Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002681

Physical Location & Seq

Genomic Coordinates Forward (+)

55578278 .. 55594043

Gene Structure 15766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG321900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGGTCCTCAGGAGCGACTTCGGGGAGGGAGAAGGAATTGGCGCCATGGATGAGCAGTAGAAAGATGGCAGAGATCATGATGAGCGGTCCGTCTTGGATCAATGCACCAATCTGCAAAGTTAATTATGGCAGCGCTGGGGCGGTTGGAGGAGGTGGTAGGAAACGACGAACAAGAGAAGACAAAGATTTGTTACTTGCTCAAGCAGGAACTTGGATAGTTGATGATAAAATAGCCATCAAACCTCAGGAGGTTATCATTTGGAATAGACAGCTACAAAAGCGTATGATAGAACAAAACTTAAGCACGGGAGCACACAAGAATACGTTACTCACTGAGAAGCATTGGTGCTCAAGTAGAAGGAGTCATCCAACCACGGTCAACAACAGAAGAACACCCTTCATGCTGATACCACGTCTCCTTAAACAGGAAGCACTTAGGAAAAAACATTCTACTTGGAGGCTCAGGGTTGACCTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.27

Weight (kDa)

10.96

Isoelectric Point (pI)

59.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49660
fragaria_vesca	FvH4_1g18760
malus_domestica	MD01G1047000.v1.1 MD11G1213300.v1.1 MD15G1305300.v1.1 MD16G1282400.v1.1
prunus_persica	Prupe.6G211800_v2.0.a1
pyrus_communis	pycom01g07290 pycom15g26850 pycom16g25220
rosa_chinensis	RchiOBHm_Chr1g0324081 RchiOBHm_Chr2g0109631 RchiOBHm_Chr4g0412241 RchiOBHm_Chr7g0189251
rosa_laevigata	RLG00000017751 RLG00000018963 RLG00000020091 RLG00000024634 RLG00000029197 RLG00000032867 RLG00000034693 RLG00000035499
rosa_multiflora	Rmu_sc0000595.1_g000009 Rmu_sc0004483.1_g000044 Rmu_sc0010548.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113400 Rroxscaffold_2G00134080
rosa_rugosa	Rorug02G0161400
rosa_samantha	Rh1AG321900 Rh2AG213600 Rh2BG224000 Rh2CG215800 Rh2CG303700 Rh2DG219100 Rh5DG065100 Rh5DG130500 Rh7DG103300
rosa_wichuraiana	Rw1G015840 Rw2G032920 Rw2G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	87
AciI	CCGC	2 cut(s)	87, 143
AclWI	GGATC	1 cut(s)	107
AcyI	GRCGYC	1 cut(s)	44
AfeI	AGCGCT	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	427
AflII	CTTAAG	1 cut(s)	301
AjiI	CACGTC	1 cut(s)	416
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
Alw21I	GWGCWC	2 cut(s)	316, 353
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	1 cut(s)	107
Aor51HI	AGCGCT	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	132
AspLEI	GCGC	2 cut(s)	46, 137
AspS9I	GGNCC	2 cut(s)	6, 89
AvaII	GGWCC	2 cut(s)	6, 89
AxyI	CCTNAGG	2 cut(s)	10, 246
BanI	GGYRCC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	2 cut(s)	316, 353
BbvI	GCAGC	1 cut(s)	144
BccI	CCATC	2 cut(s)	61, 245
BcoDI	GTCTC	1 cut(s)	422
BfoI	RGCGCY	2 cut(s)	47, 138
BfrI	CTTAAG	1 cut(s)	301
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
Bme18I	GGWCC	2 cut(s)	6, 89
BmgBI	CACGTC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	6, 89
BmiI	GGNNCC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	464
BpuEI	CTTGAG	2 cut(s)	186, 337
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	47, 375
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse21I	CCTNAGG	2 cut(s)	10, 246
BseDI	CCNNGG	2 cut(s)	47, 375
BseGI	GGATG	2 cut(s)	57, 367
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMII	CTCAG	4 cut(s)	24, 260, 327, 478
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	144
BseYI	CCCAGC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	316, 353
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	422
BsmBI	CGTCTC	1 cut(s)	422
Bsp1286I	GDGCHC	2 cut(s)	316, 353
Bsp143I	GATC	2 cut(s)	75, 99
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	87, 143
BspCNI	CTCAG	4 cut(s)	23, 259, 328, 477
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	43
BspTI	CTTAAG	1 cut(s)	301
BsrBI	CCGCTC	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	47, 375
BssMI	GATC	2 cut(s)	75, 99
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	379
BstACI	GRCGYC	1 cut(s)	44
BstAFI	CTTAAG	1 cut(s)	301
BstDEI	CTNAG	5 cut(s)	10, 246, 336, 437, 464
BstDSI	CCRYGG	2 cut(s)	47, 375
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	2 cut(s)	57, 367
BstH2I	RGCGCY	2 cut(s)	47, 138
BstHHI	GCGC	2 cut(s)	46, 137
BstKTI	GATC	2 cut(s)	78, 102
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	2 cut(s)	75, 99
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	144
BstV2I	GAAGAC	1 cut(s)	186
Bsu36I	CCTNAGG	2 cut(s)	10, 246
BtgI	CCRYGG	2 cut(s)	47, 375
BtrI	CACGTC	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	57, 367
BtsIMutI	CAGTG	1 cut(s)	333
CciI	TCATGA	1 cut(s)	78
CfoI	GCGC	2 cut(s)	46, 137
Cfr13I	GGNCC	2 cut(s)	6, 89
CpoI	CGGWCCG	1 cut(s)	89
CspI	CGGWCCG	1 cut(s)	89
CviAII	CATG	3 cut(s)	48, 79, 403
CviJI	RGCY	3 cut(s)	236, 274, 463
CviKI_1	RGCY	3 cut(s)	236, 274, 463
DdeI	CTNAG	5 cut(s)	10, 246, 336, 437, 464
DinI	GGCGCC	1 cut(s)	45
DpnI	GATC	2 cut(s)	77, 101
DpnII	GATC	2 cut(s)	75, 99
Eco130I	CCWWGG	1 cut(s)	47
Eco47I	GGWCC	2 cut(s)	6, 89
Eco47III	AGCGCT	1 cut(s)	136
Eco81I	CCTNAGG	2 cut(s)	10, 246
EcoNI	CCTNNNNNAGG	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	47
EgeI	GGCGCC	1 cut(s)	45
EheI	GGCGCC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	47
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	3 cut(s)	51, 82, 406
FaiI	YATR	5 cut(s)	49, 80, 129, 287, 404
FatI	CATG	3 cut(s)	47, 78, 402
Fnu4HI	GCNGC	1 cut(s)	133
FokI	GGATG	2 cut(s)	64, 354
Fsp4HI	GCNGC	1 cut(s)	133
GlaI	GCGC	2 cut(s)	45, 136
GluI	GCNGC	1 cut(s)	133
GsaI	CCCAGC	1 cut(s)	141
HaeII	RGCGCY	2 cut(s)	47, 138
HhaI	GCGC	2 cut(s)	46, 137
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	51, 82, 406
Hin6I	GCGC	2 cut(s)	44, 135
HinP1I	GCGC	2 cut(s)	44, 135
HincII	GTYRAC	2 cut(s)	382, 472
HindII	GTYRAC	2 cut(s)	382, 472
HinfI	GANTC	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	382, 472
Hpy188III	TCNNGA	3 cut(s)	12, 79, 248
Hpy8I	GTNNAC	2 cut(s)	382, 472
Hpy99I	CGWCG	1 cut(s)	171
HpyAV	CCTTC	3 cut(s)	28, 354, 409
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	2 cut(s)	326, 415
HpyCH4V	TGCA	2 cut(s)	107, 117
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	5 cut(s)	10, 246, 336, 437, 464
HpySE526I	ACGT	2 cut(s)	326, 415
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	51, 82, 406
HspAI	GCGC	2 cut(s)	44, 135
KasI	GGCGCC	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	75, 99
LmnI	GCTCC	2 cut(s)	14, 311
LpnPI	CCDG	5 cut(s)	123, 192, 233, 413, 451
Lsp1109I	GCAGC	1 cut(s)	144
MaeII	ACGT	2 cut(s)	326, 415
MaeIII	GTNAC	2 cut(s)	192, 327
MalI	GATC	2 cut(s)	77, 101
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	2 cut(s)	75, 99
MboII	GAAGA	2 cut(s)	191, 402
MfeI	CAATTG	1 cut(s)	478
MhlI	GDGCHC	2 cut(s)	316, 353
MluCI	AATT	3 cut(s)	38, 124, 478
Mly113I	GGCGCC	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	2 cut(s)	127, 395
MnlI	CCTC	7 cut(s)	19, 21, 143, 146, 244, 255, 453
MseI	TTAA	3 cut(s)	123, 302, 423
MspCI	CTTAAG	1 cut(s)	301
MunI	CAATTG	1 cut(s)	478
MwoI	GCNNNNNNNGC	1 cut(s)	280
NarI	GGCGCC	1 cut(s)	44
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	75, 99
NlaIII	CATG	3 cut(s)	51, 82, 406
NlaIV	GGNNCC	1 cut(s)	45
PagI	TCATGA	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	1 cut(s)	372
PluTI	GGCGCC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	372
PpuMI	RGGWCCY	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	6
PspFI	CCCAGC	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	6, 89
PspPPI	RGGWCCY	1 cut(s)	6
Rsr2I	CGGWCCG	1 cut(s)	89
RsrII	CGGWCCG	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	123, 302, 423
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	2 cut(s)	75, 99
Sau96I	GGNCC	2 cut(s)	6, 89
SchI	GAGTC	1 cut(s)	373
SduI	GDGCHC	2 cut(s)	316, 353
SetI	ASST	8 cut(s)	8, 157, 247, 255, 276, 329, 418, 477
SfoI	GGCGCC	1 cut(s)	45
SinI	GGWCC	2 cut(s)	6, 89
SmlI	CTYRAG	3 cut(s)	201, 301, 352
SmoI	CTYRAG	3 cut(s)	201, 301, 352
Sse9I	AATT	3 cut(s)	38, 124, 478
SsiI	CCGC	2 cut(s)	87, 143
SspDI	GGCGCC	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	2 cut(s)	329, 418
TasI	AATT	3 cut(s)	38, 124, 478
Tru1I	TTAA	3 cut(s)	123, 302, 423
Tru9I	TTAA	3 cut(s)	123, 302, 423
TscAI	CASTG	1 cut(s)	340
TseI	GCWGC	1 cut(s)	132
TspDTI	ATGAA	1 cut(s)	391
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	340
Vha464I	CTTAAG	1 cut(s)	301
VpaK11BI	GGWCC	2 cut(s)	6, 89
XagI	CCTNNNNNAGG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.