Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002681

Physical Location & Seq

Genomic Coordinates Reverse (-)

29950746 .. 29951066

Gene Structure 321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1305300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGATCGTCTCGGGTTCCTTCGACGAAACGGTGCGTATTTGGGATGTTAAGACCGGGAAATGCTTGAAGGTTTTGCCGGCTCACTTCGACCCTGTCACCGCCGTCGATTTCAATCGGGATGGCTCGGTTATCGTCTCCAGCAGCTATGATGGGTTGTGCAGGACCTGGGATGCCTCCACTGGTCACTGCACCAAGACATTGATCGATGATGAAAATCCTCCGGTTTCGTATGTTAAATTTGCGCCTCATGGCAAGTACATTCTTGTTGGCACATTGGATGATACTTTGGTAAGCTCAGTTCCCACTTCTTACTTTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000123 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0005929 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009987 GO:0010228 GO:0015630 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022008 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030182 GO:0031175 GO:0031248 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034708 GO:0034968 GO:0035097 GO:0036064 GO:0036211 GO:0042393 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0044665 GO:0044782 GO:0048188 GO:0048468 GO:0048608 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051276 GO:0051568 GO:0060271 GO:0061458 GO:0070013 GO:0070925 GO:0071339 GO:0071704 GO:0071840 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

107

Amino Acids

11.59

Weight (kDa)

5.08

Isoelectric Point (pI)

22.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	1 - 96	4.4e-47	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	1 - 96	2.1e-12	WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	1 - 65	1.3e-07	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	2 - 96	4.7e-21	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	2 - 96	3.6e-18	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	2 - 67	1.1e-11	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	2 - 95	7.5e-12	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	2 - 95	2.4e-09	G protein beta WD-40 repeat protein
WDR90_beta-prop_4th	PF23342	2 - 80	2.9e-06	WDR90, 4th beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	2 - 70	1.3e-08	CAF1B/HIR1 beta-propeller domain
WD40_CDC20-Fz	PF24807	2 - 89	3.4e-08	CDC20/Fizzy WD40 domain
WDR55	PF24796	2 - 61	7.4e-06	WDR55
WD40_Prp19	PF24814	3 - 93	4.8e-15	Prp19 WD40 domain
Beta-prop_EML	PF23409	3 - 96	4.7e-07	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_Aladin	PF25460	6 - 98	5.2e-06	Aladin seven-bladed propeller
Beta-prop_WDR75_1st	PF23869	8 - 70	9.6e-06	WD repeat-containing protein 75 first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	8 - 94	3.6e-09	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	19 - 57	2.3e-10	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49660
fragaria_vesca	FvH4_1g18760
malus_domestica	MD01G1047000.v1.1 MD11G1213300.v1.1 MD15G1305300.v1.1 MD16G1282400.v1.1
prunus_persica	Prupe.6G211800_v2.0.a1
pyrus_communis	pycom01g07290 pycom15g26850 pycom16g25220
rosa_chinensis	RchiOBHm_Chr1g0324081 RchiOBHm_Chr2g0109631 RchiOBHm_Chr4g0412241 RchiOBHm_Chr7g0189251
rosa_laevigata	RLG00000017751 RLG00000018963 RLG00000020091 RLG00000024634 RLG00000029197 RLG00000032867 RLG00000034693 RLG00000035499
rosa_multiflora	Rmu_sc0000595.1_g000009 Rmu_sc0004483.1_g000044 Rmu_sc0010548.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113400 Rroxscaffold_2G00134080
rosa_rugosa	Rorug02G0161400
rosa_samantha	Rh1AG321900 Rh2AG213600 Rh2BG224000 Rh2CG215800 Rh2CG303700 Rh2DG219100 Rh5DG065100 Rh5DG130500 Rh7DG103300
rosa_wichuraiana	Rw1G015840 Rw2G032920 Rw2G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	1 cut(s)	257
AgsI	TTSAA	2 cut(s)	67, 112
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	2 cut(s)	144, 294
AluI	AGCT	2 cut(s)	144, 294
Alw26I	GTCTC	2 cut(s)	13, 139
AlwNI	CAGNNNCTG	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	162
BaeI	ACNNNNGTAYC	2 cut(s)	273, 306
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	2 cut(s)	113, 143
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	13, 139
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	2 cut(s)	55, 166
Bme18I	GGWCC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	2 cut(s)	55, 166
BmsI	GCATC	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	204
BsaBI	GATNNNNATC	2 cut(s)	111, 213
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	220
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	184
Bse8I	GATNNNNATC	2 cut(s)	111, 213
BseBI	CCWGG	1 cut(s)	166
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	4 cut(s)	49, 124, 175, 283
BseJI	GATNNNNATC	2 cut(s)	111, 213
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	153
BsgI	GTGCAG	2 cut(s)	172, 178
BshVI	ATCGAT	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	10
BsiSI	CCGG	3 cut(s)	54, 77, 221
BsmAI	GTCTC	2 cut(s)	13, 139
BsmBI	CGTCTC	2 cut(s)	13, 139
BsoBI	CYCGRG	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	3, 201
BspACI	CCGC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	308
BspDI	ATCGAT	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	16
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	2 cut(s)	3, 201
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	295
BstF5I	GGATG	4 cut(s)	49, 124, 175, 283
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	2 cut(s)	6, 204
BstMAI	GTCTC	2 cut(s)	13, 139
BstMBI	GATC	2 cut(s)	3, 201
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	53, 164
BstV1I	GCAGC	1 cut(s)	153
Bsu15I	ATCGAT	1 cut(s)	204
BsuTUI	ATCGAT	1 cut(s)	204
BtsCI	GGATG	4 cut(s)	49, 124, 175, 283
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	177, 184
Cac8I	GCNNGC	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	165
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	4 cut(s)	80, 123, 144, 294
CviKI_1	RGCY	4 cut(s)	80, 123, 144, 294
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	1 cut(s)	295
DpnI	GATC	2 cut(s)	5, 203
DpnII	GATC	2 cut(s)	3, 201
Eco47I	GGWCC	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	164
Esp3I	CGTCTC	2 cut(s)	13, 139
FaeI	CATG	1 cut(s)	251
FaiI	YATR	3 cut(s)	147, 231, 249
FatI	CATG	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	4 cut(s)	56, 131, 182, 290
Fsp4HI	GCNGC	1 cut(s)	142
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	142
GsuI	CTGGAG	1 cut(s)	121
HapII	CCGG	3 cut(s)	54, 77, 221
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	251
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HpaII	CCGG	3 cut(s)	54, 77, 221
HphI	GGTGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	116
Hpy99I	CGWCG	2 cut(s)	26, 107
HpyAV	CCTTC	2 cut(s)	28, 61
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	159, 189
HpyF3I	CTNAG	1 cut(s)	295
Hsp92II	CATG	1 cut(s)	251
HspAI	GCGC	1 cut(s)	242
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	3, 201
LpnPI	CCDG	9 cut(s)	67, 90, 105, 145, 151, 151, 165, 178, 234
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	1 cut(s)	160
MaeIII	GTNAC	2 cut(s)	94, 182
MalI	GATC	2 cut(s)	5, 203
MboI	GATC	2 cut(s)	3, 201
MluCI	AATT	1 cut(s)	236
MnlI	CCTC	3 cut(s)	184, 228, 255
MroNI	GCCGGC	1 cut(s)	76
MseI	TTAA	2 cut(s)	48, 234
MspI	CCGG	3 cut(s)	54, 77, 221
MspR9I	CCNGG	2 cut(s)	55, 166
MvaI	CCWGG	1 cut(s)	166
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	2 cut(s)	3, 201
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	94, 182
PdiI	GCCGGC	1 cut(s)	78
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	162
PspPPI	RGGWCCY	1 cut(s)	162
PsrI	GAACNNNNNNTAC	2 cut(s)	282, 314
PstNI	CAGNNNCTG	1 cut(s)	165
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	48, 234
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	2 cut(s)	3, 201
Sau96I	GGNCC	1 cut(s)	162
ScrFI	CCNGG	2 cut(s)	55, 166
SetI	ASST	4 cut(s)	72, 146, 167, 296
SfaNI	GCATC	1 cut(s)	160
SinI	GGWCC	1 cut(s)	162
Sse9I	AATT	1 cut(s)	236
SsiI	CCGC	1 cut(s)	99
StyD4I	CCNGG	2 cut(s)	53, 164
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	4 cut(s)	21, 87, 105, 204
TasI	AATT	1 cut(s)	236
TatI	WGTACW	1 cut(s)	255
Tru1I	TTAA	2 cut(s)	48, 234
Tru9I	TTAA	2 cut(s)	48, 234
TscAI	CASTG	2 cut(s)	184, 191
TseFI	GTSAC	2 cut(s)	94, 182
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	2 cut(s)	94, 182
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	2 cut(s)	184, 191
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.