Rh6AG426400

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000556
Physical Location & Seq
Forward (+)
61811398 .. 61811766
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG426400.1

Sequence Viewer

Length: 369 bp
ATGGTGCAAACTGATGTCTGGCGCTCTTCTGACTCGGCAATGCTGGACAGTCGTCTAGTCCAGACTGGTGGTTATAATGACGGAGAACGTAGGGTCAGGTTTTTCGAGTCTTGTCCGAATTATGATTGGCATGAGATTGAGTACGGTTTAGCCGCTCCGCGATGGTACTCAACCAATCACATTCTGCCAGATGGCCAAGAGATCATTATCGGAGACCGGGGACAGTTCAACTACGAGTTCTATCCCAAAACTGAATCTACTCAGAACGTGTACAATTTTCCAACAACATTGTTAAAACGTACCCTCAGATACCTGGTGGCAATTCGAGGTCTTATCCGAGCACCGGTTCAGCGGTTTTGCTGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

122

Amino Acids

14.36

Weight (kDa)

6.82

Isoelectric Point (pI)

62.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 1 - 94 8.6e-33 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19900 AT1G75620
fragaria_vesca FvH4_2g08320 FvH4_2g08340 FvH4_2g39130 FvH4_2g39150
malus_domestica MD08G1016600.v1.1 MD08G1016900.v1.1 MD08G1017000.v1.1 MD08G1082100.v1.1 MD13G1087700.v1.1 MD14G1007900.v1.1 MD15G1015700.v1.1 MD15G1015800.v1.1 MD15G1015900.v1.1 MD15G1016000.v1.1 MD15G1068600.v1.1 MD15G1068700.v1.1
prunus_persica Prupe.1G369700_v2.0.a1 Prupe.1G369800_v2.0.a1
pyrus_communis pycom08g01440 pycom08g01450 pycom08g01480 pycom15g01350
rosa_chinensis RchiOBHm_Chr4g0408881 RchiOBHm_Chr6g0263281 RchiOBHm_Chr6g0263301 RchiOBHm_Chr6g0263331 RchiOBHm_Chr6g0302251 RchiOBHm_Chr6g0302271 RchiOBHm_Chr6g0302321 RchiOBHm_Chr6g0302331
rosa_laevigata RLG00000008616 RLG00000011177 RLG00000011178 RLG00000011182 RLG00000014357 RLG00000014362 RLG00000014363 RLG00000014365 RLG00000018749
rosa_multiflora Rmu_co8182314.1_g000001 Rmu_co8224130.1_g000001 Rmu_co8328361.1_g000001 Rmu_co8367879.1_g000001 Rmu_sc0000310.1_g000016 Rmu_sc0000310.1_g000033 Rmu_sc0001855.1_g000020 Rmu_sc0002778.1_g000005 Rmu_sc0003089.1_g000001 Rmu_sc0003089.1_g000012 Rmu_sc0003089.1_g000021 Rmu_sc0003633.1_g000013 Rmu_sc0003633.1_g000022
rosa_roxburghii Rroxscaffold_176G00431040 Rroxscaffold_5G00353250 Rroxscaffold_7G00165850 Rroxscaffold_7G00165920 Rroxscaffold_7G00165930 Rroxscaffold_7G00204510 Rroxscaffold_7G00204560
rosa_rugosa Rorug02G0245300 Rorug04G0088500 Rorug06G0004200 Rorug06G0004300 Rorug06G0313500 Rorug06G0313600 Rorug06G0313700
rosa_samantha Rh4CG160500 Rh6AG123400 Rh6AG123700 Rh6AG124000 Rh6AG426200 Rh6AG426400 Rh6AG426600 Rh7CG259000
rosa_wichuraiana Rw4G012520 Rw6G010610 Rw6G010620 Rw6G010640 Rw6G010780 Rw6G036900 Rw6G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 75
AccBSI CCGCTC 1 cut(s) 155
AccII CGCG 1 cut(s) 160
AciI CCGC 3 cut(s) 153, 158, 352
AcoI YGGCCR 1 cut(s) 193
AfaI GTAC 4 cut(s) 143, 167, 272, 301
AfiI CCNNNNNNNGG 1 cut(s) 343
AflIII ACRYGT 1 cut(s) 267
AgeI ACCGGT 1 cut(s) 343
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 1 cut(s) 312
Alw21I GWGCWC 1 cut(s) 343
Alw26I GTCTC 1 cut(s) 207
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 360
AsiGI ACCGGT 1 cut(s) 343
AspLEI GCGC 1 cut(s) 24
AsuC2I CCSGG 1 cut(s) 218
BalI TGGCCA 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 343
BbvI GCAGC 1 cut(s) 347
BccI CCATC 2 cut(s) 156, 185
BciT130I CCWGG 1 cut(s) 314
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 25
BisI GCNGC 2 cut(s) 153, 361
BlsI GCNGC 2 cut(s) 154, 362
Bme1390I CCNGG 2 cut(s) 218, 314
BmrFI CCNGG 2 cut(s) 218, 314
BoxI GACNNNNGTC 1 cut(s) 51
BpuMI CCSGG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 343
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse118I RCCGGY 1 cut(s) 343
Bse1I ACTGG 1 cut(s) 70
Bse3DI GCAATG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 206
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 217
BseJI GATNNNNATC 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 275, 319
BseNI ACTGG 1 cut(s) 70
BseXI GCAGC 1 cut(s) 347
Bsh1236I CGCG 1 cut(s) 160
BshFI GGCC 1 cut(s) 195
BshTI ACCGGT 1 cut(s) 343
BsiHKAI GWGCWC 1 cut(s) 343
BsiSI CCGG 2 cut(s) 217, 344
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 1 cut(s) 195
Bso31I GGTCTC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 343
Bsp1407I TGTACA 1 cut(s) 270
Bsp143I GATC 1 cut(s) 201
BspACI CCGC 3 cut(s) 153, 158, 352
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 2 cut(s) 274, 318
BspFNI CGCG 1 cut(s) 160
BspQI GCTCTTC 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 207
BsrBI CCGCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 343
BsrGI TGTACA 1 cut(s) 270
BsrI ACTGG 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 3 cut(s) 50, 146, 225
Bst6I CTCTTC 1 cut(s) 31
BstAUI TGTACA 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 261, 305
BstFNI CGCG 1 cut(s) 160
BstH2I RGCGCY 1 cut(s) 25
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 1 cut(s) 204
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 1 cut(s) 201
BstNI CCWGG 1 cut(s) 314
BstPAI GACNNNNGTC 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 216, 312
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 347
BstXI CCANNNNNNTGG 1 cut(s) 68
BsuRI GGCC 1 cut(s) 195
BtgZI GCGATG 1 cut(s) 175
CfoI GCGC 1 cut(s) 24
Cfr10I RCCGGY 1 cut(s) 343
CsiI ACCWGGT 1 cut(s) 312
Csp6I GTAC 4 cut(s) 142, 166, 271, 300
CspAI ACCGGT 1 cut(s) 343
CviAII CATG 1 cut(s) 131
CviJI RGCY 2 cut(s) 152, 195
CviKI_1 RGCY 2 cut(s) 152, 195
CviQI GTAC 4 cut(s) 142, 166, 271, 300
DdeI CTNAG 2 cut(s) 261, 305
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco31I GGTCTC 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 312
FaeI CATG 1 cut(s) 134
FaiI YATR 3 cut(s) 75, 123, 132
FaqI GGGAC 1 cut(s) 234
FatI CATG 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 153, 361
Fsp4HI GCNGC 2 cut(s) 153, 361
FspBI CTAG 1 cut(s) 56
GlaI GCGC 1 cut(s) 23
GluI GCNGC 2 cut(s) 153, 361
HaeII RGCGCY 1 cut(s) 25
HaeIII GGCC 1 cut(s) 195
HapII CCGG 2 cut(s) 217, 344
HhaI GCGC 1 cut(s) 24
Hin1II CATG 1 cut(s) 134
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HinfI GANTC 3 cut(s) 32, 107, 254
HpaII CCGG 2 cut(s) 217, 344
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 6 cut(s) 31, 117, 212, 264, 308, 338
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 271
HpyCH4III ACNGT 3 cut(s) 50, 146, 225
HpyCH4IV ACGT 3 cut(s) 88, 267, 298
HpyCH4V TGCA 1 cut(s) 7
HpyF3I CTNAG 2 cut(s) 261, 305
HpySE526I ACGT 3 cut(s) 88, 267, 298
Hsp92II CATG 1 cut(s) 134
HspAI GCGC 1 cut(s) 22
Kzo9I GATC 1 cut(s) 201
LguI GCTCTTC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 1 cut(s) 347
MabI ACCWGGT 1 cut(s) 312
MaeI CTAG 1 cut(s) 56
MaeII ACGT 3 cut(s) 88, 267, 298
MalI GATC 1 cut(s) 203
MbiI CCGCTC 1 cut(s) 155
MboI GATC 1 cut(s) 201
MboII GAAGA 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 343
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 3 cut(s) 118, 274, 321
MluNI TGGCCA 1 cut(s) 195
MlyI GAGTC 2 cut(s) 26, 116
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 2 cut(s) 314, 320
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
MseI TTAA 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 352
MspI CCGG 2 cut(s) 217, 344
MspR9I CCNGG 2 cut(s) 218, 314
MvaI CCWGG 1 cut(s) 314
MvnI CGCG 1 cut(s) 160
NciI CCSGG 1 cut(s) 218
NdeII GATC 1 cut(s) 201
NlaIII CATG 1 cut(s) 134
NmeAIII GCCGAG 1 cut(s) 14
PciSI GCTCTTC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 254
PinAI ACCGGT 1 cut(s) 343
PkrI GCNGC 2 cut(s) 154, 362
PleI GAGTC 2 cut(s) 26, 115
PpsI GAGTC 2 cut(s) 26, 115
PshAI GACNNNNGTC 1 cut(s) 51
PsiI TTATAA 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
RsaI GTAC 4 cut(s) 143, 167, 272, 301
RsaNI GTAC 4 cut(s) 142, 166, 271, 300
SapI GCTCTTC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 2 cut(s) 153, 361
Sau3AI GATC 1 cut(s) 201
SchI GAGTC 2 cut(s) 26, 116
ScrFI CCNGG 2 cut(s) 218, 314
SduI GDGCHC 1 cut(s) 343
SetI ASST 6 cut(s) 91, 101, 270, 301, 315, 331
SexAI ACCWGGT 1 cut(s) 312
Sse9I AATT 3 cut(s) 118, 274, 321
SsiI CCGC 3 cut(s) 153, 158, 352
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 2 cut(s) 216, 312
TaaI ACNGT 3 cut(s) 50, 146, 225
TaiI ACGT 3 cut(s) 91, 270, 301
TaqI TCGA 2 cut(s) 105, 325
TasI AATT 3 cut(s) 118, 274, 321
TatI WGTACW 1 cut(s) 270
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TseI GCWGC 1 cut(s) 360
TspGWI ACGGA 1 cut(s) 96
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.