaatcctgctctcctcagtcccctctacacatctgtggtggtgatttgtcgtgggaagcaccatagacgatgctacaaggccaagaagttgcacggtggagctgcaaatcgcctcaaatcgccggccttggttctcccagctccggccactatagctcgaattgggaatctagggttcatcggttttcaaaacttgcgaggtaaattctggccaaatggctttgattcagactttttgctagttatgaatgtttcaattggagttgagatgaagaactttcatgtagtgagttttgccacattccgactttgggccggtggcggtgccgccactgtggtggtgtttttcggcggtttccggccaccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

353

Amino Acids

39.67

Weight (kDa)

9.67

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 1016
AccI GTMKAC 1 cut(s) 252
AccII CGCG 1 cut(s) 583
AclWI GGATC 1 cut(s) 410
AcoI YGGCCR 5 cut(s) 646, 666, 837, 902, 1052
AcsI RAATTY 2 cut(s) 545, 896
AcyI GRCGYC 3 cut(s) 213, 287, 505
AfaI GTAC 3 cut(s) 278, 317, 476
AfiI CCNNNNNNNGG 4 cut(s) 238, 327, 835, 1003
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 4 cut(s) 385, 538, 881, 948
AhdI GACNNNNNGTC 1 cut(s) 286
AjiI CACGTC 2 cut(s) 283, 325
AleI CACNNNNGTG 2 cut(s) 725, 1028
AluBI AGCT 6 cut(s) 97, 139, 244, 794, 833, 848
AluI AGCT 6 cut(s) 97, 139, 244, 794, 833, 848
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 1 cut(s) 387
AlwI GGATC 1 cut(s) 410
Ama87I CYCGRG 1 cut(s) 337
AoxI GGCC 9 cut(s) 261, 646, 666, 771, 816, 837, 902, 1005, 1052
ApeKI GCWGC 4 cut(s) 94, 97, 136, 794
ApoI RAATTY 2 cut(s) 545, 896
AspLEI GCGC 1 cut(s) 583
AspS9I GGNCC 2 cut(s) 262, 1005
AsuC2I CCSGG 1 cut(s) 645
AsuHPI GGTGA 2 cut(s) 628, 745
AvaI CYCGRG 1 cut(s) 337
BalI TGGCCA 1 cut(s) 904
BanI GGYRCC 1 cut(s) 1016
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 4 cut(s) 84, 106, 148, 781
BccI CCATC 2 cut(s) 465, 494
BceAI ACGGC 3 cut(s) 226, 276, 542
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BcnI CCSGG 1 cut(s) 645
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 4 cut(s) 101, 365, 863, 932
BfmI CTRYAG 1 cut(s) 843
BisI GCNGC 8 cut(s) 78, 95, 98, 137, 220, 530, 795, 1020
BlsI GCNGC 8 cut(s) 79, 96, 99, 138, 221, 531, 796, 1021
Bme1390I CCNGG 1 cut(s) 645
BmeRI GACNNNNNGTC 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 337
BmgBI CACGTC 2 cut(s) 283, 325
BmgT120I GGNCC 2 cut(s) 262, 1005
BmiI GGNNCC 1 cut(s) 1018
BmrFI CCNGG 1 cut(s) 645
BmsI GCATC 1 cut(s) 752
BpiI GAAGAC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 645
BsaBI GATNNNNATC 1 cut(s) 515
BsaHI GRCGYC 3 cut(s) 213, 287, 505
BsaJI CCNNGG 3 cut(s) 336, 643, 819
BsaWI WCCGGW 1 cut(s) 465
Bsc4I CCNNNNNNNGG 4 cut(s) 238, 327, 835, 1003
Bse118I RCCGGY 3 cut(s) 80, 814, 1007
Bse1I ACTGG 1 cut(s) 440
Bse8I GATNNNNATC 1 cut(s) 515
BseDI CCNNGG 3 cut(s) 336, 643, 819
BseJI GATNNNNATC 1 cut(s) 515
BseLI CCNNNNNNNGG 4 cut(s) 238, 327, 835, 1003
BseMII CTCAG 1 cut(s) 721
BseNI ACTGG 1 cut(s) 440
BseRI GAGGAG 3 cut(s) 131, 325, 695
BseX3I CGGCCG 1 cut(s) 646
BseXI GCAGC 4 cut(s) 84, 106, 148, 781
BseYI CCCAGC 2 cut(s) 353, 829
BsgI GTGCAG 1 cut(s) 241
Bsh1236I CGCG 1 cut(s) 583
Bsh1285I CGRYCG 3 cut(s) 154, 172, 649
BshFI GGCC 9 cut(s) 263, 648, 668, 773, 818, 839, 904, 1007, 1054
BshNI GGYRCC 1 cut(s) 1016
BsiEI CGRYCG 3 cut(s) 154, 172, 649
BsiHKAI GWGCWC 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 337
BsiSI CCGG 8 cut(s) 81, 466, 645, 665, 815, 836, 1008, 1051
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 4 cut(s) 238, 327, 835, 1003
BsmAI GTCTC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 696
BsnI GGCC 9 cut(s) 263, 648, 668, 773, 818, 839, 904, 1007, 1054
BsoBI CYCGRG 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 1 cut(s) 415
BspANI GGCC 9 cut(s) 263, 648, 668, 773, 818, 839, 904, 1007, 1054
BspCNI CTCAG 1 cut(s) 720
BspFNI CGCG 1 cut(s) 583
BspLI GGNNCC 1 cut(s) 1018
BspPI GGATC 1 cut(s) 410
BspT107I GGYRCC 1 cut(s) 1016
BsrFI RCCGGY 3 cut(s) 80, 814, 1007
BsrI ACTGG 1 cut(s) 440
BssAI RCCGGY 3 cut(s) 80, 814, 1007
BssECI CCNNGG 3 cut(s) 336, 643, 819
BssMI GATC 1 cut(s) 415
BssNI GRCGYC 3 cut(s) 213, 287, 505
BssT1I CCWWGG 1 cut(s) 819
Bst4CI ACNGT 3 cut(s) 155, 788, 1027
Bst6I CTCTTC 1 cut(s) 394
BstACI GRCGYC 3 cut(s) 213, 287, 505
BstC8I GCNNGC 2 cut(s) 82, 816
BstDEI CTNAG 3 cut(s) 679, 707, 1059
BstFNI CGCG 1 cut(s) 583
BstHHI GCGC 1 cut(s) 583
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 1 cut(s) 415
BstMCI CGRYCG 3 cut(s) 154, 172, 649
BstMWI GCNNNNNNNGC 4 cut(s) 136, 219, 269, 845
BstNSI RCATGY 3 cut(s) 12, 136, 607
BstSCI CCNGG 1 cut(s) 643
BstSFI CTRYAG 1 cut(s) 843
BstUI CGCG 1 cut(s) 583
BstV1I GCAGC 4 cut(s) 84, 106, 148, 781
BstV2I GAAGAC 1 cut(s) 11
BstXI CCANNNNNNTGG 1 cut(s) 1030
BstZI CGGCCG 1 cut(s) 646
BsuRI GGCC 9 cut(s) 263, 648, 668, 773, 818, 839, 904, 1007, 1054
BtrI CACGTC 2 cut(s) 283, 325
BtsIMutI CAGTG 1 cut(s) 1023
Cac8I GCNNGC 2 cut(s) 82, 816
CfoI GCGC 1 cut(s) 583
Cfr10I RCCGGY 3 cut(s) 80, 814, 1007
Cfr13I GGNCC 2 cut(s) 262, 1005
CseI GACGC 5 cut(s) 100, 202, 276, 513, 572
Csp6I GTAC 3 cut(s) 277, 316, 475
CviAII CATG 6 cut(s) 9, 127, 133, 163, 604, 974
CviQI GTAC 3 cut(s) 277, 316, 475
DdeI CTNAG 3 cut(s) 679, 707, 1059
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
DrdI GACNNNNNNGTC 1 cut(s) 158
DriI GACNNNNNGTC 1 cut(s) 286
DseDI GACNNNNNNGTC 1 cut(s) 158
EaeI YGGCCR 5 cut(s) 646, 666, 837, 902, 1052
EagI CGGCCG 1 cut(s) 646
Eam1104I CTCTTC 1 cut(s) 394
Eam1105I GACNNNNNGTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 394
EciI GGCGGA 3 cut(s) 112, 259, 537
EclXI CGGCCG 1 cut(s) 646
Eco130I CCWWGG 1 cut(s) 819
Eco52I CGGCCG 1 cut(s) 646
Eco88I CYCGRG 1 cut(s) 337
EcoRI GAATTC 1 cut(s) 545
EcoT14I CCWWGG 1 cut(s) 819
ErhI CCWWGG 1 cut(s) 819
FaeI CATG 6 cut(s) 12, 130, 136, 166, 607, 977
FaqI GGGAC 1 cut(s) 696
FatI CATG 6 cut(s) 8, 126, 132, 162, 603, 973
FauI CCCGC 1 cut(s) 399
FauNDI CATATG 1 cut(s) 47
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 8 cut(s) 78, 95, 98, 137, 220, 530, 795, 1020
Fsp4HI GCNGC 8 cut(s) 78, 95, 98, 137, 220, 530, 795, 1020
FspBI CTAG 4 cut(s) 101, 365, 863, 932
GlaI GCGC 1 cut(s) 582
GluI GCNGC 8 cut(s) 78, 95, 98, 137, 220, 530, 795, 1020
GsaI CCCAGC 2 cut(s) 357, 833
HaeIII GGCC 9 cut(s) 263, 648, 668, 773, 818, 839, 904, 1007, 1054
HapII CCGG 8 cut(s) 81, 466, 645, 665, 815, 836, 1008, 1051
HgaI GACGC 5 cut(s) 100, 202, 276, 513, 572
HhaI GCGC 1 cut(s) 583
Hin1I GRCGYC 3 cut(s) 213, 287, 505
Hin1II CATG 6 cut(s) 12, 130, 136, 166, 607, 977
Hin6I GCGC 1 cut(s) 581
HinP1I GCGC 1 cut(s) 581
HincII GTYRAC 2 cut(s) 253, 463
HindII GTYRAC 2 cut(s) 253, 463
HinfI GANTC 5 cut(s) 618, 683, 694, 859, 917
HpaII CCGG 8 cut(s) 81, 466, 645, 665, 815, 836, 1008, 1051
HphI GGTGA 2 cut(s) 628, 745
Hpy166II GTNNAC 5 cut(s) 253, 316, 349, 463, 601
Hpy188I TCNGA 5 cut(s) 185, 322, 623, 922, 998
Hpy188III TCNNGA 3 cut(s) 370, 497, 566
Hpy8I GTNNAC 5 cut(s) 253, 316, 349, 463, 601
Hpy99I CGWCG 5 cut(s) 116, 284, 326, 392, 588
HpyAV CCTTC 3 cut(s) 572, 641, 649
HpyCH4III ACNGT 3 cut(s) 155, 788, 1027
HpyCH4IV ACGT 3 cut(s) 282, 324, 612
HpyCH4V TGCA 6 cut(s) 51, 130, 136, 258, 784, 797
HpyF10VI GCNNNNNNNGC 4 cut(s) 136, 219, 269, 845
HpyF3I CTNAG 3 cut(s) 679, 707, 1059
HpySE526I ACGT 3 cut(s) 282, 324, 612
Hsp92I GRCGYC 3 cut(s) 213, 287, 505
Hsp92II CATG 6 cut(s) 12, 130, 136, 166, 607, 977
HspAI GCGC 1 cut(s) 581
KroI GCCGGC 2 cut(s) 80, 814
KroNI GCCGGC 2 cut(s) 82, 816
Kzo9I GATC 1 cut(s) 415
LmnI GCTCC 5 cut(s) 144, 241, 338, 791, 838
Lsp1109I GCAGC 4 cut(s) 84, 106, 148, 781
LweI GCATC 1 cut(s) 752
MaeI CTAG 4 cut(s) 101, 365, 863, 932
MaeII ACGT 3 cut(s) 282, 324, 612
MaeIII GTNAC 1 cut(s) 431
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 6 cut(s) 16, 52, 411, 485, 647, 976
MfeI CAATTG 1 cut(s) 948
MhlI GDGCHC 1 cut(s) 335
MlsI TGGCCA 1 cut(s) 904
MluCI AATT 4 cut(s) 545, 852, 896, 948
MluNI TGGCCA 1 cut(s) 904
MmeI TCCRAC 4 cut(s) 216, 315, 345, 1021
Mox20I TGGCCA 1 cut(s) 904
MreI CGCCGGCG 1 cut(s) 80
MroNI GCCGGC 2 cut(s) 80, 814
MscI TGGCCA 1 cut(s) 904
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 3 cut(s) 131, 725, 1028
Msp20I TGGCCA 1 cut(s) 904
MspA1I CMGCKG 2 cut(s) 97, 357
MspI CCGG 8 cut(s) 81, 466, 645, 665, 815, 836, 1008, 1051
MspR9I CCNGG 1 cut(s) 645
MunI CAATTG 1 cut(s) 948
MvnI CGCG 1 cut(s) 583
MwoI GCNNNNNNNGC 4 cut(s) 136, 219, 269, 845
NaeI GCCGGC 2 cut(s) 82, 816
NciI CCSGG 1 cut(s) 645
NdeI CATATG 1 cut(s) 47
NdeII GATC 1 cut(s) 415
NgoMIV GCCGGC 2 cut(s) 80, 814
NlaIII CATG 6 cut(s) 12, 130, 136, 166, 607, 977
NlaIV GGNNCC 1 cut(s) 1018
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 431
NspI RCATGY 3 cut(s) 12, 136, 607
OliI CACNNNNGTG 2 cut(s) 725, 1028
PcsI WCGNNNNNNNCGW 3 cut(s) 156, 165, 174
PdiI GCCGGC 2 cut(s) 82, 816
PfeI GAWTC 5 cut(s) 618, 683, 694, 859, 917
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 8 cut(s) 79, 96, 99, 138, 221, 531, 796, 1021
PspFI CCCAGC 2 cut(s) 353, 829
PspN4I GGNNCC 1 cut(s) 1018
PspPI GGNCC 2 cut(s) 262, 1005
PsyI GACNNNGTC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 97
RsaI GTAC 3 cut(s) 278, 317, 476
RsaNI GTAC 3 cut(s) 277, 316, 475
RseI CAYNNNNRTG 3 cut(s) 131, 725, 1028
SalI GTCGAC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 8 cut(s) 78, 95, 98, 137, 220, 530, 795, 1020
Sau3AI GATC 1 cut(s) 415
Sau96I GGNCC 2 cut(s) 262, 1005
ScrFI CCNGG 1 cut(s) 645
SduI GDGCHC 1 cut(s) 335
SfaNI GCATC 1 cut(s) 752
SfcI CTRYAG 1 cut(s) 843
SgrAI CRCCGGYG 1 cut(s) 80
SmiMI CAYNNNNRTG 3 cut(s) 131, 725, 1028
Sse9I AATT 4 cut(s) 545, 852, 896, 948
SspMI CTAG 4 cut(s) 101, 365, 863, 932
StyD4I CCNGG 1 cut(s) 643
StyI CCWWGG 1 cut(s) 819
TaaI ACNGT 3 cut(s) 155, 788, 1027
TaiI ACGT 3 cut(s) 285, 327, 615
TaqI TCGA 4 cut(s) 168, 252, 586, 850
TasI AATT 4 cut(s) 545, 852, 896, 948
TatI WGTACW 1 cut(s) 315
TauI GCSGC 4 cut(s) 80, 222, 532, 1022
TfiI GAWTC 5 cut(s) 618, 683, 694, 859, 917
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 1030
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 4 cut(s) 94, 97, 136, 794
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 6 cut(s) 17, 34, 859, 953, 962, 977
TspGWI ACGGA 4 cut(s) 254, 290, 405, 408
TspRI CASTG 1 cut(s) 1030
Tth111I GACNNNGTC 1 cut(s) 155
XapI RAATTY 2 cut(s) 545, 896
XceI RCATGY 3 cut(s) 12, 136, 607
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 4 cut(s) 101, 365, 863, 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.