RLG00000018963

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002681
Physical Location & Seq
Reverse (-)
43678217 .. 43678702
486 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018963

Sequence Viewer

Length: 339 bp
ATGGACCTGCTTCCCAGGCCTGGCCAATCGGACCTCCGTGCCCCTGCGACGCCATTTGATTTAATTCTCAGATCCCTTACCAGTCGAGGATTTGACAATCCAGATTTGTCTTTGTTATACGACGGCTTCGGGGATGGTTTTGAACTGATGGCAACCAGGTTTTGGTTTTGTGGTCTGACTTTGTACACAAGATCGGTCCCGATTGTGAATTGTTTGGATTGCTTGGTGTGCTGCATCTCTATTGCCGTCAATGGTGATGGTAATATCGATGGTGTCCTACATGTCCGGTGTTCTGGGTATGCAATGGGTTTTCTAGAGGATGAGCGATGGAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.51

Weight (kDa)

4.72

Isoelectric Point (pI)

58.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 15
AccB7I CCANNNNNTGG 1 cut(s) 162
AclWI GGATC 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 20, 162
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 3 cut(s) 14, 19, 155
AlwI GGATC 1 cut(s) 66
AoxI GGCC 2 cut(s) 17, 22
ApeKI GCWGC 1 cut(s) 231
AspS9I GGNCC 3 cut(s) 4, 31, 196
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 3 cut(s) 4, 31, 196
BaeGI GKGCMC 1 cut(s) 43
BalI TGGCCA 1 cut(s) 24
BbvI GCAGC 1 cut(s) 218
BccI CCATC 5 cut(s) 128, 142, 251, 263, 321
BceAI ACGGC 2 cut(s) 139, 230
BciT130I CCWGG 3 cut(s) 16, 21, 157
BfaI CTAG 1 cut(s) 314
BfuAI ACCTGC 1 cut(s) 15
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
Bme1390I CCNGG 3 cut(s) 16, 21, 157
Bme18I GGWCC 3 cut(s) 4, 31, 196
BmgT120I GGNCC 3 cut(s) 4, 31, 196
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 3 cut(s) 16, 21, 157
BmsI GCATC 1 cut(s) 243
Bsa29I ATCGAT 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 285
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 162
Bse1I ACTGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 3 cut(s) 16, 21, 157
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 2 cut(s) 139, 325
BseLI CCNNNNNNNGG 2 cut(s) 20, 162
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 81
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 1 cut(s) 218
BshFI GGCC 2 cut(s) 19, 24
BshVI ATCGAT 1 cut(s) 267
BsiSI CCGG 1 cut(s) 286
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 2 cut(s) 20, 162
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 2 cut(s) 19, 24
Bsp1286I GDGCHC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 2 cut(s) 71, 191
BspANI GGCC 2 cut(s) 19, 24
BspCNI CTCAG 1 cut(s) 81
BspDI ATCGAT 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 198
BspMI ACCTGC 1 cut(s) 15
BspPI GGATC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 309
BsrGI TGTACA 1 cut(s) 183
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 2 cut(s) 71, 191
BssNI GRCGYC 1 cut(s) 50
Bst2UI CCWGG 3 cut(s) 16, 21, 157
BstACI GRCGYC 1 cut(s) 50
BstAUI TGTACA 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 139, 325
BstKTI GATC 2 cut(s) 74, 194
BstMBI GATC 2 cut(s) 71, 191
BstMWI GCNNNNNNNGC 2 cut(s) 16, 228
BstNI CCWGG 3 cut(s) 16, 21, 157
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 3 cut(s) 14, 19, 155
BstSLI GKGCMC 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
Bsu15I ATCGAT 1 cut(s) 267
BsuRI GGCC 2 cut(s) 19, 24
BsuTUI ATCGAT 1 cut(s) 267
BtsCI GGATG 2 cut(s) 139, 325
BveI ACCTGC 1 cut(s) 15
Cfr13I GGNCC 3 cut(s) 4, 31, 196
ClaI ATCGAT 1 cut(s) 267
CseI GACGC 1 cut(s) 58
CsiI ACCWGGT 1 cut(s) 155
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 281
CviJI RGCY 3 cut(s) 19, 24, 126
CviKI_1 RGCY 3 cut(s) 19, 24, 126
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 68
DpnI GATC 2 cut(s) 73, 193
DpnII GATC 2 cut(s) 71, 191
EaeI YGGCCR 1 cut(s) 22
Eco147I AGGCCT 1 cut(s) 19
Eco47I GGWCC 3 cut(s) 4, 31, 196
EcoRII CCWGG 3 cut(s) 14, 19, 155
FaeI CATG 1 cut(s) 284
FaiI YATR 3 cut(s) 118, 282, 300
FaqI GGGAC 1 cut(s) 182
FatI CATG 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 232
FokI GGATG 2 cut(s) 146, 332
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 1 cut(s) 314
GluI GCNGC 1 cut(s) 232
HaeIII GGCC 2 cut(s) 19, 24
HapII CCGG 1 cut(s) 286
HgaI GACGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 1 cut(s) 284
HpaII CCGG 1 cut(s) 286
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 3 cut(s) 31, 71, 177
Hpy188III TCNNGA 3 cut(s) 101, 199, 314
Hpy8I GTNNAC 1 cut(s) 186
Hpy99I CGWCG 2 cut(s) 52, 125
HpyCH4V TGCA 2 cut(s) 234, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 228
HpyF3I CTNAG 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 1 cut(s) 284
Kzo9I GATC 2 cut(s) 71, 191
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 1 cut(s) 243
MabI ACCWGGT 1 cut(s) 155
MaeI CTAG 1 cut(s) 314
MalI GATC 2 cut(s) 73, 193
MboI GATC 2 cut(s) 71, 191
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 24
MluCI AATT 2 cut(s) 63, 208
MluNI TGGCCA 1 cut(s) 24
MnlI CCTC 4 cut(s) 44, 80, 310, 324
Mox20I TGGCCA 1 cut(s) 24
MscI TGGCCA 1 cut(s) 24
MseI TTAA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 24
MspI CCGG 1 cut(s) 286
MspR9I CCNGG 3 cut(s) 16, 21, 157
MvaI CCWGG 3 cut(s) 16, 21, 157
MwoI GCNNNNNNNGC 2 cut(s) 16, 228
NdeII GATC 2 cut(s) 71, 191
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 1 cut(s) 198
NspI RCATGY 1 cut(s) 284
PceI AGGCCT 1 cut(s) 19
PciI ACATGT 1 cut(s) 280
PflMI CCANNNNNTGG 1 cut(s) 162
PkrI GCNGC 1 cut(s) 233
PscI ACATGT 1 cut(s) 280
Psp6I CCWGG 3 cut(s) 14, 19, 155
PspGI CCWGG 3 cut(s) 14, 19, 155
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 3 cut(s) 4, 31, 196
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 2 cut(s) 71, 191
Sau96I GGNCC 3 cut(s) 4, 31, 196
ScrFI CCNGG 3 cut(s) 16, 21, 157
SduI GDGCHC 1 cut(s) 43
SetI ASST 3 cut(s) 9, 36, 161
SexAI ACCWGGT 1 cut(s) 155
SfaNI GCATC 1 cut(s) 243
SinI GGWCC 3 cut(s) 4, 31, 196
Sse9I AATT 2 cut(s) 63, 208
SseBI AGGCCT 1 cut(s) 19
SspMI CTAG 1 cut(s) 314
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 3 cut(s) 14, 19, 155
TaqI TCGA 2 cut(s) 85, 267
TaqII GACCGA 1 cut(s) 184
TasI AATT 2 cut(s) 63, 208
TatI WGTACW 1 cut(s) 183
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseI GCWGC 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 26
Van91I CCANNNNNTGG 1 cut(s) 162
VpaK11BI GGWCC 3 cut(s) 4, 31, 196
XbaI TCTAGA 1 cut(s) 313
XceI RCATGY 1 cut(s) 284
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.