Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002681

Physical Location & Seq

Genomic Coordinates Forward (+)

5562924 .. 5563481

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG065100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGACCTGCCCAAGCCTGGCCAATCGGACCTCCGTGGCCCTACGACGCCATTTGATTTGATTCTCAGATCCCTCACCAGTCGGGGATTTGACAATCCAGATTTGTCTTTTTGTATTTGTTGTGATCTTGGTCTAAATTGGTTGTGGCAGAGGTCGGGTAATCGATCCAGATTTGGATTAATGTTGTTTGACGTTTCCCAGGCTATGAGGATCGGAGTTAGGGCCTTGATTGGTGGTGGGATGCGACGGCGACCGGGTTTTGGTTTTGAACTACAGACGGCTTTTTTTCTAGAAGATGTGGCACAATCGGGACCGTCACTTTTTTCTGGAAGATGCAATGGCTTCGGGGACGATTTTGAACTGCAGACGGCGACGAGGTTTTGGTTTCGTGGTCTGACTTTGTACACGAGATCGGTCTCGATTGTGAATTGTTTGGATTGGTTAGTGTGCTGCATCTCTATTGCCGTCAATGGTGATGGTAATATCGATGGCGTTTTACATGTCCGGTGTTCTGGGTATGCATTGGGTTTTCTGGAGGGTCGGCGGTGGAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.72

Weight (kDa)

8.74

Isoelectric Point (pI)

58.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49660
fragaria_vesca	FvH4_1g18760
malus_domestica	MD01G1047000.v1.1 MD11G1213300.v1.1 MD15G1305300.v1.1 MD16G1282400.v1.1
prunus_persica	Prupe.6G211800_v2.0.a1
pyrus_communis	pycom01g07290 pycom15g26850 pycom16g25220
rosa_chinensis	RchiOBHm_Chr1g0324081 RchiOBHm_Chr2g0109631 RchiOBHm_Chr4g0412241 RchiOBHm_Chr7g0189251
rosa_laevigata	RLG00000017751 RLG00000018963 RLG00000020091 RLG00000024634 RLG00000029197 RLG00000032867 RLG00000034693 RLG00000035499
rosa_multiflora	Rmu_sc0000595.1_g000009 Rmu_sc0004483.1_g000044 Rmu_sc0010548.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113400 Rroxscaffold_2G00134080
rosa_rugosa	Rorug02G0161400
rosa_samantha	Rh1AG321900 Rh2AG213600 Rh2BG224000 Rh2CG215800 Rh2CG303700 Rh2DG219100 Rh5DG065100 Rh5DG130500 Rh7DG103300
rosa_wichuraiana	Rw1G015840 Rw2G032920 Rw2G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	15
AciI	CCGC	1 cut(s)	544
AclWI	GGATC	3 cut(s)	63, 159, 218
AcoI	YGGCCR	1 cut(s)	19
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	2 cut(s)	17, 260
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	2 cut(s)	269, 359
AjnI	CCWGG	2 cut(s)	16, 198
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	3 cut(s)	63, 159, 218
AoxI	GGCC	3 cut(s)	19, 37, 222
ApeKI	GCWGC	1 cut(s)	450
AseI	ATTAAT	1 cut(s)	179
AspS9I	GGNCC	5 cut(s)	4, 28, 38, 222, 311
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	67, 485
AvaII	GGWCC	3 cut(s)	4, 28, 311
BalI	TGGCCA	1 cut(s)	21
BauI	CACGAG	1 cut(s)	406
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	2 cut(s)	470, 482
BceAI	ACGGC	4 cut(s)	263, 294, 384, 449
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	2 cut(s)	18, 200
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	2 cut(s)	272, 362
BfuAI	ACCTGC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	451
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	3 cut(s)	18, 200, 255
Bme18I	GGWCC	3 cut(s)	4, 28, 311
BmgT120I	GGNCC	5 cut(s)	4, 28, 38, 222, 311
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	3 cut(s)	18, 200, 255
BmsI	GCATC	3 cut(s)	231, 323, 462
BpmI	CTGGAG	1 cut(s)	554
BpuMI	CCSGG	1 cut(s)	255
Bsa29I	ATCGAT	2 cut(s)	163, 486
BsaHI	GRCGYC	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	421
BsaJI	CCNNGG	2 cut(s)	34, 198
BsaWI	WCCGGW	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 260
Bse1I	ACTGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	2 cut(s)	18, 200
BseCI	ATCGAT	2 cut(s)	163, 486
BseDI	CCNNGG	2 cut(s)	34, 198
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	17, 260
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	437
Bsh1285I	CGRYCG	1 cut(s)	254
BshFI	GGCC	3 cut(s)	21, 39, 224
BshVI	ATCGAT	2 cut(s)	163, 486
BsiEI	CGRYCG	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	254, 505
BslFI	GGGAC	2 cut(s)	324, 362
BslI	CCNNNNNNNGG	2 cut(s)	17, 260
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	2 cut(s)	324, 362
BsnI	GGCC	3 cut(s)	21, 39, 224
Bso31I	GGTCTC	1 cut(s)	421
Bsp1407I	TGTACA	1 cut(s)	402
Bsp143I	GATC	5 cut(s)	68, 124, 164, 210, 410
BspACI	CCGC	1 cut(s)	544
BspANI	GGCC	3 cut(s)	21, 39, 224
BspCNI	CTCAG	1 cut(s)	78
BspDI	ATCGAT	2 cut(s)	163, 486
BspLI	GGNNCC	1 cut(s)	312
BspMAI	CTGCAG	1 cut(s)	366
BspMI	ACCTGC	1 cut(s)	15
BspPI	GGATC	3 cut(s)	63, 159, 218
BspTNI	GGTCTC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	343
BsrGI	TGTACA	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	34, 198
BssMI	GATC	5 cut(s)	68, 124, 164, 210, 410
BssNI	GRCGYC	1 cut(s)	47
BssSI	CACGAG	1 cut(s)	406
Bst2BI	CACGAG	1 cut(s)	406
Bst2UI	CCWGG	2 cut(s)	18, 200
Bst4CI	ACNGT	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	47
BstAUI	TGTACA	1 cut(s)	402
BstDEI	CTNAG	1 cut(s)	65
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	5 cut(s)	71, 127, 167, 213, 413
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	5 cut(s)	68, 124, 164, 210, 410
BstMCI	CGRYCG	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	18, 200
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	3 cut(s)	16, 198, 253
BstSFI	CTRYAG	2 cut(s)	272, 362
BstV1I	GCAGC	1 cut(s)	437
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
Bsu15I	ATCGAT	2 cut(s)	163, 486
BsuRI	GGCC	3 cut(s)	21, 39, 224
BsuTUI	ATCGAT	2 cut(s)	163, 486
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	15
Cfr13I	GGNCC	5 cut(s)	4, 28, 38, 222, 311
ClaI	ATCGAT	2 cut(s)	163, 486
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	1 cut(s)	500
CviJI	RGCY	7 cut(s)	16, 21, 39, 203, 224, 281, 342
CviKI_1	RGCY	7 cut(s)	16, 21, 39, 203, 224, 281, 342
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	5 cut(s)	70, 126, 166, 212, 412
DpnII	GATC	5 cut(s)	68, 124, 164, 210, 410
EaeI	YGGCCR	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	421
Eco47I	GGWCC	3 cut(s)	4, 28, 311
EcoO109I	RGGNCCY	1 cut(s)	222
EcoRII	CCWGG	2 cut(s)	16, 198
EcoT22I	ATGCAT	1 cut(s)	523
FaeI	CATG	1 cut(s)	503
FaiI	YATR	3 cut(s)	206, 501, 519
FaqI	GGGAC	2 cut(s)	324, 362
FatI	CATG	1 cut(s)	499
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	253
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	1 cut(s)	451
GsuI	CTGGAG	1 cut(s)	554
HaeIII	GGCC	3 cut(s)	21, 39, 224
HapII	CCGG	2 cut(s)	254, 505
HgaI	GACGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	503
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	2 cut(s)	254, 505
HphI	GGTGA	2 cut(s)	67, 485
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	4 cut(s)	28, 68, 215, 396
Hpy188III	TCNNGA	7 cut(s)	98, 168, 290, 309, 327, 418, 533
Hpy8I	GTNNAC	1 cut(s)	405
Hpy99I	CGWCG	3 cut(s)	49, 249, 376
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	4 cut(s)	336, 364, 453, 521
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	503
Kzo9I	GATC	5 cut(s)	68, 124, 164, 210, 410
Lsp1109I	GCAGC	1 cut(s)	437
LweI	GCATC	3 cut(s)	231, 323, 462
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	315
MalI	GATC	5 cut(s)	70, 126, 166, 212, 412
MboI	GATC	5 cut(s)	68, 124, 164, 210, 410
MboII	GAAGA	2 cut(s)	305, 342
MflI	RGATCY	1 cut(s)	68
MlsI	TGGCCA	1 cut(s)	21
MluCI	AATT	2 cut(s)	136, 427
MluNI	TGGCCA	1 cut(s)	21
MnlI	CCTC	7 cut(s)	41, 83, 144, 201, 369, 529, 543
Mox20I	TGGCCA	1 cut(s)	21
Mph1103I	ATGCAT	1 cut(s)	523
MscI	TGGCCA	1 cut(s)	21
MseI	TTAA	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	21
MspI	CCGG	2 cut(s)	254, 505
MspR9I	CCNGG	3 cut(s)	18, 200, 255
MvaI	CCWGG	2 cut(s)	18, 200
NciI	CCSGG	1 cut(s)	255
NdeII	GATC	5 cut(s)	68, 124, 164, 210, 410
NlaIII	CATG	1 cut(s)	503
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	315
NsiI	ATGCAT	1 cut(s)	523
NspI	RCATGY	1 cut(s)	503
PciI	ACATGT	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	452
PscI	ACATGT	1 cut(s)	499
PshBI	ATTAAT	1 cut(s)	179
Psp6I	CCWGG	2 cut(s)	16, 198
PspGI	CCWGG	2 cut(s)	16, 198
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	5 cut(s)	4, 28, 38, 222, 311
PstI	CTGCAG	1 cut(s)	366
PsuI	RGATCY	1 cut(s)	68
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	5 cut(s)	68, 124, 164, 210, 410
Sau96I	GGNCC	5 cut(s)	4, 28, 38, 222, 311
ScrFI	CCNGG	3 cut(s)	18, 200, 255
SetI	ASST	5 cut(s)	9, 33, 155, 195, 380
SfaNI	GCATC	3 cut(s)	231, 323, 462
SfcI	CTRYAG	2 cut(s)	272, 362
SinI	GGWCC	3 cut(s)	4, 28, 311
Sse9I	AATT	2 cut(s)	136, 427
SsiI	CCGC	1 cut(s)	544
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	3 cut(s)	16, 198, 253
TaaI	ACNGT	1 cut(s)	315
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	3 cut(s)	163, 419, 486
TaqII	GACCGA	1 cut(s)	403
TasI	AATT	2 cut(s)	136, 427
TatI	WGTACW	1 cut(s)	402
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseFI	GTSAC	1 cut(s)	315
TseI	GCWGC	1 cut(s)	450
Tsp45I	GTSAC	1 cut(s)	315
TspGWI	ACGGA	1 cut(s)	23
VpaK11BI	GGWCC	3 cut(s)	4, 28, 311
VspI	ATTAAT	1 cut(s)	179
XbaI	TCTAGA	1 cut(s)	289
XceI	RCATGY	1 cut(s)	503
XspI	CTAG	1 cut(s)	290
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.