Prupe.6G211800_v2.0.a1

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
22014928 .. 22017716
2789 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G211800.1

Sequence Viewer

Length: 966 bp
ATGTCGAAGGATCCATCGGAGTCCTACAAACCCTACACCCTCTGCGAAACCCTAACGGGCCACAAGAGCGCCATTTCAGGCGTTAAATTCTCCTCCGACGGCCGCCTCCTCGGCTCCTCCTCCGCCGATAAGACCATCCGCACCTACTCCCTCACCTTCTCCGATGACTCTTCGTCCTCCACTCCCACCATCTCCGCCGCCCAAACCTTCGAAGGCCACTCGCAGGGTGTCTCCGATCTCGCCTTCTCTGCCGACTCCCGCTTCATGGTCTCCGCCTCAGACGACAAGACCCTTCGCCTCTGGGACGTCGCCACCGGCCAGGTCATCAAGACCCTCCATGGCCACACCAACTACGTCTTCTGCGCCAACTTCAATCCCCAGTCCAATATGATCGTCTCGGGTTCCTTCGACGAAACGGTGCGCATTTGGGATGTTAAGACCGGGAAGTGCTTGAAGGTTTTGCCGGCTCACTCCGACCCCGTCACCGCCGTCGATTTCAATCGGGATGGCTCCATTATTGTCTCTAGTAGCTATGATGGGTTGTGCAGGACCTGGGATGCCTCTACTGGTCACTGCACTAAGACTTTGATTGATGACGAGAATCCCCCAGTTTCCTTTGTTAAGTTCGCGCCCAATGGCAAGTACATTCTTGTTGGCACTTTGGATGATACTTTGAGGCTTTGGAACTTTTCAACTGGGAAATGTCTAAAGACTTACACAGGTCACAAGAGCTCGAGATTCTGCATTTCTTCCACCTTTTCTGTGACAAATGGGAAATACATTGTAAGTGGTTCTGAAGATAATTGTCTATACCTATGGGAATTGCAAAGCAGGAAGATAGTTCAGAAATTGGAAGGTCACACGGACACTGTTATATCAGTATCGTGCCACCCCACTAAGAACATAATTGCATCTGGTGCACTTGGGAATGACAAGACGGTGAAGATCTGGACCCAGGAGAACTGA

Protein Analysis

322

Amino Acids

35.06

Weight (kDa)

6.74

Isoelectric Point (pI)

30.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 309
Acc16I TGCGCA 1 cut(s) 422
AccII CGCG 1 cut(s) 629
AciI CCGC 8 cut(s) 103, 123, 139, 195, 198, 259, 273, 486
AclWI GGATC 2 cut(s) 5, 18
AcoI YGGCCR 3 cut(s) 100, 316, 340
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 816
AcyI GRCGYC 1 cut(s) 306
AfaI GTAC 1 cut(s) 644
AfiI CCNNNNNNNGG 2 cut(s) 223, 265
AgsI TTSAA 4 cut(s) 373, 454, 499, 693
AhdI GACNNNNNGTC 1 cut(s) 172
AjnI CCWGG 3 cut(s) 318, 551, 954
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 2 cut(s) 531, 732
AluI AGCT 2 cut(s) 531, 732
Alw21I GWGCWC 2 cut(s) 734, 922
Alw26I GTCTC 4 cut(s) 235, 274, 400, 526
Alw44I GTGCAC 1 cut(s) 918
AlwI GGATC 2 cut(s) 5, 18
AlwNI CAGNNNCTG 1 cut(s) 552
Ama87I CYCGRG 2 cut(s) 397, 733
AoxI GGCC 5 cut(s) 58, 100, 214, 316, 340
ApaLI GTGCAC 1 cut(s) 918
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 4 cut(s) 71, 365, 423, 631
AspS9I GGNCC 3 cut(s) 58, 549, 951
AsuC2I CCSGG 1 cut(s) 442
AsuHPI GGTGA 3 cut(s) 145, 475, 952
AsuII TTCGAA 1 cut(s) 210
AvaI CYCGRG 2 cut(s) 397, 733
AvaII GGWCC 2 cut(s) 549, 951
BaeGI GKGCMC 1 cut(s) 922
BalI TGGCCA 1 cut(s) 342
BamHI GGATCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 734
BbsI GAAGAC 1 cut(s) 349
Bbv12I GWGCWC 2 cut(s) 734, 922
BccI CCATC 5 cut(s) 22, 143, 197, 500, 530
BceAI ACGGC 2 cut(s) 115, 473
BciT130I CCWGG 3 cut(s) 320, 553, 956
BcnI CCSGG 1 cut(s) 442
BcoDI GTCTC 4 cut(s) 235, 274, 400, 526
BfaI CTAG 1 cut(s) 525
BfoI RGCGCY 1 cut(s) 72
BglI GCCNNNNNGGC 1 cut(s) 111
BglII AGATCT 1 cut(s) 945
BisI GCNGC 2 cut(s) 103, 198
BlsI GCNGC 2 cut(s) 104, 199
Bme1390I CCNGG 4 cut(s) 320, 442, 553, 956
Bme18I GGWCC 2 cut(s) 549, 951
BmeRI GACNNNNNGTC 1 cut(s) 172
BmeT110I CYCGRG 2 cut(s) 397, 733
BmgT120I GGNCC 3 cut(s) 58, 549, 951
BmiI GGNNCC 5 cut(s) 12, 115, 403, 511, 953
BmrFI CCNGG 4 cut(s) 320, 442, 553, 956
BmrI ACTGGG 3 cut(s) 373, 602, 705
BmsI GCATC 2 cut(s) 547, 920
BmuI ACTGGG 3 cut(s) 373, 602, 705
BpiI GAAGAC 1 cut(s) 349
Bpu14I TTCGAA 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 442
BsaBI GATNNNNATC 1 cut(s) 498
BsaHI GRCGYC 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 274
BsaJI CCNNGG 4 cut(s) 109, 337, 552, 954
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 265
Bse118I RCCGGY 2 cut(s) 314, 463
Bse1I ACTGG 4 cut(s) 379, 571, 608, 700
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 3 cut(s) 320, 553, 956
BseDI CCNNGG 4 cut(s) 109, 337, 552, 954
BseGI GGATG 5 cut(s) 135, 436, 511, 562, 670
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 2 cut(s) 223, 265
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 4 cut(s) 379, 571, 608, 700
BseRI GAGGAG 4 cut(s) 82, 98, 106, 109
BseSI GKGCMC 1 cut(s) 922
BseX3I CGGCCG 1 cut(s) 100
BsgI GTGCAG 2 cut(s) 559, 565
Bsh1236I CGCG 1 cut(s) 629
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 5 cut(s) 60, 102, 216, 318, 342
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 2 cut(s) 734, 922
BsiHKCI CYCGRG 2 cut(s) 397, 733
BsiSI CCGG 3 cut(s) 315, 441, 464
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 2 cut(s) 223, 265
BsmAI GTCTC 4 cut(s) 235, 274, 400, 526
BsmBI CGTCTC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 5 cut(s) 60, 102, 216, 318, 342
Bso31I GGTCTC 1 cut(s) 274
BsoBI CYCGRG 2 cut(s) 397, 733
Bsp119I TTCGAA 1 cut(s) 210
Bsp1286I GDGCHC 2 cut(s) 734, 922
Bsp143I GATC 4 cut(s) 10, 235, 390, 945
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 8 cut(s) 103, 123, 139, 195, 198, 259, 273, 486
BspANI GGCC 5 cut(s) 60, 102, 216, 318, 342
BspCNI CTCAG 1 cut(s) 290
BspFNI CGCG 1 cut(s) 629
BspLI GGNNCC 5 cut(s) 12, 115, 403, 511, 953
BspPI GGATC 2 cut(s) 5, 18
BspT104I TTCGAA 1 cut(s) 210
BspTNI GGTCTC 1 cut(s) 274
BsrFI RCCGGY 2 cut(s) 314, 463
BsrI ACTGG 4 cut(s) 379, 571, 608, 700
BssAI RCCGGY 2 cut(s) 314, 463
BssECI CCNNGG 4 cut(s) 109, 337, 552, 954
BssMI GATC 4 cut(s) 10, 235, 390, 945
BssNI GRCGYC 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 337
Bst2UI CCWGG 3 cut(s) 320, 553, 956
Bst4CI ACNGT 3 cut(s) 418, 871, 940
Bst6I CTCTTC 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 306
BstAPI GCANNNNNTGC 1 cut(s) 917
BstBI TTCGAA 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 3 cut(s) 277, 579, 897
BstDSI CCRYGG 1 cut(s) 337
BstF5I GGATG 5 cut(s) 135, 436, 511, 562, 670
BstFNI CGCG 1 cut(s) 629
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 4 cut(s) 71, 365, 423, 631
BstKTI GATC 4 cut(s) 13, 238, 393, 948
BstMAI GTCTC 4 cut(s) 235, 274, 400, 526
BstMBI GATC 4 cut(s) 10, 235, 390, 945
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 4 cut(s) 66, 111, 248, 917
BstNI CCWGG 3 cut(s) 320, 553, 956
BstSCI CCNGG 4 cut(s) 318, 440, 551, 954
BstSLI GKGCMC 1 cut(s) 922
BstUI CGCG 1 cut(s) 629
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 2 cut(s) 10, 945
BstYI RGATCY 2 cut(s) 10, 945
BstZI CGGCCG 1 cut(s) 100
BsuRI GGCC 5 cut(s) 60, 102, 216, 318, 342
BtgI CCRYGG 1 cut(s) 337
BtsCI GGATG 5 cut(s) 135, 436, 511, 562, 670
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 2 cut(s) 571, 867
Cac8I GCNNGC 1 cut(s) 465
CaiI CAGNNNCTG 1 cut(s) 552
CfoI GCGC 4 cut(s) 71, 365, 423, 631
Cfr10I RCCGGY 2 cut(s) 314, 463
Cfr13I GGNCC 3 cut(s) 58, 549, 951
Csp6I GTAC 1 cut(s) 643
CviAII CATG 2 cut(s) 265, 338
CviQI GTAC 1 cut(s) 643
DdeI CTNAG 3 cut(s) 277, 579, 897
DpnI GATC 4 cut(s) 12, 237, 392, 947
DpnII GATC 4 cut(s) 10, 235, 390, 945
DriI GACNNNNNGTC 1 cut(s) 172
EaeI YGGCCR 3 cut(s) 100, 316, 340
EagI CGGCCG 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 175
Eam1105I GACNNNNNGTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 175
EciI GGCGGA 3 cut(s) 112, 184, 262
Ecl136II GAGCTC 1 cut(s) 732
EclXI CGGCCG 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 734
Eco31I GGTCTC 1 cut(s) 274
Eco47I GGWCC 2 cut(s) 549, 951
Eco52I CGGCCG 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 732
Eco57I CTGAAG 1 cut(s) 816
Eco88I CYCGRG 2 cut(s) 397, 733
EcoICRI GAGCTC 1 cut(s) 732
EcoO109I RGGNCCY 1 cut(s) 549
EcoRII CCWGG 3 cut(s) 318, 551, 954
EcoT14I CCWWGG 1 cut(s) 337
EcoT38I GRGCYC 1 cut(s) 734
ErhI CCWWGG 1 cut(s) 337
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 2 cut(s) 268, 341
FaiI YATR 8 cut(s) 266, 339, 389, 534, 811, 817, 875, 905
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 264, 337
FauI CCCGC 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 103, 198
FokI GGATG 5 cut(s) 122, 443, 518, 569, 677
FriOI GRGCYC 1 cut(s) 734
Fsp4HI GCNGC 2 cut(s) 103, 198
FspAI RTGCGCAY 1 cut(s) 422
FspBI CTAG 1 cut(s) 525
FspI TGCGCA 1 cut(s) 422
GlaI GCGC 4 cut(s) 70, 364, 422, 630
GluI GCNGC 2 cut(s) 103, 198
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 5 cut(s) 60, 102, 216, 318, 342
HapII CCGG 3 cut(s) 315, 441, 464
HhaI GCGC 4 cut(s) 71, 365, 423, 631
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 2 cut(s) 268, 341
Hin6I GCGC 4 cut(s) 69, 363, 421, 629
HinP1I GCGC 4 cut(s) 69, 363, 421, 629
HinfI GANTC 5 cut(s) 20, 167, 254, 601, 738
HpaII CCGG 3 cut(s) 315, 441, 464
HphI GGTGA 3 cut(s) 145, 475, 952
Hpy166II GTNNAC 1 cut(s) 920
Hpy188I TCNGA 8 cut(s) 19, 97, 163, 235, 280, 475, 796, 846
Hpy188III TCNNGA 4 cut(s) 328, 503, 735, 949
Hpy8I GTNNAC 1 cut(s) 920
Hpy99I CGWCG 4 cut(s) 101, 311, 413, 494
HpyAV CCTTC 8 cut(s) 166, 206, 217, 253, 302, 415, 448, 848
HpyCH4III ACNGT 3 cut(s) 418, 871, 940
HpyCH4IV ACGT 2 cut(s) 306, 354
HpyCH4V TGCA 6 cut(s) 546, 576, 744, 826, 911, 920
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 111, 248, 917
HpyF3I CTNAG 3 cut(s) 277, 579, 897
HpySE526I ACGT 2 cut(s) 306, 354
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 2 cut(s) 268, 341
HspAI GCGC 4 cut(s) 69, 363, 421, 629
KroI GCCGGC 1 cut(s) 463
KroNI GCCGGC 1 cut(s) 465
Kzo9I GATC 4 cut(s) 10, 235, 390, 945
LmnI GCTCC 2 cut(s) 119, 515
LweI GCATC 2 cut(s) 547, 920
MaeI CTAG 1 cut(s) 525
MaeII ACGT 2 cut(s) 306, 354
MaeIII GTNAC 5 cut(s) 481, 569, 722, 763, 857
MalI GATC 4 cut(s) 12, 237, 392, 947
MboI GATC 4 cut(s) 10, 235, 390, 945
MboII GAAGA 6 cut(s) 162, 349, 741, 809, 847, 955
MflI RGATCY 2 cut(s) 10, 945
MhlI GDGCHC 2 cut(s) 734, 922
MlsI TGGCCA 1 cut(s) 342
MluCI AATT 5 cut(s) 86, 802, 821, 848, 906
MluNI TGGCCA 1 cut(s) 342
MlyI GAGTC 3 cut(s) 29, 161, 248
MmeI TCCRAC 2 cut(s) 120, 498
Mox20I TGGCCA 1 cut(s) 342
MroNI GCCGGC 1 cut(s) 463
MscI TGGCCA 1 cut(s) 342
MseI TTAA 3 cut(s) 84, 435, 621
Msp20I TGGCCA 1 cut(s) 342
MspI CCGG 3 cut(s) 315, 441, 464
MspR9I CCNGG 4 cut(s) 320, 442, 553, 956
MvaI CCWGG 3 cut(s) 320, 553, 956
MvnI CGCG 1 cut(s) 629
MwoI GCNNNNNNNGC 4 cut(s) 66, 111, 248, 917
NaeI GCCGGC 1 cut(s) 465
NciI CCSGG 1 cut(s) 442
NcoI CCATGG 1 cut(s) 337
NdeII GATC 4 cut(s) 10, 235, 390, 945
NgoMIV GCCGGC 1 cut(s) 463
NlaIII CATG 2 cut(s) 268, 341
NlaIV GGNNCC 5 cut(s) 12, 115, 403, 511, 953
NmeAIII GCCGAG 1 cut(s) 90
NmuCI GTSAC 5 cut(s) 481, 569, 722, 763, 857
NsbI TGCGCA 1 cut(s) 422
NspV TTCGAA 1 cut(s) 210
PaeR7I CTCGAG 1 cut(s) 733
PdiI GCCGGC 1 cut(s) 465
PfeI GAWTC 2 cut(s) 601, 738
PflFI GACNNNGTC 1 cut(s) 479
PkrI GCNGC 2 cut(s) 104, 199
PleI GAGTC 3 cut(s) 28, 161, 248
PpsI GAGTC 3 cut(s) 28, 161, 248
PpuMI RGGWCCY 1 cut(s) 549
Psp124BI GAGCTC 1 cut(s) 734
Psp5II RGGWCCY 1 cut(s) 549
Psp6I CCWGG 3 cut(s) 318, 551, 954
PspGI CCWGG 3 cut(s) 318, 551, 954
PspN4I GGNNCC 5 cut(s) 12, 115, 403, 511, 953
PspPI GGNCC 3 cut(s) 58, 549, 951
PspPPI RGGWCCY 1 cut(s) 549
PstNI CAGNNNCTG 1 cut(s) 552
PsuI RGATCY 2 cut(s) 10, 945
PsyI GACNNNGTC 1 cut(s) 479
RsaI GTAC 1 cut(s) 644
RsaNI GTAC 1 cut(s) 643
SacI GAGCTC 1 cut(s) 734
SaqAI TTAA 3 cut(s) 84, 435, 621
SatI GCNGC 2 cut(s) 103, 198
Sau3AI GATC 4 cut(s) 10, 235, 390, 945
Sau96I GGNCC 3 cut(s) 58, 549, 951
SchI GAGTC 3 cut(s) 29, 161, 248
ScrFI CCNGG 4 cut(s) 320, 442, 553, 956
SduI GDGCHC 2 cut(s) 734, 922
SfaNI GCATC 2 cut(s) 547, 920
Sfr274I CTCGAG 1 cut(s) 733
SfuI TTCGAA 1 cut(s) 210
SinI GGWCC 2 cut(s) 549, 951
SlaI CTCGAG 1 cut(s) 733
SmlI CTYRAG 1 cut(s) 733
SmoI CTYRAG 1 cut(s) 733
Sse9I AATT 5 cut(s) 86, 802, 821, 848, 906
SsiI CCGC 8 cut(s) 103, 123, 139, 195, 198, 259, 273, 486
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 1 cut(s) 734
StyD4I CCNGG 4 cut(s) 318, 440, 551, 954
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 3 cut(s) 418, 871, 940
TaiI ACGT 2 cut(s) 309, 357
TaqI TCGA 5 cut(s) 5, 210, 408, 492, 734
TasI AATT 5 cut(s) 86, 802, 821, 848, 906
TatI WGTACW 1 cut(s) 642
TauI GCSGC 2 cut(s) 105, 200
TfiI GAWTC 2 cut(s) 601, 738
Tru1I TTAA 3 cut(s) 84, 435, 621
Tru9I TTAA 3 cut(s) 84, 435, 621
TscAI CASTG 2 cut(s) 578, 874
TseFI GTSAC 5 cut(s) 481, 569, 722, 763, 857
Tsp45I GTSAC 5 cut(s) 481, 569, 722, 763, 857
TspDTI ATGAA 1 cut(s) 253
TspGWI ACGGA 1 cut(s) 878
TspRI CASTG 2 cut(s) 578, 874
Tth111I GACNNNGTC 1 cut(s) 479
VneI GTGCAC 1 cut(s) 918
VpaK11BI GGWCC 2 cut(s) 549, 951
XapI RAATTY 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 733
XspI CTAG 1 cut(s) 525
ZraI GACGTC 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.