Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002681

Physical Location & Seq

Genomic Coordinates Reverse (-)

21729262 .. 21731308

Gene Structure 2047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG224000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAGGCAATGTCGACGGAGCCATCGGATTACAAGCCCTACACCCTGTTCGAAACCCTAACCGGCCACAAGAGCGCCATCTCCGGCGTCAAATTCTCCTCGGACGGCCGCCTCCTCGGCTCCTCCTCGGCCGACAAAACCATCCGCACCTACTCCGTCTCCTCGTCGTCGTCCGACTCCCCAGCTCCGAGCATCACCCCCGCCCAGACCTTCGAGGGCCACGACCAGGGCGTCTCGGACCTCGCCTTCTCCGCCGACTCCCGGTTCATGGTCTCGGCCTCCGACGACAAAACCCTCCGCCTCTGGGACGTGGAAACGGGCGACCTCATCAAAACCCTCCGCGGGCACACCAACTACGTCTTCTGCGCCAACTTCAATCCCCAGTCCAACATGATCGTCTCCGGCTCGTTCGACGAAACGGTGCGTATTTGGGATGTCAAGACCGGAAAGTGCCTCAAGGTGTTGCCGGCTCACTCCGACCCCGTCACGGCCGTTGATTTCAATCGGGACGGCTCGATTATCGTTTCGAGTAGCTACGATGGGCTGTGTAGGACCTGGGATGCTTCCACCGGGCATTGCACCAAGACTTTGATTGACGATGAGAATCCCCCGGTTTCGTTTGTCAAGTTCTCCCCTAATGGCAAGTTCATTCTTGTTGGCACTTTGGATAATACTCTGAGGCTTTGGAACTTTCAAACCGGCAAATGTCTAAAGACCTACACAGGCCACAAGAGTTCAAAATTCTGCATTTCTTCCACCTTTTCTGTGACAAATGGGAAATACATTGTAAGCGGTTCTGAAGATCATTGTTTATACTTGTGGGAATTGCAAAGCAGGAAAATAGTTCAGAAATTGGAAGGTCACACTGATACTGTTATATCAGTTTCATGTCACCCTGAAAAGAACATAATTGCATCTGGTGCACTTGGGAATGATAAGACCGTGAAGATCTGGACTCAGGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000123 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0005929 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009987 GO:0010228 GO:0015630 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022008 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030182 GO:0031175 GO:0031248 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034708 GO:0034968 GO:0035097 GO:0036064 GO:0036211 GO:0042393 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0044665 GO:0044782 GO:0048188 GO:0048468 GO:0048608 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051276 GO:0051568 GO:0060271 GO:0061458 GO:0070013 GO:0070925 GO:0071339 GO:0071704 GO:0071840 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

322

Amino Acids

35.29

Weight (kDa)

6.14

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_MABP1-WDR62_2nd	PF24782	13 - 186	1.4e-18	MABP1/WDR62 second WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	16 - 107	7.3e-09	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	16 - 112	8.1e-14	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	16 - 84	1e-05	CDC20/Fizzy WD40 domain
WD40	PF00400	18 - 51	3.9e-07	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	18 - 190	4.1e-23	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	18 - 113	9.1e-16	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	19 - 112	3e-12	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	19 - 319	8.9e-141	WDR5 beta-propeller domain
EIF3I	PF24805	20 - 113	1.2e-10	EIF3I
Beta-prop_THOC3	PF25174	23 - 306	1.4e-63	THOC3 beta-propeller domain
Beta-prop_WDR41	PF25178	38 - 155	4.2e-11	WDR41
WD40	PF00400	67 - 103	8e-12	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	68 - 200	1.1e-34	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	69 - 112	2.4e-09	WDR36/Utp21 second beta-propeller domain
WDR55	PF24796	69 - 318	1.3e-25	WDR55
Beta-prop_WDR3_2nd	PF25172	70 - 189	6e-21	WDR3 second beta-propeller domain
WD40_Gbeta	PF25391	72 - 184	2.3e-16	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	73 - 190	1.1e-17	CDC20/Fizzy WD40 domain
Beta-prop_EML	PF23409	73 - 134	6.5e-07	Echinoderm microtubule-associated protein first beta-propeller
WD40_MABP1-WDR62_1st	PF24780	73 - 177	4.3e-11	MABP1/WDR62 first WD40 domain
Beta-prop_IFT122_1st	PF23381	76 - 178	2.6e-09	IFT122 first beta-propeller
WD40_WDHD1_1st	PF24817	77 - 155	4e-16	WDHD1 first WD40 domain
WDR90_beta-prop_4th	PF23342	78 - 208	2.2e-11	WDR90, 4th beta-propeller
NBCH_WD40	PF20426	81 - 150	4.5e-06	Neurobeachin beta propeller domain
Beta-prop_WDR75_1st	PF23869	83 - 147	1.1e-08	WD repeat-containing protein 75 first beta-propeller
Beta-prop_SCAP	PF24017	87 - 191	2.4e-10	SCAP Beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	87 - 193	4.1e-11	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	93 - 231	1.6e-14	WDR36/Utp21 first beta-propeller
WD40_Prp19	PF24814	101 - 276	3.5e-33	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	103 - 152	8.2e-07	WDR36/Utp21 second beta-propeller domain
EIF3I	PF24805	107 - 156	1.3e-08	EIF3I
WD40	PF00400	108 - 145	1.2e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	110 - 196	4.3e-14	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	113 - 229	6.2e-18	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	118 - 225	6.3e-10	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2	PF23414	125 - 286	3.4e-21	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR19_1st	PF23389	127 - 281	1.5e-06	WDR19 first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	145 - 219	2.4e-07	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	149 - 187	2.2e-10	WD domain, G-beta repeat
Beta-prop_Aladin	PF25460	152 - 283	4.6e-10	Aladin seven-bladed propeller
WD40_WDHD1_1st	PF24817	154 - 197	3.7e-06	WDHD1 first WD40 domain
WD40_Gbeta	PF25391	155 - 278	2e-13	G protein beta WD-40 repeat protein
EIF3I	PF24805	155 - 249	4.8e-10	EIF3I
Beta-prop_WDR36-Utp21_1st	PF25171	175 - 319	1.3e-10	WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz	PF24807	185 - 320	4.5e-21	CDC20/Fizzy WD40 domain
WD40	PF00400	192 - 230	1.2e-06	WD domain, G-beta repeat
Beta-prop_NWD2_C	PF23586	198 - 307	6.1e-06	NWD2 C-terminal beta-propeller
Beta-prop_TEP1_2nd	PF25047	199 - 320	2.5e-11	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	200 - 319	6.7e-22	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	203 - 248	2.2e-06	WDHD1 first WD40 domain
EIF3I	PF24805	204 - 289	1.8e-07	EIF3I
Beta-prop_WDR3_2nd	PF25172	205 - 319	2.9e-13	WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	207 - 276	1.3e-07	MABP1/WDR62 second WD40 domain
Beta-prop_ACSF4	PF13570	210 - 309	1e-06	Beta-alanine-activating enzyme, beta-propeller
Beta-prop_EML	PF23409	225 - 307	9.9e-09	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	234 - 274	1.9e-06	WD domain, G-beta repeat
WD40_Prp19	PF24814	243 - 321	3.1e-11	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	257 - 321	1.1e-07	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	258 - 319	1.6e-11	THOC3 beta-propeller domain
WD40	PF00400	280 - 318	8.9e-08	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49660
fragaria_vesca	FvH4_1g18760
malus_domestica	MD01G1047000.v1.1 MD11G1213300.v1.1 MD15G1305300.v1.1 MD16G1282400.v1.1
prunus_persica	Prupe.6G211800_v2.0.a1
pyrus_communis	pycom01g07290 pycom15g26850 pycom16g25220
rosa_chinensis	RchiOBHm_Chr1g0324081 RchiOBHm_Chr2g0109631 RchiOBHm_Chr4g0412241 RchiOBHm_Chr7g0189251
rosa_laevigata	RLG00000017751 RLG00000018963 RLG00000020091 RLG00000024634 RLG00000029197 RLG00000032867 RLG00000034693 RLG00000035499
rosa_multiflora	Rmu_sc0000595.1_g000009 Rmu_sc0004483.1_g000044 Rmu_sc0010548.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113400 Rroxscaffold_2G00134080
rosa_rugosa	Rorug02G0161400
rosa_samantha	Rh1AG321900 Rh2AG213600 Rh2BG224000 Rh2CG215800 Rh2CG303700 Rh2DG219100 Rh5DG065100 Rh5DG130500 Rh7DG103300
rosa_wichuraiana	Rw1G015840 Rw2G032920 Rw2G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	14
AccII	CGCG	1 cut(s)	342
AciI	CCGC	8 cut(s)	109, 145, 201, 252, 298, 340, 342, 792
AcoI	YGGCCR	4 cut(s)	64, 106, 129, 489
AcsI	RAATTY	2 cut(s)	92, 740
AcuI	CTGAAG	1 cut(s)	819
AcyI	GRCGYC	2 cut(s)	87, 231
AfiI	CCNNNNNNNGG	6 cut(s)	226, 261, 268, 304, 342, 487
AgsI	TTSAA	4 cut(s)	376, 502, 695, 738
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	2 cut(s)	225, 554
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	2 cut(s)	185, 534
AluI	AGCT	2 cut(s)	185, 534
Alw21I	GWGCWC	1 cut(s)	925
Alw26I	GTCTC	4 cut(s)	163, 238, 277, 403
Alw44I	GTGCAC	1 cut(s)	921
AoxI	GGCC	7 cut(s)	64, 106, 129, 217, 276, 489, 724
ApaLI	GTGCAC	1 cut(s)	921
ApoI	RAATTY	2 cut(s)	92, 740
AspLEI	GCGC	2 cut(s)	77, 368
AspS9I	GGNCC	3 cut(s)	217, 238, 552
AsuC2I	CCSGG	3 cut(s)	262, 571, 611
AsuHPI	GGTGA	2 cut(s)	187, 884
AsuII	TTCGAA	1 cut(s)	51
AvaII	GGWCC	2 cut(s)	238, 552
BaeGI	GKGCMC	2 cut(s)	348, 925
BbsI	GAAGAC	1 cut(s)	352
Bbv12I	GWGCWC	1 cut(s)	925
BccI	CCATC	4 cut(s)	31, 86, 149, 533
BceAI	ACGGC	4 cut(s)	121, 476, 504, 526
BciT130I	CCWGG	2 cut(s)	227, 556
BcnI	CCSGG	3 cut(s)	262, 571, 611
BcoDI	GTCTC	4 cut(s)	163, 238, 277, 403
BfoI	RGCGCY	1 cut(s)	78
BglI	GCCNNNNNGGC	1 cut(s)	117
BglII	AGATCT	1 cut(s)	948
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
Bme1390I	CCNGG	5 cut(s)	227, 262, 556, 571, 611
Bme18I	GGWCC	2 cut(s)	238, 552
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	3 cut(s)	217, 238, 552
BmiI	GGNNCC	2 cut(s)	21, 121
BmrFI	CCNGG	5 cut(s)	227, 262, 556, 571, 611
BmrI	ACTGGG	1 cut(s)	376
BmsI	GCATC	3 cut(s)	201, 550, 923
BmuI	ACTGGG	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	352
Bpu14I	TTCGAA	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	3 cut(s)	262, 571, 611
BsaBI	GATNNNNATC	2 cut(s)	501, 603
BsaHI	GRCGYC	2 cut(s)	87, 231
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	7 cut(s)	99, 115, 126, 226, 340, 555, 609
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 143, 173
Bsc4I	CCNNNNNNNGG	6 cut(s)	226, 261, 268, 304, 342, 487
Bse118I	RCCGGY	3 cut(s)	62, 466, 698
Bse1I	ACTGG	1 cut(s)	382
Bse3DI	GCAATG	2 cut(s)	15, 574
Bse8I	GATNNNNATC	2 cut(s)	501, 603
BseBI	CCWGG	2 cut(s)	227, 556
BseDI	CCNNGG	7 cut(s)	99, 115, 126, 226, 340, 555, 609
BseGI	GGATG	3 cut(s)	141, 439, 565
BseJI	GATNNNNATC	2 cut(s)	501, 603
BseLI	CCNNNNNNNGG	6 cut(s)	226, 261, 268, 304, 342, 487
BseMI	GCAATG	2 cut(s)	15, 574
BseMII	CTCAG	1 cut(s)	668
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	5 cut(s)	88, 104, 112, 115, 151
BseSI	GKGCMC	2 cut(s)	348, 925
BseX3I	CGGCCG	3 cut(s)	106, 129, 489
BseYI	CCCAGC	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	342
Bsh1285I	CGRYCG	3 cut(s)	109, 132, 492
BshFI	GGCC	7 cut(s)	66, 108, 131, 219, 278, 491, 726
BsiEI	CGRYCG	3 cut(s)	109, 132, 492
BsiHKAI	GWGCWC	1 cut(s)	925
BsiSI	CCGG	9 cut(s)	63, 84, 262, 402, 444, 467, 570, 611, 699
BslFI	GGGAC	2 cut(s)	320, 521
BslI	CCNNNNNNNGG	6 cut(s)	226, 261, 268, 304, 342, 487
BsmAI	GTCTC	4 cut(s)	163, 238, 277, 403
BsmBI	CGTCTC	3 cut(s)	163, 238, 403
BsmFI	GGGAC	2 cut(s)	320, 521
BsnI	GGCC	7 cut(s)	66, 108, 131, 219, 278, 491, 726
Bso31I	GGTCTC	1 cut(s)	277
Bsp119I	TTCGAA	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	348, 925
Bsp143I	GATC	3 cut(s)	393, 802, 948
BspACI	CCGC	8 cut(s)	109, 145, 201, 252, 298, 340, 342, 792
BspANI	GGCC	7 cut(s)	66, 108, 131, 219, 278, 491, 726
BspCNI	CTCAG	1 cut(s)	669
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	21, 121
BspT104I	TTCGAA	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	277
BsrDI	GCAATG	2 cut(s)	15, 574
BsrFI	RCCGGY	3 cut(s)	62, 466, 698
BsrI	ACTGG	1 cut(s)	382
BssAI	RCCGGY	3 cut(s)	62, 466, 698
BssECI	CCNNGG	7 cut(s)	99, 115, 126, 226, 340, 555, 609
BssMI	GATC	3 cut(s)	393, 802, 948
BssNI	GRCGYC	2 cut(s)	87, 231
Bst2UI	CCWGG	2 cut(s)	227, 556
Bst4CI	ACNGT	3 cut(s)	421, 874, 943
BstACI	GRCGYC	2 cut(s)	87, 231
BstAPI	GCANNNNNTGC	1 cut(s)	920
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	344, 468
BstDEI	CTNAG	2 cut(s)	677, 957
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	3 cut(s)	141, 439, 565
BstFNI	CGCG	1 cut(s)	342
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	77, 368
BstKTI	GATC	3 cut(s)	396, 805, 951
BstMAI	GTCTC	4 cut(s)	163, 238, 277, 403
BstMBI	GATC	3 cut(s)	393, 802, 948
BstMCI	CGRYCG	3 cut(s)	109, 132, 492
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 117, 251, 920
BstNI	CCWGG	2 cut(s)	227, 556
BstSCI	CCNGG	5 cut(s)	225, 260, 554, 569, 609
BstSLI	GKGCMC	2 cut(s)	348, 925
BstUI	CGCG	1 cut(s)	342
BstV2I	GAAGAC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	948
BstYI	RGATCY	1 cut(s)	948
BstZI	CGGCCG	3 cut(s)	106, 129, 489
BsuRI	GGCC	7 cut(s)	66, 108, 131, 219, 278, 491, 726
BtgI	CCRYGG	1 cut(s)	340
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	3 cut(s)	141, 439, 565
BtsIMutI	CAGTG	1 cut(s)	864
Cac8I	GCNNGC	2 cut(s)	344, 468
CfoI	GCGC	2 cut(s)	77, 368
Cfr10I	RCCGGY	3 cut(s)	62, 466, 698
Cfr13I	GGNCC	3 cut(s)	217, 238, 552
Cfr42I	CCGCGG	1 cut(s)	343
CseI	GACGC	2 cut(s)	76, 220
CviAII	CATG	3 cut(s)	268, 391, 888
DdeI	CTNAG	2 cut(s)	677, 957
DpnI	GATC	3 cut(s)	395, 804, 950
DpnII	GATC	3 cut(s)	393, 802, 948
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	4 cut(s)	64, 106, 129, 489
EagI	CGGCCG	3 cut(s)	106, 129, 489
EciI	GGCGGA	2 cut(s)	241, 287
EclXI	CGGCCG	3 cut(s)	106, 129, 489
Eco31I	GGTCTC	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	238, 552
Eco52I	CGGCCG	3 cut(s)	106, 129, 489
Eco57I	CTGAAG	1 cut(s)	819
EcoO109I	RGGNCCY	1 cut(s)	552
EcoRII	CCWGG	2 cut(s)	225, 554
Esp3I	CGTCTC	3 cut(s)	163, 238, 403
FaeI	CATG	3 cut(s)	271, 394, 891
FaiI	YATR	6 cut(s)	269, 392, 814, 878, 889, 908
FaqI	GGGAC	2 cut(s)	320, 521
FatI	CATG	3 cut(s)	267, 390, 887
FauI	CCCGC	2 cut(s)	208, 335
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	3 cut(s)	128, 446, 572
Fsp4HI	GCNGC	1 cut(s)	109
GlaI	GCGC	2 cut(s)	76, 367
GluI	GCNGC	1 cut(s)	109
GsaI	CCCAGC	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	7 cut(s)	66, 108, 131, 219, 278, 491, 726
HapII	CCGG	9 cut(s)	63, 84, 262, 402, 444, 467, 570, 611, 699
HgaI	GACGC	2 cut(s)	76, 220
HhaI	GCGC	2 cut(s)	77, 368
Hin1I	GRCGYC	2 cut(s)	87, 231
Hin1II	CATG	3 cut(s)	271, 394, 891
Hin6I	GCGC	2 cut(s)	75, 366
HinP1I	GCGC	2 cut(s)	75, 366
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	4 cut(s)	176, 257, 604, 955
HpaII	CCGG	9 cut(s)	63, 84, 262, 402, 444, 467, 570, 611, 699
HphI	GGTGA	2 cut(s)	187, 884
Hpy166II	GTNNAC	2 cut(s)	15, 923
Hpy188III	TCNNGA	4 cut(s)	439, 506, 952, 959
Hpy8I	GTNNAC	2 cut(s)	15, 923
Hpy99I	CGWCG	5 cut(s)	19, 169, 172, 287, 416
HpyAV	CCTTC	3 cut(s)	220, 256, 851
HpyCH4III	ACNGT	3 cut(s)	421, 874, 943
HpyCH4IV	ACGT	2 cut(s)	309, 357
HpyCH4V	TGCA	5 cut(s)	579, 747, 829, 914, 923
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 117, 251, 920
HpyF3I	CTNAG	2 cut(s)	677, 957
HpySE526I	ACGT	2 cut(s)	309, 357
Hsp92I	GRCGYC	2 cut(s)	87, 231
Hsp92II	CATG	3 cut(s)	271, 394, 891
HspAI	GCGC	2 cut(s)	75, 366
KroI	GCCGGC	1 cut(s)	466
KroNI	GCCGGC	1 cut(s)	468
KspI	CCGCGG	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	393, 802, 948
LmnI	GCTCC	3 cut(s)	19, 125, 190
LweI	GCATC	3 cut(s)	201, 550, 923
MaeII	ACGT	2 cut(s)	309, 357
MaeIII	GTNAC	4 cut(s)	484, 766, 860, 890
MalI	GATC	3 cut(s)	395, 804, 950
MboI	GATC	3 cut(s)	393, 802, 948
MboII	GAAGA	4 cut(s)	352, 744, 812, 958
MflI	RGATCY	1 cut(s)	948
MhlI	GDGCHC	2 cut(s)	348, 925
MluCI	AATT	5 cut(s)	92, 740, 824, 851, 909
MlyI	GAGTC	3 cut(s)	170, 251, 949
MmeI	TCCRAC	4 cut(s)	198, 306, 411, 501
MroNI	GCCGGC	1 cut(s)	466
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	9 cut(s)	63, 84, 262, 402, 444, 467, 570, 611, 699
MspR9I	CCNGG	5 cut(s)	227, 262, 556, 571, 611
MvaI	CCWGG	2 cut(s)	227, 556
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	4 cut(s)	72, 117, 251, 920
NaeI	GCCGGC	1 cut(s)	468
NciI	CCSGG	3 cut(s)	262, 571, 611
NdeII	GATC	3 cut(s)	393, 802, 948
NgoMIV	GCCGGC	1 cut(s)	466
NlaIII	CATG	3 cut(s)	271, 394, 891
NlaIV	GGNNCC	2 cut(s)	21, 121
NmeAIII	GCCGAG	3 cut(s)	96, 107, 254
NmuCI	GTSAC	4 cut(s)	484, 766, 860, 890
NspV	TTCGAA	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 228
PdiI	GCCGGC	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	604
PflFI	GACNNNGTC	1 cut(s)	482
PkrI	GCNGC	1 cut(s)	110
PleI	GAGTC	3 cut(s)	170, 251, 949
PpsI	GAGTC	3 cut(s)	170, 251, 949
PpuMI	RGGWCCY	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	225, 554
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	2 cut(s)	225, 554
PspN4I	GGNNCC	2 cut(s)	21, 121
PspPI	GGNCC	3 cut(s)	217, 238, 552
PspPPI	RGGWCCY	1 cut(s)	552
PsuI	RGATCY	1 cut(s)	948
PsyI	GACNNNGTC	1 cut(s)	482
SacII	CCGCGG	1 cut(s)	343
SalI	GTCGAC	1 cut(s)	13
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	3 cut(s)	393, 802, 948
Sau96I	GGNCC	3 cut(s)	217, 238, 552
SchI	GAGTC	3 cut(s)	170, 251, 949
ScrFI	CCNGG	5 cut(s)	227, 262, 556, 571, 611
SduI	GDGCHC	2 cut(s)	348, 925
SfaNI	GCATC	3 cut(s)	201, 550, 923
Sfr303I	CCGCGG	1 cut(s)	343
SfuI	TTCGAA	1 cut(s)	51
SgrBI	CCGCGG	1 cut(s)	343
SinI	GGWCC	2 cut(s)	238, 552
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	5 cut(s)	92, 740, 824, 851, 909
SsiI	CCGC	8 cut(s)	109, 145, 201, 252, 298, 340, 342, 792
StyD4I	CCNGG	5 cut(s)	225, 260, 554, 569, 609
TaaI	ACNGT	3 cut(s)	421, 874, 943
TaiI	ACGT	2 cut(s)	312, 360
TaqI	TCGA	6 cut(s)	14, 51, 213, 411, 515, 527
TasI	AATT	5 cut(s)	92, 740, 824, 851, 909
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	604
TscAI	CASTG	1 cut(s)	871
TseFI	GTSAC	4 cut(s)	484, 766, 860, 890
Tsp45I	GTSAC	4 cut(s)	484, 766, 860, 890
TspDTI	ATGAA	3 cut(s)	256, 637, 876
TspGWI	ACGGA	2 cut(s)	32, 145
TspRI	CASTG	1 cut(s)	871
Tth111I	GACNNNGTC	1 cut(s)	482
VneI	GTGCAC	1 cut(s)	921
VpaK11BI	GGWCC	2 cut(s)	238, 552
XapI	RAATTY	2 cut(s)	92, 740
XmiI	GTMKAC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.