Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002681

Physical Location & Seq

Genomic Coordinates Reverse (-)

21775946 .. 21777691

Gene Structure 1746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG213600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTCGACGGAGCCATCGGATTACAAGCCCTACACCCTGTTCGAAACCCTAACCGGCCACAAGAGCGCCATCTCCGGCGTCAAATTCTCCTCGGACGGCCGCCTCCTCGGCTCCTCCTCGGCCGACAAAACCATCCGCACCTACTCCCTCTCGTCCTCCGCCGACTCCCCAGCTCCGAGCATCACCCCCGCCCAGACCTTCGAGGGCCACGACCAGGGCGTCTCGGACCTCGCCTTCTCCGCCGACTCCCGGTTCATGGTCTCGGCCTCCGACGACAAAACCCTCCGCCTCTGGGACGTGGAAACCGGCGACCTCATCAAAACCCTCCGCGGGCACACCAACTACGTCTTCTGCGCCAACTTCAATCCCCAGTCCAACATGATCGTCTCCGGCTCGTTCGACGAAACGGTGCGCATTTGGGATGTCAAGACCGGAAAGTGCCTCAAGGTGTTGCCGGCTCACTCCGATCCCGTCACGGCCGTTGATTTCAATCGGGACGGCTCGATTATCGTTTCGAGTAGCTACGATGGGCTGTGTAGGACCTGGGATGCTTCCACCGGGCATTGCACCAAGACTTTGATTGACGATGAGAATCCCCCGGTTTCGTTTGTCAAGTTCTCCCCTAATGGCAAGTTCATTCTTGTTGGCACTTTGGATAATACCCTGAGGCTTTGGAACTTTCAAACCGGAAAATGTCTAAAGACTTACACAGGCCACAAGAGTTCAAAATTCTGCATTTCTTCCACCTTTTCTGTGACAAATGGGAAATACATTGTAAGCGGTTCTGAAGATCATTGTTTATACTTGTGGGAATTGCAAAGCAGGAAAATAGTTCAGAAATTGGAAGGTCACACTGATACTGTTATATCAGTTTCATGTCACCCTGAAAAGAACATAATTGCATCTGGTGCACTTGGGAATGATAAGACCGTGAAGATCTGGACTCAGGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000123 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0005929 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009987 GO:0010228 GO:0015630 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022008 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030182 GO:0031175 GO:0031248 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034708 GO:0034968 GO:0035097 GO:0036064 GO:0036211 GO:0042393 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0044665 GO:0044782 GO:0048188 GO:0048468 GO:0048608 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051276 GO:0051568 GO:0060271 GO:0061458 GO:0070013 GO:0070925 GO:0071339 GO:0071704 GO:0071840 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

318

Amino Acids

34.87

Weight (kDa)

6.3

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_MABP1-WDR62_2nd	PF24782	10 - 182	7.8e-19	MABP1/WDR62 second WD40 domain
WD40_CDC20-Fz	PF24807	13 - 80	9e-06	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	13 - 108	6.1e-14	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	14 - 104	1.7e-08	CAF1B/HIR1 beta-propeller domain
WD40	PF00400	15 - 48	3.8e-07	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	15 - 109	1.1e-15	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	15 - 189	1.7e-22	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	16 - 315	5.3e-141	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	16 - 108	6.4e-12	Echinoderm microtubule-associated protein second beta-propeller
EIF3I	PF24805	17 - 109	8.2e-11	EIF3I
Beta-prop_THOC3	PF25174	20 - 302	6.5e-64	THOC3 beta-propeller domain
Beta-prop_WDR41	PF25178	60 - 151	1.5e-10	WDR41
WD40	PF00400	63 - 99	7.8e-12	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	64 - 197	1.2e-34	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	65 - 108	2.4e-09	WDR36/Utp21 second beta-propeller domain
WDR55	PF24796	65 - 314	7.1e-26	WDR55
Beta-prop_WDR3_2nd	PF25172	66 - 185	5.9e-21	WDR3 second beta-propeller domain
WD40_Gbeta	PF25391	68 - 183	3.6e-17	G protein beta WD-40 repeat protein
EIF3I	PF24805	68 - 152	4.5e-15	EIF3I
Beta-prop_EML	PF23409	69 - 130	6.6e-07	Echinoderm microtubule-associated protein first beta-propeller
WD40_MABP1-WDR62_1st	PF24780	69 - 173	4.2e-11	MABP1/WDR62 first WD40 domain
WD40_CDC20-Fz	PF24807	70 - 186	1.2e-17	CDC20/Fizzy WD40 domain
Beta-prop_IFT122_1st	PF23381	72 - 174	2.5e-09	IFT122 first beta-propeller
WD40_WDHD1_1st	PF24817	73 - 151	3.9e-16	WDHD1 first WD40 domain
NBCH_WD40	PF20426	74 - 146	4e-06	Neurobeachin beta propeller domain
WDR90_beta-prop_4th	PF23342	74 - 204	2.1e-11	WDR90, 4th beta-propeller
Beta-prop_WDR75_1st	PF23869	79 - 143	1.1e-08	WD repeat-containing protein 75 first beta-propeller
Beta-prop_SCAP	PF24017	84 - 187	3.5e-10	SCAP Beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	85 - 189	7.9e-11	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	89 - 227	1.5e-14	WDR36/Utp21 first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	99 - 148	8.8e-07	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	102 - 272	4.8e-32	Prp19 WD40 domain
WD40	PF00400	104 - 141	1.1e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	105 - 192	2.9e-14	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	109 - 225	6e-18	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	121 - 281	3.5e-21	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR19_1st	PF23389	123 - 278	1.2e-06	WDR19 first beta-propeller
Beta-prop_EML	PF23409	126 - 221	4.6e-07	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	144 - 213	3.6e-06	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	145 - 183	2.2e-10	WD domain, G-beta repeat
Beta-prop_Aladin	PF25460	149 - 276	7e-10	Aladin seven-bladed propeller
WD40_WDHD1_1st	PF24817	150 - 193	3.9e-06	WDHD1 first WD40 domain
EIF3I	PF24805	151 - 245	6.1e-10	EIF3I
WD40_Gbeta	PF25391	151 - 274	2.1e-13	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st	PF25171	171 - 315	1.2e-10	WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz	PF24807	181 - 316	5.5e-21	CDC20/Fizzy WD40 domain
WD40	PF00400	188 - 226	1.2e-06	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	194 - 316	2.3e-11	TEP-1 second beta-propeller
Beta-prop_NWD2_C	PF23586	194 - 303	5.9e-06	NWD2 C-terminal beta-propeller
Beta-prop_WDR3_1st	PF25173	196 - 315	6.4e-22	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	198 - 244	1.6e-06	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	201 - 315	2.9e-13	WDR3 second beta-propeller domain
EIF3I	PF24805	201 - 281	6.5e-07	EIF3I
WD40_MABP1-WDR62_2nd	PF24782	203 - 272	1.3e-07	MABP1/WDR62 second WD40 domain
Beta-prop_ACSF4	PF13570	206 - 305	9.6e-07	Beta-alanine-activating enzyme, beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	213 - 314	9e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML	PF23409	221 - 303	9.3e-09	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	230 - 270	1.8e-06	WD domain, G-beta repeat
WD40_Prp19	PF24814	239 - 317	3e-11	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	253 - 317	1.1e-07	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	254 - 315	1.8e-11	THOC3 beta-propeller domain
WD40	PF00400	276 - 314	8.8e-08	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

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Orthologous Genes (Group: OG0002681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49660
fragaria_vesca	FvH4_1g18760
malus_domestica	MD01G1047000.v1.1 MD11G1213300.v1.1 MD15G1305300.v1.1 MD16G1282400.v1.1
prunus_persica	Prupe.6G211800_v2.0.a1
pyrus_communis	pycom01g07290 pycom15g26850 pycom16g25220
rosa_chinensis	RchiOBHm_Chr1g0324081 RchiOBHm_Chr2g0109631 RchiOBHm_Chr4g0412241 RchiOBHm_Chr7g0189251
rosa_laevigata	RLG00000017751 RLG00000018963 RLG00000020091 RLG00000024634 RLG00000029197 RLG00000032867 RLG00000034693 RLG00000035499
rosa_multiflora	Rmu_sc0000595.1_g000009 Rmu_sc0004483.1_g000044 Rmu_sc0010548.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113400 Rroxscaffold_2G00134080
rosa_rugosa	Rorug02G0161400
rosa_samantha	Rh1AG321900 Rh2AG213600 Rh2BG224000 Rh2CG215800 Rh2CG303700 Rh2DG219100 Rh5DG065100 Rh5DG130500 Rh7DG103300
rosa_wichuraiana	Rw1G015840 Rw2G032920 Rw2G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc16I	TGCGCA	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	330
AciI	CCGC	9 cut(s)	100, 136, 159, 189, 240, 286, 328, 330, 780
AclWI	GGATC	1 cut(s)	461
AcoI	YGGCCR	4 cut(s)	55, 97, 120, 477
AcsI	RAATTY	2 cut(s)	83, 728
AcuI	CTGAAG	1 cut(s)	807
AcyI	GRCGYC	2 cut(s)	78, 219
AfiI	CCNNNNNNNGG	5 cut(s)	214, 249, 256, 292, 330
AgsI	TTSAA	4 cut(s)	364, 490, 683, 726
AjiI	CACGTC	1 cut(s)	298
AjnI	CCWGG	2 cut(s)	213, 542
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	2 cut(s)	173, 522
AluI	AGCT	2 cut(s)	173, 522
Alw21I	GWGCWC	1 cut(s)	913
Alw26I	GTCTC	3 cut(s)	226, 265, 391
Alw44I	GTGCAC	1 cut(s)	909
AlwI	GGATC	1 cut(s)	461
AoxI	GGCC	7 cut(s)	55, 97, 120, 205, 264, 477, 712
ApaLI	GTGCAC	1 cut(s)	909
ApoI	RAATTY	2 cut(s)	83, 728
AspLEI	GCGC	3 cut(s)	68, 356, 414
AspS9I	GGNCC	3 cut(s)	205, 226, 540
AsuC2I	CCSGG	3 cut(s)	250, 559, 599
AsuHPI	GGTGA	2 cut(s)	175, 872
AsuII	TTCGAA	1 cut(s)	42
AvaII	GGWCC	2 cut(s)	226, 540
AxyI	CCTNAGG	1 cut(s)	665
BaeGI	GKGCMC	2 cut(s)	336, 913
BbsI	GAAGAC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	913
BccI	CCATC	4 cut(s)	22, 77, 140, 521
BceAI	ACGGC	4 cut(s)	112, 464, 492, 514
BciT130I	CCWGG	2 cut(s)	215, 544
BcnI	CCSGG	3 cut(s)	250, 559, 599
BcoDI	GTCTC	3 cut(s)	226, 265, 391
BfoI	RGCGCY	1 cut(s)	69
BglI	GCCNNNNNGGC	1 cut(s)	108
BglII	AGATCT	1 cut(s)	936
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
Bme1390I	CCNGG	5 cut(s)	215, 250, 544, 559, 599
Bme18I	GGWCC	2 cut(s)	226, 540
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	3 cut(s)	205, 226, 540
BmiI	GGNNCC	2 cut(s)	12, 112
BmrFI	CCNGG	5 cut(s)	215, 250, 544, 559, 599
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	3 cut(s)	189, 538, 911
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	340
Bpu14I	TTCGAA	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	3 cut(s)	250, 559, 599
BsaBI	GATNNNNATC	2 cut(s)	489, 591
BsaHI	GRCGYC	2 cut(s)	78, 219
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	7 cut(s)	90, 106, 117, 214, 328, 543, 597
BsaWI	WCCGGW	2 cut(s)	431, 686
Bsc4I	CCNNNNNNNGG	5 cut(s)	214, 249, 256, 292, 330
Bse118I	RCCGGY	3 cut(s)	53, 305, 454
Bse1I	ACTGG	1 cut(s)	370
Bse21I	CCTNAGG	1 cut(s)	665
Bse3DI	GCAATG	1 cut(s)	562
Bse8I	GATNNNNATC	2 cut(s)	489, 591
BseBI	CCWGG	2 cut(s)	215, 544
BseDI	CCNNGG	7 cut(s)	90, 106, 117, 214, 328, 543, 597
BseGI	GGATG	3 cut(s)	132, 427, 553
BseJI	GATNNNNATC	2 cut(s)	489, 591
BseLI	CCNNNNNNNGG	5 cut(s)	214, 249, 256, 292, 330
BseMI	GCAATG	1 cut(s)	562
BseMII	CTCAG	1 cut(s)	656
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	4 cut(s)	79, 95, 103, 106
BseSI	GKGCMC	2 cut(s)	336, 913
BseX3I	CGGCCG	3 cut(s)	97, 120, 477
BseYI	CCCAGC	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	330
Bsh1285I	CGRYCG	3 cut(s)	100, 123, 480
BshFI	GGCC	7 cut(s)	57, 99, 122, 207, 266, 479, 714
BsiEI	CGRYCG	3 cut(s)	100, 123, 480
BsiHKAI	GWGCWC	1 cut(s)	913
BslFI	GGGAC	2 cut(s)	308, 509
BslI	CCNNNNNNNGG	5 cut(s)	214, 249, 256, 292, 330
BsmAI	GTCTC	3 cut(s)	226, 265, 391
BsmBI	CGTCTC	2 cut(s)	226, 391
BsmFI	GGGAC	2 cut(s)	308, 509
BsnI	GGCC	7 cut(s)	57, 99, 122, 207, 266, 479, 714
Bso31I	GGTCTC	1 cut(s)	265
Bsp119I	TTCGAA	1 cut(s)	42
Bsp1286I	GDGCHC	2 cut(s)	336, 913
Bsp143I	GATC	4 cut(s)	381, 466, 790, 936
BspACI	CCGC	9 cut(s)	100, 136, 159, 189, 240, 286, 328, 330, 780
BspANI	GGCC	7 cut(s)	57, 99, 122, 207, 266, 479, 714
BspCNI	CTCAG	1 cut(s)	657
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	12, 112
BspPI	GGATC	1 cut(s)	461
BspT104I	TTCGAA	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	562
BsrFI	RCCGGY	3 cut(s)	53, 305, 454
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	3 cut(s)	53, 305, 454
BssECI	CCNNGG	7 cut(s)	90, 106, 117, 214, 328, 543, 597
BssMI	GATC	4 cut(s)	381, 466, 790, 936
BssNI	GRCGYC	2 cut(s)	78, 219
Bst2UI	CCWGG	2 cut(s)	215, 544
Bst4CI	ACNGT	3 cut(s)	409, 862, 931
BstACI	GRCGYC	2 cut(s)	78, 219
BstAPI	GCANNNNNTGC	1 cut(s)	908
BstBI	TTCGAA	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	332, 456
BstDEI	CTNAG	2 cut(s)	665, 945
BstDSI	CCRYGG	1 cut(s)	328
BstF5I	GGATG	3 cut(s)	132, 427, 553
BstFNI	CGCG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	3 cut(s)	68, 356, 414
BstKTI	GATC	4 cut(s)	384, 469, 793, 939
BstMAI	GTCTC	3 cut(s)	226, 265, 391
BstMBI	GATC	4 cut(s)	381, 466, 790, 936
BstMCI	CGRYCG	3 cut(s)	100, 123, 480
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 108, 239, 908
BstNI	CCWGG	2 cut(s)	215, 544
BstSCI	CCNGG	5 cut(s)	213, 248, 542, 557, 597
BstSLI	GKGCMC	2 cut(s)	336, 913
BstUI	CGCG	1 cut(s)	330
BstV2I	GAAGAC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	936
BstYI	RGATCY	1 cut(s)	936
BstZI	CGGCCG	3 cut(s)	97, 120, 477
Bsu36I	CCTNAGG	1 cut(s)	665
BsuRI	GGCC	7 cut(s)	57, 99, 122, 207, 266, 479, 714
BtgI	CCRYGG	1 cut(s)	328
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	3 cut(s)	132, 427, 553
BtsIMutI	CAGTG	1 cut(s)	852
Cac8I	GCNNGC	2 cut(s)	332, 456
CfoI	GCGC	3 cut(s)	68, 356, 414
Cfr10I	RCCGGY	3 cut(s)	53, 305, 454
Cfr13I	GGNCC	3 cut(s)	205, 226, 540
Cfr42I	CCGCGG	1 cut(s)	331
CseI	GACGC	2 cut(s)	67, 208
CviAII	CATG	3 cut(s)	256, 379, 876
DdeI	CTNAG	2 cut(s)	665, 945
DpnI	GATC	4 cut(s)	383, 468, 792, 938
DpnII	GATC	4 cut(s)	381, 466, 790, 936
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	4 cut(s)	55, 97, 120, 477
EagI	CGGCCG	3 cut(s)	97, 120, 477
EciI	GGCGGA	3 cut(s)	148, 229, 275
EclXI	CGGCCG	3 cut(s)	97, 120, 477
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	226, 540
Eco52I	CGGCCG	3 cut(s)	97, 120, 477
Eco57I	CTGAAG	1 cut(s)	807
Eco81I	CCTNAGG	1 cut(s)	665
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRII	CCWGG	2 cut(s)	213, 542
Esp3I	CGTCTC	2 cut(s)	226, 391
FaeI	CATG	3 cut(s)	259, 382, 879
FaiI	YATR	6 cut(s)	257, 380, 802, 866, 877, 896
FaqI	GGGAC	2 cut(s)	308, 509
FatI	CATG	3 cut(s)	255, 378, 875
FauI	CCCGC	2 cut(s)	196, 323
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	3 cut(s)	119, 434, 560
Fsp4HI	GCNGC	1 cut(s)	100
FspAI	RTGCGCAY	1 cut(s)	413
FspI	TGCGCA	1 cut(s)	413
GlaI	GCGC	3 cut(s)	67, 355, 413
GluI	GCNGC	1 cut(s)	100
GsaI	CCCAGC	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	7 cut(s)	57, 99, 122, 207, 266, 479, 714
HgaI	GACGC	2 cut(s)	67, 208
HhaI	GCGC	3 cut(s)	68, 356, 414
Hin1I	GRCGYC	2 cut(s)	78, 219
Hin1II	CATG	3 cut(s)	259, 382, 879
Hin6I	GCGC	3 cut(s)	66, 354, 412
HinP1I	GCGC	3 cut(s)	66, 354, 412
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	4 cut(s)	164, 245, 592, 943
HphI	GGTGA	2 cut(s)	175, 872
Hpy166II	GTNNAC	2 cut(s)	6, 911
Hpy188I	TCNGA	8 cut(s)	19, 94, 177, 226, 271, 466, 787, 837
Hpy188III	TCNNGA	4 cut(s)	427, 494, 940, 947
Hpy8I	GTNNAC	2 cut(s)	6, 911
Hpy99I	CGWCG	3 cut(s)	10, 275, 404
HpyAV	CCTTC	3 cut(s)	208, 244, 839
HpyCH4III	ACNGT	3 cut(s)	409, 862, 931
HpyCH4IV	ACGT	2 cut(s)	297, 345
HpyCH4V	TGCA	5 cut(s)	567, 735, 817, 902, 911
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 108, 239, 908
HpyF3I	CTNAG	2 cut(s)	665, 945
HpySE526I	ACGT	2 cut(s)	297, 345
Hsp92I	GRCGYC	2 cut(s)	78, 219
Hsp92II	CATG	3 cut(s)	259, 382, 879
HspAI	GCGC	3 cut(s)	66, 354, 412
KroI	GCCGGC	1 cut(s)	454
KroNI	GCCGGC	1 cut(s)	456
KspI	CCGCGG	1 cut(s)	331
Kzo9I	GATC	4 cut(s)	381, 466, 790, 936
LmnI	GCTCC	3 cut(s)	10, 116, 178
LweI	GCATC	3 cut(s)	189, 538, 911
MaeII	ACGT	2 cut(s)	297, 345
MaeIII	GTNAC	4 cut(s)	472, 754, 848, 878
MalI	GATC	4 cut(s)	383, 468, 792, 938
MboI	GATC	4 cut(s)	381, 466, 790, 936
MboII	GAAGA	4 cut(s)	340, 732, 800, 946
MflI	RGATCY	1 cut(s)	936
MhlI	GDGCHC	2 cut(s)	336, 913
MluCI	AATT	5 cut(s)	83, 728, 812, 839, 897
MlyI	GAGTC	3 cut(s)	158, 239, 937
MmeI	TCCRAC	2 cut(s)	294, 399
MroNI	GCCGGC	1 cut(s)	454
MspA1I	CMGCKG	1 cut(s)	330
MspR9I	CCNGG	5 cut(s)	215, 250, 544, 559, 599
MvaI	CCWGG	2 cut(s)	215, 544
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	4 cut(s)	63, 108, 239, 908
NaeI	GCCGGC	1 cut(s)	456
NciI	CCSGG	3 cut(s)	250, 559, 599
NdeII	GATC	4 cut(s)	381, 466, 790, 936
NgoMIV	GCCGGC	1 cut(s)	454
NlaIII	CATG	3 cut(s)	259, 382, 879
NlaIV	GGNNCC	2 cut(s)	12, 112
NmeAIII	GCCGAG	3 cut(s)	87, 98, 242
NmuCI	GTSAC	4 cut(s)	472, 754, 848, 878
NsbI	TGCGCA	1 cut(s)	413
NspV	TTCGAA	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 216
PdiI	GCCGGC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	592
PkrI	GCNGC	1 cut(s)	101
PleI	GAGTC	3 cut(s)	158, 239, 937
PpsI	GAGTC	3 cut(s)	158, 239, 937
PpuMI	RGGWCCY	1 cut(s)	540
Psp5II	RGGWCCY	1 cut(s)	540
Psp6I	CCWGG	2 cut(s)	213, 542
PspFI	CCCAGC	1 cut(s)	169
PspGI	CCWGG	2 cut(s)	213, 542
PspN4I	GGNNCC	2 cut(s)	12, 112
PspPI	GGNCC	3 cut(s)	205, 226, 540
PspPPI	RGGWCCY	1 cut(s)	540
PsuI	RGATCY	1 cut(s)	936
SacII	CCGCGG	1 cut(s)	331
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	4 cut(s)	381, 466, 790, 936
Sau96I	GGNCC	3 cut(s)	205, 226, 540
SchI	GAGTC	3 cut(s)	158, 239, 937
ScrFI	CCNGG	5 cut(s)	215, 250, 544, 559, 599
SduI	GDGCHC	2 cut(s)	336, 913
SfaNI	GCATC	3 cut(s)	189, 538, 911
Sfr303I	CCGCGG	1 cut(s)	331
SfuI	TTCGAA	1 cut(s)	42
SgrBI	CCGCGG	1 cut(s)	331
SinI	GGWCC	2 cut(s)	226, 540
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	5 cut(s)	83, 728, 812, 839, 897
SsiI	CCGC	9 cut(s)	100, 136, 159, 189, 240, 286, 328, 330, 780
StyD4I	CCNGG	5 cut(s)	213, 248, 542, 557, 597
TaaI	ACNGT	3 cut(s)	409, 862, 931
TaiI	ACGT	2 cut(s)	300, 348
TaqI	TCGA	6 cut(s)	5, 42, 201, 399, 503, 515
TasI	AATT	5 cut(s)	83, 728, 812, 839, 897
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	592
TscAI	CASTG	1 cut(s)	859
TseFI	GTSAC	4 cut(s)	472, 754, 848, 878
Tsp45I	GTSAC	4 cut(s)	472, 754, 848, 878
TspDTI	ATGAA	3 cut(s)	244, 625, 864
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	859
VneI	GTGCAC	1 cut(s)	909
VpaK11BI	GGWCC	2 cut(s)	226, 540
XapI	RAATTY	2 cut(s)	83, 728
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.