RchiOBHm_Chr4g0412241

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002681
Physical Location & Seq
Forward (+)
35975763 .. 35977283
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38296

Sequence Viewer

Length: 294 bp
ATGGACCTGCTTCCCAGGCCTGGCCAATCGAACCTCCGTGCCCCTACGACACCATTTGATTTGATTCTCAGATCCTTCACCAGTTGGGCATTTGACAATCCAGATTTGTCTTTTTGTATTTGTTGTGATCTTGGTCTGAATTGGCTGTGGCGGAGGTCGGGTAATCGATCCAGATTTGGATTGATGTTGTTTGATGTTACCCAGGCTGTGAGGATCGGAGTTAGGGCCTTGATTGGTGGTGGGATTCGCTGTGACTTCTCTTTTTCTGGAAGATCGATGCGATGGCTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.1

Weight (kDa)

10.94

Isoelectric Point (pI)

68.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 15
AciI CCGC 1 cut(s) 151
AclWI GGATC 3 cut(s) 66, 162, 221
AcoI YGGCCR 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 20
AjnI CCWGG 3 cut(s) 14, 19, 201
AlwI GGATC 3 cut(s) 66, 162, 221
AoxI GGCC 3 cut(s) 17, 22, 225
AspS9I GGNCC 2 cut(s) 4, 225
AsuHPI GGTGA 1 cut(s) 70
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 43
BalI TGGCCA 1 cut(s) 24
BccI CCATC 1 cut(s) 276
BciT130I CCWGG 3 cut(s) 16, 21, 203
BfuAI ACCTGC 1 cut(s) 15
Bme1390I CCNGG 3 cut(s) 16, 21, 203
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 225
BmrFI CCNGG 3 cut(s) 16, 21, 203
BmsI GCATC 1 cut(s) 267
Bsa29I ATCGAT 2 cut(s) 166, 275
BsaJI CCNNGG 2 cut(s) 14, 201
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 81
BseBI CCWGG 3 cut(s) 16, 21, 203
BseCI ATCGAT 2 cut(s) 166, 275
BseDI CCNNGG 2 cut(s) 14, 201
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 81
BseSI GKGCMC 1 cut(s) 43
BshFI GGCC 3 cut(s) 19, 24, 227
BshVI ATCGAT 2 cut(s) 166, 275
BslI CCNNNNNNNGG 1 cut(s) 20
BsnI GGCC 3 cut(s) 19, 24, 227
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 5 cut(s) 71, 127, 167, 213, 272
BspACI CCGC 1 cut(s) 151
BspANI GGCC 3 cut(s) 19, 24, 227
BspCNI CTCAG 1 cut(s) 81
BspDI ATCGAT 2 cut(s) 166, 275
BspMI ACCTGC 1 cut(s) 15
BspPI GGATC 3 cut(s) 66, 162, 221
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 2 cut(s) 14, 201
BssMI GATC 5 cut(s) 71, 127, 167, 213, 272
Bst2UI CCWGG 3 cut(s) 16, 21, 203
BstDEI CTNAG 1 cut(s) 68
BstKTI GATC 5 cut(s) 74, 130, 170, 216, 275
BstMBI GATC 5 cut(s) 71, 127, 167, 213, 272
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 3 cut(s) 16, 21, 203
BstSCI CCNGG 3 cut(s) 14, 19, 201
BstSLI GKGCMC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
Bsu15I ATCGAT 2 cut(s) 166, 275
BsuRI GGCC 3 cut(s) 19, 24, 227
BsuTUI ATCGAT 2 cut(s) 166, 275
BveI ACCTGC 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 4, 225
ClaI ATCGAT 2 cut(s) 166, 275
CviJI RGCY 6 cut(s) 19, 24, 145, 206, 227, 286
CviKI_1 RGCY 6 cut(s) 19, 24, 145, 206, 227, 286
DdeI CTNAG 1 cut(s) 68
DpnI GATC 5 cut(s) 73, 129, 169, 215, 274
DpnII GATC 5 cut(s) 71, 127, 167, 213, 272
EaeI YGGCCR 1 cut(s) 22
EciI GGCGGA 1 cut(s) 166
Eco147I AGGCCT 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 4
EcoO109I RGGNCCY 1 cut(s) 225
EcoRII CCWGG 3 cut(s) 14, 19, 201
HaeIII GGCC 3 cut(s) 19, 24, 227
HinfI GANTC 2 cut(s) 64, 244
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 3 cut(s) 71, 138, 218
Hpy188III TCNNGA 3 cut(s) 101, 171, 267
HpyAV CCTTC 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 68
Kzo9I GATC 5 cut(s) 71, 127, 167, 213, 272
LweI GCATC 1 cut(s) 267
MaeIII GTNAC 2 cut(s) 196, 251
MalI GATC 5 cut(s) 73, 129, 169, 215, 274
MboI GATC 5 cut(s) 71, 127, 167, 213, 272
MboII GAAGA 1 cut(s) 282
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 24
MluCI AATT 1 cut(s) 139
MluNI TGGCCA 1 cut(s) 24
MnlI CCTC 3 cut(s) 44, 147, 204
Mox20I TGGCCA 1 cut(s) 24
MscI TGGCCA 1 cut(s) 24
Msp20I TGGCCA 1 cut(s) 24
MspR9I CCNGG 3 cut(s) 16, 21, 203
MvaI CCWGG 3 cut(s) 16, 21, 203
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeII GATC 5 cut(s) 71, 127, 167, 213, 272
NmuCI GTSAC 1 cut(s) 251
PceI AGGCCT 1 cut(s) 19
PfeI GAWTC 2 cut(s) 64, 244
Psp6I CCWGG 3 cut(s) 14, 19, 201
PspGI CCWGG 3 cut(s) 14, 19, 201
PspPI GGNCC 2 cut(s) 4, 225
PsuI RGATCY 1 cut(s) 71
Sau3AI GATC 5 cut(s) 71, 127, 167, 213, 272
Sau96I GGNCC 2 cut(s) 4, 225
ScrFI CCNGG 3 cut(s) 16, 21, 203
SduI GDGCHC 1 cut(s) 43
SetI ASST 3 cut(s) 9, 36, 158
SfaNI GCATC 1 cut(s) 267
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 139
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 1 cut(s) 151
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 3 cut(s) 14, 19, 201
TaqI TCGA 3 cut(s) 29, 166, 275
TasI AATT 1 cut(s) 139
TfiI GAWTC 2 cut(s) 64, 244
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspGWI ACGGA 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.