Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004483.1

Orthogroup ID

OG0002681

Physical Location & Seq

Genomic Coordinates Reverse (-)

176774 .. 177580

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004483.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggacctgcttcccaggcctggccaatcggacctccgtggccctacgacgccatttgatgtgattctcagatccctcaccagtcggggatttgacaatccagatttgtctttttgtatttgttgtgatcttggtctgaattggctgtggcagaggtcgggtaaccgatccagatttggattaatgttgtttgatgtttcccaggctgtgaggatcggagttagggccttgattggtagtgggatgagacggcgaccgggttttgacggcgacgaggttttggtttcatggtctgactttgtacacgagatcggtcccgattgtgaattgtttggattggattttgaaagggaaggaaggaactatatggacaaaaccttcgaaggccacgaccagtgcgtctctaatctcgccttctccgtcgactcccagttcatggtctccatctccgatgacaaaaccctccatctcttggacttcgaaaccggcgacctcatcaaaaccctctgctgccacacaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000123 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0005929 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009987 GO:0010228 GO:0015630 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022008 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030182 GO:0031175 GO:0031248 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034708 GO:0034968 GO:0035097 GO:0036064 GO:0036211 GO:0042393 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0044665 GO:0044782 GO:0048188 GO:0048468 GO:0048608 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051276 GO:0051568 GO:0060271 GO:0061458 GO:0070013 GO:0070925 GO:0071339 GO:0071704 GO:0071840 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

174

Amino Acids

19.65

Weight (kDa)

4.78

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49660
fragaria_vesca	FvH4_1g18760
malus_domestica	MD01G1047000.v1.1 MD11G1213300.v1.1 MD15G1305300.v1.1 MD16G1282400.v1.1
prunus_persica	Prupe.6G211800_v2.0.a1
pyrus_communis	pycom01g07290 pycom15g26850 pycom16g25220
rosa_chinensis	RchiOBHm_Chr1g0324081 RchiOBHm_Chr2g0109631 RchiOBHm_Chr4g0412241 RchiOBHm_Chr7g0189251
rosa_laevigata	RLG00000017751 RLG00000018963 RLG00000020091 RLG00000024634 RLG00000029197 RLG00000032867 RLG00000034693 RLG00000035499
rosa_multiflora	Rmu_sc0000595.1_g000009 Rmu_sc0004483.1_g000044 Rmu_sc0010548.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113400 Rroxscaffold_2G00134080
rosa_rugosa	Rorug02G0161400
rosa_samantha	Rh1AG321900 Rh2AG213600 Rh2BG224000 Rh2CG215800 Rh2CG303700 Rh2DG219100 Rh5DG065100 Rh5DG130500 Rh7DG103300
rosa_wichuraiana	Rw1G015840 Rw2G032920 Rw2G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	398
Acc36I	ACCTGC	1 cut(s)	15
AccB7I	CCANNNNNTGG	2 cut(s)	436, 472
AccI	GTMKAC	1 cut(s)	423
AclWI	GGATC	3 cut(s)	66, 162, 221
AcoI	YGGCCR	1 cut(s)	22
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	3 cut(s)	20, 436, 472
AgsI	TTSAA	1 cut(s)	347
AjnI	CCWGG	3 cut(s)	14, 19, 201
Alw26I	GTCTC	3 cut(s)	241, 406, 445
AlwI	GGATC	3 cut(s)	66, 162, 221
AoxI	GGCC	5 cut(s)	17, 22, 40, 225, 385
ApeKI	GCWGC	1 cut(s)	510
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AseI	ATTAAT	1 cut(s)	182
AspS9I	GGNCC	5 cut(s)	4, 31, 41, 225, 314
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	70
AsuII	TTCGAA	2 cut(s)	381, 480
AvaII	GGWCC	3 cut(s)	4, 31, 314
BalI	TGGCCA	1 cut(s)	24
BauI	CACGAG	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	2 cut(s)	452, 474
BceAI	ACGGC	2 cut(s)	266, 283
BciT130I	CCWGG	3 cut(s)	16, 21, 203
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	3 cut(s)	241, 406, 445
BfuAI	ACCTGC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	511
BlsI	GCNGC	1 cut(s)	512
Bme1390I	CCNGG	4 cut(s)	16, 21, 203, 258
Bme18I	GGWCC	3 cut(s)	4, 31, 314
BmgT120I	GGNCC	5 cut(s)	4, 31, 41, 225, 314
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	4 cut(s)	16, 21, 203, 258
BmrI	ACTGGG	1 cut(s)	424
BmuI	ACTGGG	1 cut(s)	424
Bpu14I	TTCGAA	2 cut(s)	381, 480
BpuMI	CCSGG	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	445
BsaJI	CCNNGG	3 cut(s)	14, 37, 201
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 436, 472
Bse118I	RCCGGY	1 cut(s)	485
Bse1I	ACTGG	3 cut(s)	81, 394, 430
BseBI	CCWGG	3 cut(s)	16, 21, 203
BseDI	CCNNGG	3 cut(s)	14, 37, 201
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	3 cut(s)	20, 436, 472
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	3 cut(s)	81, 394, 430
BseXI	GCAGC	1 cut(s)	497
Bsh1285I	CGRYCG	1 cut(s)	257
BshFI	GGCC	5 cut(s)	19, 24, 42, 227, 387
BsiEI	CGRYCG	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	257, 486
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	3 cut(s)	20, 436, 472
BsmAI	GTCTC	3 cut(s)	241, 406, 445
BsmBI	CGTCTC	2 cut(s)	241, 406
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	5 cut(s)	19, 24, 42, 227, 387
Bso31I	GGTCTC	1 cut(s)	445
Bsp119I	TTCGAA	2 cut(s)	381, 480
Bsp1407I	TGTACA	1 cut(s)	301
Bsp143I	GATC	5 cut(s)	71, 127, 167, 213, 309
BspANI	GGCC	5 cut(s)	19, 24, 42, 227, 387
BspCNI	CTCAG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	15
BspPI	GGATC	3 cut(s)	66, 162, 221
BspT104I	TTCGAA	2 cut(s)	381, 480
BspTNI	GGTCTC	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	485
BsrGI	TGTACA	1 cut(s)	301
BsrI	ACTGG	3 cut(s)	81, 394, 430
BssAI	RCCGGY	1 cut(s)	485
BssECI	CCNNGG	3 cut(s)	14, 37, 201
BssMI	GATC	5 cut(s)	71, 127, 167, 213, 309
BssNI	GRCGYC	1 cut(s)	50
BssSI	CACGAG	1 cut(s)	305
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	3 cut(s)	16, 21, 203
BstACI	GRCGYC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	301
BstBI	TTCGAA	2 cut(s)	381, 480
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	37
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	249
BstKTI	GATC	5 cut(s)	74, 130, 170, 216, 312
BstMAI	GTCTC	3 cut(s)	241, 406, 445
BstMBI	GATC	5 cut(s)	71, 127, 167, 213, 309
BstMCI	CGRYCG	1 cut(s)	257
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	3 cut(s)	16, 21, 203
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	4 cut(s)	14, 19, 201, 256
BstV1I	GCAGC	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	5 cut(s)	19, 24, 42, 227, 387
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	401
BveI	ACCTGC	1 cut(s)	15
Cfr10I	RCCGGY	1 cut(s)	485
Cfr13I	GGNCC	5 cut(s)	4, 31, 41, 225, 314
CseI	GACGC	2 cut(s)	58, 388
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	2 cut(s)	288, 436
CviJI	RGCY	7 cut(s)	19, 24, 42, 145, 206, 227, 387
CviKI_1	RGCY	7 cut(s)	19, 24, 42, 145, 206, 227, 387
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	5 cut(s)	73, 129, 169, 215, 311
DpnII	GATC	5 cut(s)	71, 127, 167, 213, 309
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
EaeI	YGGCCR	1 cut(s)	22
Eco147I	AGGCCT	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	445
Eco47I	GGWCC	3 cut(s)	4, 31, 314
Eco91I	GGTNACC	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	225
EcoO65I	GGTNACC	1 cut(s)	161
EcoRII	CCWGG	3 cut(s)	14, 19, 201
Esp3I	CGTCTC	2 cut(s)	241, 406
FaeI	CATG	2 cut(s)	291, 439
FaiI	YATR	4 cut(s)	289, 366, 368, 437
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	2 cut(s)	287, 435
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	1 cut(s)	511
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	511
GluI	GCNGC	1 cut(s)	511
HaeIII	GGCC	5 cut(s)	19, 24, 42, 227, 387
HapII	CCGG	2 cut(s)	257, 486
HgaI	GACGC	2 cut(s)	58, 388
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	291, 439
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	64, 425
HpaII	CCGG	2 cut(s)	257, 486
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	304, 424
Hpy188I	TCNGA	6 cut(s)	31, 71, 138, 218, 295, 451
Hpy188III	TCNNGA	3 cut(s)	101, 171, 317
Hpy8I	GTNNAC	2 cut(s)	304, 424
Hpy99I	CGWCG	3 cut(s)	52, 275, 425
HpyAV	CCTTC	5 cut(s)	347, 351, 377, 388, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	68
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	291, 439
Kzo9I	GATC	5 cut(s)	71, 127, 167, 213, 309
Lsp1109I	GCAGC	1 cut(s)	497
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	5 cut(s)	73, 129, 169, 215, 311
MboI	GATC	5 cut(s)	71, 127, 167, 213, 309
MflI	RGATCY	1 cut(s)	71
MlsI	TGGCCA	1 cut(s)	24
MluCI	AATT	2 cut(s)	139, 326
MluNI	TGGCCA	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	419
MnlI	CCTC	8 cut(s)	44, 86, 147, 204, 268, 473, 503, 515
Mox20I	TGGCCA	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	24
MseI	TTAA	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	24
MspI	CCGG	2 cut(s)	257, 486
MspR9I	CCNGG	4 cut(s)	16, 21, 203, 258
MvaI	CCWGG	3 cut(s)	16, 21, 203
MwoI	GCNNNNNNNGC	1 cut(s)	16
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	5 cut(s)	71, 127, 167, 213, 309
NlaIII	CATG	2 cut(s)	291, 439
NlaIV	GGNNCC	1 cut(s)	316
NspV	TTCGAA	2 cut(s)	381, 480
PceI	AGGCCT	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	4 cut(s)	387, 396, 417, 486
PfeI	GAWTC	1 cut(s)	64
PflMI	CCANNNNNTGG	2 cut(s)	436, 472
PkrI	GCNGC	1 cut(s)	512
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PshBI	ATTAAT	1 cut(s)	182
Psp6I	CCWGG	3 cut(s)	14, 19, 201
PspEI	GGTNACC	1 cut(s)	161
PspGI	CCWGG	3 cut(s)	14, 19, 201
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	5 cut(s)	4, 31, 41, 225, 314
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SalI	GTCGAC	1 cut(s)	422
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	1 cut(s)	511
Sau3AI	GATC	5 cut(s)	71, 127, 167, 213, 309
Sau96I	GGNCC	5 cut(s)	4, 31, 41, 225, 314
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	4 cut(s)	16, 21, 203, 258
SetI	ASST	6 cut(s)	9, 36, 158, 279, 380, 495
SfuI	TTCGAA	2 cut(s)	381, 480
SinI	GGWCC	3 cut(s)	4, 31, 314
Sse9I	AATT	2 cut(s)	139, 326
SseBI	AGGCCT	1 cut(s)	19
StuI	AGGCCT	1 cut(s)	19
StyD4I	CCNGG	4 cut(s)	14, 19, 201, 256
TaqI	TCGA	3 cut(s)	381, 423, 480
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	2 cut(s)	139, 326
TatI	WGTACW	1 cut(s)	301
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	1 cut(s)	401
TseI	GCWGC	1 cut(s)	510
TspDTI	ATGAA	2 cut(s)	276, 424
TspGWI	ACGGA	2 cut(s)	26, 409
TspRI	CASTG	1 cut(s)	401
Van91I	CCANNNNNTGG	2 cut(s)	436, 472
VpaK11BI	GGWCC	3 cut(s)	4, 31, 314
VspI	ATTAAT	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.