Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002681

Physical Location & Seq

Genomic Coordinates Forward (+)

71542638 .. 71544297

Gene Structure 1660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00134080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAGGCAATGTCGACGGAGCCATCGGATTACAAGCCCTACACCCTGTTCGAAACCCTAACCGGCCACAAGAGCGCCATCTCCGGCGTCAAATTCTCCTCCGACGGCCGCCTCCTGGGCTCCTCCTCCGCCGACAAAACCATCCGCACCTACTCCCTCTCCTCCTCCTCCGACTCCCCAGCTCCGACCATCACCCCCGCCCAGACCTTCGAAGGCCACGACCAGGGCGTCTCGGACCTCGCGTTCTCCGCCGACTCCCAGTTCATGGTCTCGGCCTCCGACGACAAAACCCTCCGCCTGTGGGACGTGGAAAGCGGCGACCTCATCAAAACCCTCCGCGGGCACACCAACTACGTCTTCTGCGCCAACTTCAATCCCCAGTCCAACATGATCGTCTCCGGCTCGTTCGACGAAACGGTGCGTATTTGGGATGTGAAGACGGGAAAGTGCCTCAAGGTGTTGCCGGCTCACTCCGATCCCGTCACGGCCGTTGATTTCAACCGGGACGGCTCGATTATCGTTTCGAGTAGCTACGATGGGCTGTGTAGGACCTGGGATGCTTCCACTGGGCATTGCACCAAGACTTTGATTGACGATGAGAATCCGCCCGTTTCGTTTGTCAAGTTCTCGCCTAATGGCAAGTTCATTCTTGTTGGCACTTTGGATAATACTCTGAGGCTTTGGAACTTTCAGACTGGCAAATGTCTAAAGACTTACACAGGCCACAAGAGTTCAAAATTCTGCATTTCTTCCACCTTTTCTGTGACAAATGGGAAATACATTGTAAGCGGTTCTGAAGATCATTGTTTATACTTGTGGGAATTGCAAAGCAGGAAAATAGTTCAGAAATTGGAAGGTCACACGGATACTGTTATATCAGTTTCATGTCACCCTGAAAAGAACATAATTGCATCTGGTGCACTTGGGAATGATAAGACCGTGAAGATCTGGACTCAGGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000123 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0005929 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009987 GO:0010228 GO:0015630 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022008 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030182 GO:0031175 GO:0031248 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034708 GO:0034968 GO:0035097 GO:0036064 GO:0036211 GO:0042393 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0044665 GO:0044782 GO:0048188 GO:0048468 GO:0048608 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051276 GO:0051568 GO:0060271 GO:0061458 GO:0070013 GO:0070925 GO:0071339 GO:0071704 GO:0071840 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

321

Amino Acids

35.19

Weight (kDa)

5.98

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_MABP1-WDR62_2nd	PF24782	13 - 185	5.4e-19	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_1st	PF25173	15 - 168	6.3e-33	WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	16 - 107	5.5e-09	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	16 - 111	5.8e-14	Prp19 WD40 domain
WD40	PF00400	18 - 51	3.9e-07	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	19 - 111	6.3e-12	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	19 - 318	1.2e-140	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	19 - 191	7.2e-22	TEP-1 second beta-propeller
EIF3I	PF24805	20 - 112	1.7e-10	EIF3I
Beta-prop_THOC3	PF25174	23 - 305	6.5e-64	THOC3 beta-propeller domain
Beta-prop_WDR41	PF25178	64 - 154	2.1e-09	WDR41
WD40	PF00400	66 - 102	7e-12	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	67 - 199	1.3e-34	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	68 - 111	9.6e-09	WDR36/Utp21 second beta-propeller domain
WDR55	PF24796	68 - 317	1.4e-25	WDR55
Beta-prop_WDR3_2nd	PF25172	68 - 187	4.9e-21	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	69 - 143	3.3e-06	WDR36/Utp21 first beta-propeller
EIF3I	PF24805	70 - 155	6.2e-16	EIF3I
WD40_Gbeta	PF25391	70 - 183	4.4e-16	G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_1st	PF24780	71 - 176	4.7e-11	MABP1/WDR62 first WD40 domain
Beta-prop_EML	PF23409	72 - 133	3.7e-07	Echinoderm microtubule-associated protein first beta-propeller
WD40_CDC20-Fz	PF24807	74 - 189	1.7e-17	CDC20/Fizzy WD40 domain
Beta-prop_IFT122_1st	PF23381	75 - 177	1.9e-09	IFT122 first beta-propeller
WDR90_beta-prop_4th	PF23342	77 - 207	9.5e-12	WDR90, 4th beta-propeller
WD40_WDHD1_1st	PF24817	77 - 154	6.4e-16	WDHD1 first WD40 domain
NBCH_WD40	PF20426	78 - 149	2.9e-06	Neurobeachin beta propeller domain
Beta-prop_WDR75_1st	PF23869	82 - 146	1.2e-07	WD repeat-containing protein 75 first beta-propeller
Beta-prop_SCAP	PF24017	84 - 190	2.8e-10	SCAP Beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	89 - 192	2.4e-10	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	92 - 230	3.7e-14	WDR36/Utp21 first beta-propeller
WD40_Prp19	PF24814	100 - 275	2.6e-33	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	102 - 151	2.1e-06	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	107 - 144	1.2e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	108 - 195	3.2e-14	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	112 - 227	8.2e-17	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	124 - 284	3.6e-21	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR19_1st	PF23389	126 - 281	1.3e-06	WDR19 first beta-propeller
Beta-prop_EML	PF23409	131 - 224	8.3e-07	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	144 - 216	4.3e-07	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	148 - 186	2.2e-10	WD domain, G-beta repeat
Beta-prop_Aladin	PF25460	151 - 279	7e-10	Aladin seven-bladed propeller
WD40_WDHD1_1st	PF24817	153 - 196	3.8e-06	WDHD1 first WD40 domain
EIF3I	PF24805	154 - 248	4.8e-10	EIF3I
WD40_Gbeta	PF25391	154 - 277	3.5e-13	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st	PF25171	174 - 318	1e-10	WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz	PF24807	184 - 319	5.4e-21	CDC20/Fizzy WD40 domain
WD40	PF00400	191 - 229	1.2e-06	WD domain, G-beta repeat
Beta-prop_NWD2_C	PF23586	197 - 306	6.1e-06	NWD2 C-terminal beta-propeller
Beta-prop_TEP1_2nd	PF25047	198 - 319	2.4e-11	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	199 - 318	5.8e-22	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	201 - 247	1.6e-06	WDHD1 first WD40 domain
EIF3I	PF24805	204 - 294	7.8e-08	EIF3I
Beta-prop_WDR3_2nd	PF25172	204 - 318	3e-13	WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	206 - 275	1.3e-07	MABP1/WDR62 second WD40 domain
Beta-prop_ACSF4	PF13570	209 - 308	9.9e-07	Beta-alanine-activating enzyme, beta-propeller
Beta-prop_EML	PF23409	224 - 306	1e-08	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	233 - 273	1.9e-06	WD domain, G-beta repeat
WD40_Prp19	PF24814	242 - 320	3.1e-11	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	256 - 320	1.2e-07	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	257 - 318	1.8e-11	THOC3 beta-propeller domain
WD40	PF00400	279 - 317	8.9e-08	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49660
fragaria_vesca	FvH4_1g18760
malus_domestica	MD01G1047000.v1.1 MD11G1213300.v1.1 MD15G1305300.v1.1 MD16G1282400.v1.1
prunus_persica	Prupe.6G211800_v2.0.a1
pyrus_communis	pycom01g07290 pycom15g26850 pycom16g25220
rosa_chinensis	RchiOBHm_Chr1g0324081 RchiOBHm_Chr2g0109631 RchiOBHm_Chr4g0412241 RchiOBHm_Chr7g0189251
rosa_laevigata	RLG00000017751 RLG00000018963 RLG00000020091 RLG00000024634 RLG00000029197 RLG00000032867 RLG00000034693 RLG00000035499
rosa_multiflora	Rmu_sc0000595.1_g000009 Rmu_sc0004483.1_g000044 Rmu_sc0010548.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113400 Rroxscaffold_2G00134080
rosa_rugosa	Rorug02G0161400
rosa_samantha	Rh1AG321900 Rh2AG213600 Rh2BG224000 Rh2CG215800 Rh2CG303700 Rh2DG219100 Rh5DG065100 Rh5DG130500 Rh7DG103300
rosa_wichuraiana	Rw1G015840 Rw2G032920 Rw2G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	14
AccII	CGCG	2 cut(s)	242, 339
AclWI	GGATC	1 cut(s)	470
AcoI	YGGCCR	3 cut(s)	64, 106, 486
AcsI	RAATTY	2 cut(s)	92, 737
AcuI	CTGAAG	1 cut(s)	816
AcyI	GRCGYC	2 cut(s)	87, 228
AfiI	CCNNNNNNNGG	5 cut(s)	115, 223, 265, 301, 339
AgsI	TTSAA	3 cut(s)	373, 499, 735
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	3 cut(s)	114, 222, 551
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	2 cut(s)	182, 531
AluI	AGCT	2 cut(s)	182, 531
Alw21I	GWGCWC	1 cut(s)	922
Alw26I	GTCTC	3 cut(s)	235, 274, 400
Alw44I	GTGCAC	1 cut(s)	918
AlwI	GGATC	1 cut(s)	470
AoxI	GGCC	6 cut(s)	64, 106, 214, 273, 486, 721
ApaLI	GTGCAC	1 cut(s)	918
ApoI	RAATTY	2 cut(s)	92, 737
AspLEI	GCGC	2 cut(s)	77, 365
AspS9I	GGNCC	2 cut(s)	235, 549
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	2 cut(s)	184, 881
AsuII	TTCGAA	2 cut(s)	51, 210
AvaII	GGWCC	2 cut(s)	235, 549
BaeGI	GKGCMC	2 cut(s)	345, 922
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	349, 443
Bbv12I	GWGCWC	1 cut(s)	922
BccI	CCATC	5 cut(s)	31, 86, 149, 197, 530
BceAI	ACGGC	4 cut(s)	121, 473, 501, 523
BciT130I	CCWGG	3 cut(s)	116, 224, 553
BciVI	GTATCC	1 cut(s)	859
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	3 cut(s)	235, 274, 400
BfoI	RGCGCY	1 cut(s)	78
BfuI	GTATCC	1 cut(s)	859
BglI	GCCNNNNNGGC	1 cut(s)	117
BglII	AGATCT	1 cut(s)	945
BisI	GCNGC	2 cut(s)	109, 316
BlsI	GCNGC	2 cut(s)	110, 317
Bme1390I	CCNGG	4 cut(s)	116, 224, 503, 553
Bme18I	GGWCC	2 cut(s)	235, 549
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	235, 549
BmiI	GGNNCC	2 cut(s)	21, 121
BmrFI	CCNGG	4 cut(s)	116, 224, 503, 553
BmrI	ACTGGG	3 cut(s)	253, 373, 576
BmsI	GCATC	2 cut(s)	547, 920
BmuI	ACTGGG	3 cut(s)	253, 373, 576
BpiI	GAAGAC	2 cut(s)	349, 443
Bpu14I	TTCGAA	2 cut(s)	51, 210
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	600
BsaHI	GRCGYC	2 cut(s)	87, 228
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	4 cut(s)	115, 223, 337, 552
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 143, 173
Bsc4I	CCNNNNNNNGG	5 cut(s)	115, 223, 265, 301, 339
Bse118I	RCCGGY	2 cut(s)	62, 463
Bse1I	ACTGG	4 cut(s)	259, 379, 571, 700
Bse3DI	GCAATG	2 cut(s)	15, 571
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	3 cut(s)	116, 224, 553
BseDI	CCNNGG	4 cut(s)	115, 223, 337, 552
BseGI	GGATG	3 cut(s)	141, 436, 562
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	5 cut(s)	115, 223, 265, 301, 339
BseMI	GCAATG	2 cut(s)	15, 571
BseMII	CTCAG	1 cut(s)	665
BseNI	ACTGG	4 cut(s)	259, 379, 571, 700
BseRI	GAGGAG	6 cut(s)	88, 112, 115, 151, 154, 157
BseSI	GKGCMC	2 cut(s)	345, 922
BseX3I	CGGCCG	2 cut(s)	106, 486
BseYI	CCCAGC	1 cut(s)	178
Bsh1236I	CGCG	2 cut(s)	242, 339
Bsh1285I	CGRYCG	2 cut(s)	109, 489
BshFI	GGCC	6 cut(s)	66, 108, 216, 275, 488, 723
BsiEI	CGRYCG	2 cut(s)	109, 489
BsiHKAI	GWGCWC	1 cut(s)	922
BsiSI	CCGG	5 cut(s)	63, 84, 399, 464, 502
BslFI	GGGAC	2 cut(s)	317, 518
BslI	CCNNNNNNNGG	5 cut(s)	115, 223, 265, 301, 339
BsmAI	GTCTC	3 cut(s)	235, 274, 400
BsmBI	CGTCTC	2 cut(s)	235, 400
BsmFI	GGGAC	2 cut(s)	317, 518
BsnI	GGCC	6 cut(s)	66, 108, 216, 275, 488, 723
Bso31I	GGTCTC	1 cut(s)	274
Bsp119I	TTCGAA	2 cut(s)	51, 210
Bsp1286I	GDGCHC	3 cut(s)	122, 345, 922
Bsp143I	GATC	4 cut(s)	390, 475, 799, 945
BspANI	GGCC	6 cut(s)	66, 108, 216, 275, 488, 723
BspCNI	CTCAG	1 cut(s)	666
BspFNI	CGCG	2 cut(s)	242, 339
BspLI	GGNNCC	2 cut(s)	21, 121
BspPI	GGATC	1 cut(s)	470
BspT104I	TTCGAA	2 cut(s)	51, 210
BspTNI	GGTCTC	1 cut(s)	274
BsrDI	GCAATG	2 cut(s)	15, 571
BsrFI	RCCGGY	2 cut(s)	62, 463
BsrI	ACTGG	4 cut(s)	259, 379, 571, 700
BssAI	RCCGGY	2 cut(s)	62, 463
BssECI	CCNNGG	4 cut(s)	115, 223, 337, 552
BssMI	GATC	4 cut(s)	390, 475, 799, 945
BssNI	GRCGYC	2 cut(s)	87, 228
Bst2UI	CCWGG	3 cut(s)	116, 224, 553
Bst4CI	ACNGT	3 cut(s)	418, 871, 940
BstACI	GRCGYC	2 cut(s)	87, 228
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstBI	TTCGAA	2 cut(s)	51, 210
BstC8I	GCNNGC	2 cut(s)	341, 465
BstDEI	CTNAG	2 cut(s)	674, 954
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	3 cut(s)	141, 436, 562
BstFNI	CGCG	2 cut(s)	242, 339
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	77, 365
BstKTI	GATC	4 cut(s)	393, 478, 802, 948
BstMAI	GTCTC	3 cut(s)	235, 274, 400
BstMBI	GATC	4 cut(s)	390, 475, 799, 945
BstMCI	CGRYCG	2 cut(s)	109, 489
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 117, 248, 917
BstNI	CCWGG	3 cut(s)	116, 224, 553
BstSCI	CCNGG	4 cut(s)	114, 222, 501, 551
BstSLI	GKGCMC	2 cut(s)	345, 922
BstUI	CGCG	2 cut(s)	242, 339
BstV2I	GAAGAC	2 cut(s)	349, 443
BstX2I	RGATCY	1 cut(s)	945
BstYI	RGATCY	1 cut(s)	945
BstZI	CGGCCG	2 cut(s)	106, 486
BsuI	GTATCC	1 cut(s)	859
BsuRI	GGCC	6 cut(s)	66, 108, 216, 275, 488, 723
BtgI	CCRYGG	1 cut(s)	337
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	3 cut(s)	141, 436, 562
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	2 cut(s)	341, 465
CfoI	GCGC	2 cut(s)	77, 365
Cfr10I	RCCGGY	2 cut(s)	62, 463
Cfr13I	GGNCC	2 cut(s)	235, 549
Cfr42I	CCGCGG	1 cut(s)	340
CseI	GACGC	2 cut(s)	76, 217
CviAII	CATG	3 cut(s)	265, 388, 885
DdeI	CTNAG	2 cut(s)	674, 954
DpnI	GATC	4 cut(s)	392, 477, 801, 947
DpnII	GATC	4 cut(s)	390, 475, 799, 945
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	3 cut(s)	64, 106, 486
EagI	CGGCCG	2 cut(s)	106, 486
EciI	GGCGGA	4 cut(s)	118, 238, 284, 594
EclXI	CGGCCG	2 cut(s)	106, 486
Eco24I	GRGCYC	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	274
Eco47I	GGWCC	2 cut(s)	235, 549
Eco52I	CGGCCG	2 cut(s)	106, 486
Eco57I	CTGAAG	1 cut(s)	816
EcoO109I	RGGNCCY	1 cut(s)	549
EcoRII	CCWGG	3 cut(s)	114, 222, 551
EcoT38I	GRGCYC	1 cut(s)	122
Esp3I	CGTCTC	2 cut(s)	235, 400
FaeI	CATG	3 cut(s)	268, 391, 888
FaiI	YATR	6 cut(s)	266, 389, 811, 875, 886, 905
FaqI	GGGAC	2 cut(s)	317, 518
FatI	CATG	3 cut(s)	264, 387, 884
FauI	CCCGC	2 cut(s)	205, 332
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	109, 316
FokI	GGATG	3 cut(s)	128, 443, 569
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	109, 316
GlaI	GCGC	2 cut(s)	76, 364
GluI	GCNGC	2 cut(s)	109, 316
GsaI	CCCAGC	1 cut(s)	182
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	6 cut(s)	66, 108, 216, 275, 488, 723
HapII	CCGG	5 cut(s)	63, 84, 399, 464, 502
HgaI	GACGC	2 cut(s)	76, 217
HhaI	GCGC	2 cut(s)	77, 365
Hin1I	GRCGYC	2 cut(s)	87, 228
Hin1II	CATG	3 cut(s)	268, 391, 888
Hin6I	GCGC	2 cut(s)	75, 363
HinP1I	GCGC	2 cut(s)	75, 363
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	4 cut(s)	173, 254, 601, 952
HpaII	CCGG	5 cut(s)	63, 84, 399, 464, 502
HphI	GGTGA	2 cut(s)	184, 881
Hpy166II	GTNNAC	2 cut(s)	15, 920
Hpy188III	TCNNGA	2 cut(s)	949, 956
Hpy8I	GTNNAC	2 cut(s)	15, 920
Hpy99I	CGWCG	4 cut(s)	19, 107, 284, 413
HpyAV	CCTTC	3 cut(s)	206, 217, 848
HpyCH4III	ACNGT	3 cut(s)	418, 871, 940
HpyCH4IV	ACGT	2 cut(s)	306, 354
HpyCH4V	TGCA	5 cut(s)	576, 744, 826, 911, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 117, 248, 917
HpyF3I	CTNAG	2 cut(s)	674, 954
HpySE526I	ACGT	2 cut(s)	306, 354
Hsp92I	GRCGYC	2 cut(s)	87, 228
Hsp92II	CATG	3 cut(s)	268, 391, 888
HspAI	GCGC	2 cut(s)	75, 363
KroI	GCCGGC	1 cut(s)	463
KroNI	GCCGGC	1 cut(s)	465
KspI	CCGCGG	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	390, 475, 799, 945
LmnI	GCTCC	3 cut(s)	19, 125, 187
LweI	GCATC	2 cut(s)	547, 920
MaeII	ACGT	2 cut(s)	306, 354
MaeIII	GTNAC	4 cut(s)	481, 763, 857, 887
MalI	GATC	4 cut(s)	392, 477, 801, 947
MboI	GATC	4 cut(s)	390, 475, 799, 945
MboII	GAAGA	5 cut(s)	349, 448, 741, 809, 955
MflI	RGATCY	1 cut(s)	945
MhlI	GDGCHC	3 cut(s)	122, 345, 922
MluCI	AATT	5 cut(s)	92, 737, 821, 848, 906
MlyI	GAGTC	3 cut(s)	167, 248, 946
MmeI	TCCRAC	5 cut(s)	126, 195, 209, 303, 408
MroNI	GCCGGC	1 cut(s)	463
MspA1I	CMGCKG	1 cut(s)	339
MspI	CCGG	5 cut(s)	63, 84, 399, 464, 502
MspR9I	CCNGG	4 cut(s)	116, 224, 503, 553
MvaI	CCWGG	3 cut(s)	116, 224, 553
MvnI	CGCG	2 cut(s)	242, 339
MwoI	GCNNNNNNNGC	4 cut(s)	72, 117, 248, 917
NaeI	GCCGGC	1 cut(s)	465
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	4 cut(s)	390, 475, 799, 945
NgoMIV	GCCGGC	1 cut(s)	463
NlaIII	CATG	3 cut(s)	268, 391, 888
NlaIV	GGNNCC	2 cut(s)	21, 121
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	4 cut(s)	481, 763, 857, 887
NspV	TTCGAA	2 cut(s)	51, 210
PcsI	WCGNNNNNNNCGW	3 cut(s)	216, 225, 239
PdiI	GCCGGC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	601
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	110, 317
PleI	GAGTC	3 cut(s)	167, 248, 946
PpsI	GAGTC	3 cut(s)	167, 248, 946
PpuMI	RGGWCCY	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	549
Psp6I	CCWGG	3 cut(s)	114, 222, 551
PspFI	CCCAGC	1 cut(s)	178
PspGI	CCWGG	3 cut(s)	114, 222, 551
PspN4I	GGNNCC	2 cut(s)	21, 121
PspPI	GGNCC	2 cut(s)	235, 549
PspPPI	RGGWCCY	1 cut(s)	549
PsuI	RGATCY	1 cut(s)	945
SacII	CCGCGG	1 cut(s)	340
SalI	GTCGAC	1 cut(s)	13
SatI	GCNGC	2 cut(s)	109, 316
Sau3AI	GATC	4 cut(s)	390, 475, 799, 945
Sau96I	GGNCC	2 cut(s)	235, 549
SchI	GAGTC	3 cut(s)	167, 248, 946
ScrFI	CCNGG	4 cut(s)	116, 224, 503, 553
SduI	GDGCHC	3 cut(s)	122, 345, 922
SfaNI	GCATC	2 cut(s)	547, 920
Sfr303I	CCGCGG	1 cut(s)	340
SfuI	TTCGAA	2 cut(s)	51, 210
SgrBI	CCGCGG	1 cut(s)	340
SinI	GGWCC	2 cut(s)	235, 549
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	5 cut(s)	92, 737, 821, 848, 906
StyD4I	CCNGG	4 cut(s)	114, 222, 501, 551
TaaI	ACNGT	3 cut(s)	418, 871, 940
TaiI	ACGT	2 cut(s)	309, 357
TaqI	TCGA	6 cut(s)	14, 51, 210, 408, 512, 524
TasI	AATT	5 cut(s)	92, 737, 821, 848, 906
TauI	GCSGC	2 cut(s)	111, 318
TfiI	GAWTC	1 cut(s)	601
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	4 cut(s)	481, 763, 857, 887
Tsp45I	GTSAC	4 cut(s)	481, 763, 857, 887
TspDTI	ATGAA	3 cut(s)	253, 634, 873
TspGWI	ACGGA	2 cut(s)	32, 878
TspRI	CASTG	1 cut(s)	571
Van91I	CCANNNNNTGG	1 cut(s)	265
VneI	GTGCAC	1 cut(s)	918
VpaK11BI	GGWCC	2 cut(s)	235, 549
XapI	RAATTY	2 cut(s)	92, 737
XmiI	GTMKAC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.