MD15G1068700.v1.1

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000556
Physical Location & Seq
Forward (+)
4752172 .. 4752396
225 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1068700.v1.1.491

Sequence Viewer

Length: 225 bp
ATGCGAAGAACAACGTGGTTAACCTACCCGCAAATACCCGGCGGCGACCCAAGGTCGTACCCTAGCACCGGGTCAGCCGTTTTTCTGCCGTTAAGGAACTTGACGGCTCCATCTATTGAGGCTGAGGCTTTGGTCTGCTGTGGAGCTCCGAAAGGGTCTTATATTCAGGCAACAAAGGGTATTTTTGTGGAAGCTCTAAACACATGCGATCGGATATCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

75

Amino Acids

7.99

Weight (kDa)

8.99

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 8 - 73 3e-18 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 29, 42
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 68
AhdI GACNNNNNGTC 1 cut(s) 52
AluBI AGCT 2 cut(s) 146, 194
AluI AGCT 2 cut(s) 146, 194
Alw21I GWGCWC 1 cut(s) 148
AsuC2I CCSGG 2 cut(s) 39, 70
BanII GRGCYC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 148
BbvCI CCTCAGC 1 cut(s) 123
BccI CCATC 1 cut(s) 118
BceAI ACGGC 3 cut(s) 62, 73, 120
BcnI CCSGG 2 cut(s) 39, 70
BfaI CTAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 2 cut(s) 39, 70
BmeRI GACNNNNNGTC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 2 cut(s) 39, 70
Bpu10I CCTNAGC 1 cut(s) 123
BpuMI CCSGG 2 cut(s) 39, 70
BsaJI CCNNGG 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 211
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 2 cut(s) 39, 69
BslI CCNNNNNNNGG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 208
BspACI CCGC 2 cut(s) 29, 42
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 123
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstMCI CGRYCG 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 207
BstSCI CCNGG 2 cut(s) 37, 68
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 204
CviJI RGCY 6 cut(s) 77, 107, 122, 128, 146, 194
CviKI_1 RGCY 6 cut(s) 77, 107, 122, 128, 146, 194
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 123
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DriI GACNNNNNGTC 1 cut(s) 52
Eam1105I GACNNNNNGTC 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 148
Eco32I GATATC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 146
EcoRV GATATC 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 1 cut(s) 207
FaiI YATR 2 cut(s) 162, 205
FatI CATG 1 cut(s) 203
FauI CCCGC 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 43
HapII CCGG 2 cut(s) 39, 69
Hin1II CATG 1 cut(s) 207
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HpaI GTTAAC 1 cut(s) 21
HpaII CCGG 2 cut(s) 39, 69
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 2 cut(s) 150, 213
Hpy8I GTNNAC 1 cut(s) 21
HpyCH4IV ACGT 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 1 cut(s) 207
KspAI GTTAAC 1 cut(s) 21
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 3 cut(s) 112, 143, 151
LpnPI CCDG 3 cut(s) 52, 82, 152
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 14
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 148
MnlI CCTC 2 cut(s) 112, 118
MseI TTAA 2 cut(s) 20, 92
MspI CCGG 2 cut(s) 39, 69
MspR9I CCNGG 2 cut(s) 39, 70
NciI CCSGG 2 cut(s) 39, 70
NdeII GATC 1 cut(s) 208
NlaIII CATG 1 cut(s) 207
NlaIV GGNNCC 1 cut(s) 108
NspI RCATGY 1 cut(s) 207
PkrI GCNGC 1 cut(s) 44
Ple19I CGATCG 1 cut(s) 211
Psp124BI GAGCTC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 108
PvuI CGATCG 1 cut(s) 211
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SacI GAGCTC 1 cut(s) 148
SaqAI TTAA 2 cut(s) 20, 92
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 39, 70
SduI GDGCHC 1 cut(s) 148
SetI ASST 5 cut(s) 17, 26, 56, 148, 196
SsiI CCGC 2 cut(s) 29, 42
SspMI CTAG 1 cut(s) 63
SstI GAGCTC 1 cut(s) 148
StyD4I CCNGG 2 cut(s) 37, 68
StyI CCWWGG 1 cut(s) 50
TaiI ACGT 1 cut(s) 17
TauI GCSGC 1 cut(s) 45
Tru1I TTAA 2 cut(s) 20, 92
Tru9I TTAA 2 cut(s) 20, 92
XceI RCATGY 1 cut(s) 207
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.