RLG00000011177

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000556
Physical Location & Seq
Reverse (-)
7375478 .. 7376117
640 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011177

Sequence Viewer

Length: 420 bp
ATGGTGCAAACCAATGCCTCATTCTCCTCTGGCTCGACATTGCTGGACGATTGTCTAGTTCAGATTGGTGATTACAATGACGGAGAACGTAGGGTCATGTTTTTCAAGTCTTGTCCGGATTGTGATTGGAATGAGATTGAGTACGGTTTAGCCGTTCCACGATGGTACTCAGCCAATGACATTCTGCCAGATGGCCGAGAGATCATTATCGATACCTGTGGGGAACCGAGGTCTTATCTAAGAACCGGTTTAGCGGTTTTGCTGCCATTGAAGAACTTACAAGCTCAACTTGTGGAAGCCGAGGTTTTGATATGTGGTAGAGCTCACAAATGGTCTTATATCCAAGTAGGGAATGACACTTTTGTAGGAGCTGTAAGGACTTGTGCTTGGATCAAAATAACCGACCCGAATCCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

140

Amino Acids

15.57

Weight (kDa)

4.63

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 1 - 70 4.7e-18 Glyoxal oxidase N-terminus
Glyoxal_oxid_N PF07250 74 - 138 1.1e-12 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 115
AciI CCGC 1 cut(s) 254
AclWI GGATC 1 cut(s) 398
AcoI YGGCCR 1 cut(s) 193
AfaI GTAC 2 cut(s) 143, 167
AgeI ACCGGT 1 cut(s) 245
AgsI TTSAA 2 cut(s) 106, 271
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 3 cut(s) 284, 323, 371
AluI AGCT 3 cut(s) 284, 323, 371
Alw21I GWGCWC 1 cut(s) 325
AlwI GGATC 1 cut(s) 398
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 262
AsiGI ACCGGT 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 80
BanII GRGCYC 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 249
BccI CCATC 2 cut(s) 156, 185
BceAI ACGGC 1 cut(s) 137
BfaI CTAG 1 cut(s) 56
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 225
BoxI GACNNNNGTC 1 cut(s) 51
Bsa29I ATCGAT 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 227, 300
BsaWI WCCGGW 2 cut(s) 115, 245
Bse118I RCCGGY 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 206
BseAI TCCGGA 1 cut(s) 115
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 227, 300
BseJI GATNNNNATC 1 cut(s) 206
BseMI GCAATG 1 cut(s) 38
BseMII CTCAG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 1 cut(s) 249
BshFI GGCC 1 cut(s) 195
BshTI ACCGGT 1 cut(s) 245
BshVI ATCGAT 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 2 cut(s) 116, 246
BsnI GGCC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 2 cut(s) 201, 390
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 182
BspDI ATCGAT 1 cut(s) 210
BspEI TCCGGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 245
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 227, 300
BssMI GATC 2 cut(s) 201, 390
Bst4CI ACNGT 1 cut(s) 146
BstDEI CTNAG 2 cut(s) 169, 239
BstKTI GATC 2 cut(s) 204, 393
BstMBI GATC 2 cut(s) 201, 390
BstPAI GACNNNNGTC 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 249
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 1 cut(s) 195
BsuTUI ATCGAT 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 245
ClaI ATCGAT 1 cut(s) 210
Csp6I GTAC 2 cut(s) 142, 166
CspAI ACCGGT 1 cut(s) 245
CviAII CATG 1 cut(s) 97
CviJI RGCY 8 cut(s) 33, 152, 173, 195, 284, 299, 323, 371
CviKI_1 RGCY 8 cut(s) 33, 152, 173, 195, 284, 299, 323, 371
CviQI GTAC 2 cut(s) 142, 166
DdeI CTNAG 2 cut(s) 169, 239
DpnI GATC 2 cut(s) 203, 392
DpnII GATC 2 cut(s) 201, 390
EaeI YGGCCR 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 325
FaeI CATG 1 cut(s) 100
FaiI YATR 3 cut(s) 98, 313, 339
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 1 cut(s) 56
GluI GCNGC 1 cut(s) 263
HaeIII GGCC 1 cut(s) 195
HapII CCGG 2 cut(s) 116, 246
Hin1II CATG 1 cut(s) 100
HinfI GANTC 1 cut(s) 409
HpaII CCGG 2 cut(s) 116, 246
HphI GGTGA 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 2 cut(s) 116, 413
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 7
HpyF3I CTNAG 2 cut(s) 169, 239
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 1 cut(s) 100
Kpn2I TCCGGA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 201, 390
LmnI GCTCC 1 cut(s) 368
LpnPI CCDG 6 cut(s) 15, 29, 129, 201, 229, 259
Lsp1109I GCAGC 1 cut(s) 249
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 88
MalI GATC 2 cut(s) 203, 392
MboI GATC 2 cut(s) 201, 390
MboII GAAGA 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 325
MnlI CCTC 4 cut(s) 28, 37, 222, 295
MroI TCCGGA 1 cut(s) 115
MspI CCGG 2 cut(s) 116, 246
NdeII GATC 2 cut(s) 201, 390
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 225
NmeAIII GCCGAG 2 cut(s) 221, 325
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 1 cut(s) 409
PinAI ACCGGT 1 cut(s) 245
PkrI GCNGC 1 cut(s) 264
PshAI GACNNNNGTC 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 225
RsaI GTAC 2 cut(s) 143, 167
RsaNI GTAC 2 cut(s) 142, 166
SacI GAGCTC 1 cut(s) 325
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 2 cut(s) 201, 390
SduI GDGCHC 1 cut(s) 325
SetI ASST 7 cut(s) 91, 218, 233, 286, 306, 325, 373
SsiI CCGC 1 cut(s) 254
SspMI CTAG 1 cut(s) 56
SstI GAGCTC 1 cut(s) 325
TaaI ACNGT 1 cut(s) 146
TaiI ACGT 1 cut(s) 91
TaqI TCGA 2 cut(s) 35, 210
TfiI GAWTC 1 cut(s) 409
TseI GCWGC 1 cut(s) 262
TspGWI ACGGA 1 cut(s) 96
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.