Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002681

Physical Location & Seq

Genomic Coordinates Reverse (-)

8587827 .. 8588351

Gene Structure 525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16900

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGATGTTTGATAATTGGGAATGGGTTGTCCAGATTTGTGATAAAATCAATTGTGATAAATTGTGCCTCTGGGACGTGGAAACCGGCGACCTCATCAAAACCCTCCGCGGGCACACCAACTACGTCTTCTGCGCCAACTTCAATCCCCAGTCCAACATGATCGTCTCCGGCTCGTTCGACGAAACGGTGCGTATTTGGGATGTCAAGACGGGAAAGTGCCTCAAGGTGTTGCCGGCTCACTCCGATCCCGTCACGGCCGTTGATTTCAATCGGGACGGCTCGATTATCGTTTCGAGTAGCTACGATGGGCTGTGTAGGACCTGGGATGCTTCCACCGGGCATTGCACCAAGACTTTGATTGACGATGAGAATCCTCCGGTTTCGTTTGTCAAGTTCTCCCCTAATGGCAAGTTCATTCTTGTTGGCACTTTGGATAATACTCTGGTAAACCCTATTCTAAATCTTTTTTATGTTCAGTATCGTGGTTGGTTTCGAGTTGTCGGAATTTGTAGCTATGCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0005929 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0015630 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022008 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030182 GO:0031175 GO:0031248 GO:0031461 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034708 GO:0034968 GO:0035097 GO:0036064 GO:0036211 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0044665 GO:0044782 GO:0048188 GO:0048468 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051276 GO:0051568 GO:0060271 GO:0070013 GO:0070925 GO:0071339 GO:0071704 GO:0071840 GO:0080008 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

174

Amino Acids

19.69

Weight (kDa)

5.24

Isoelectric Point (pI)

20.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_IFT122_1st	PF23381	19 - 100	1.1e-07	IFT122 first beta-propeller
Beta-prop_EML_2	PF23414	19 - 115	1.3e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	19 - 112	4.1e-14	CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	20 - 149	6.1e-12	WDR36/Utp21 first beta-propeller
WD40_Prp19	PF24814	20 - 147	4e-24	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	20 - 148	1.5e-66	WDR5 beta-propeller domain
EIF3I	PF24805	20 - 79	5.5e-11	EIF3I
Beta-prop_WDR36-Utp21_2nd	PF25168	21 - 74	2.5e-08	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR41	PF25178	21 - 77	6.6e-06	WDR41
Beta-prop_WDR90_POC16_2nd	PF23393	21 - 115	1.6e-07	WDR90/POC16, second beta-propeller
WD40_MABP1-WDR62_1st	PF24780	21 - 97	1.4e-06	MABP1/WDR62 first WD40 domain
WD40_Gbeta	PF25391	21 - 144	2.2e-16	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	21 - 103	2.2e-20	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	22 - 148	9.6e-32	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	24 - 77	1.9e-09	WDHD1 first WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	28 - 118	4.6e-15	CAF1B/HIR1 beta-propeller domain
WD40	PF00400	30 - 67	4.4e-11	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	31 - 148	6.2e-17	WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	32 - 117	1.6e-11	TEP-1 second beta-propeller
WDR55	PF24796	41 - 131	5.6e-09	WDR55
WDR90_beta-prop_4th	PF23342	46 - 131	3.7e-07	WDR90, 4th beta-propeller
Beta-prop_EML_2	PF23414	47 - 148	6e-15	Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	49 - 108	3.1e-06	MABP1/WDR62 second WD40 domain
Beta-prop_EML	PF23409	55 - 149	1.7e-07	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	67 - 146	3.4e-08	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	71 - 109	8.4e-11	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	76 - 119	1.4e-06	WDHD1 first WD40 domain
EIF3I	PF24805	79 - 150	6.5e-06	EIF3I
Beta-prop_THOC3	PF25174	95 - 148	1e-06	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49660
fragaria_vesca	FvH4_1g18760
malus_domestica	MD01G1047000.v1.1 MD11G1213300.v1.1 MD15G1305300.v1.1 MD16G1282400.v1.1
prunus_persica	Prupe.6G211800_v2.0.a1
pyrus_communis	pycom01g07290 pycom15g26850 pycom16g25220
rosa_chinensis	RchiOBHm_Chr1g0324081 RchiOBHm_Chr2g0109631 RchiOBHm_Chr4g0412241 RchiOBHm_Chr7g0189251
rosa_laevigata	RLG00000017751 RLG00000018963 RLG00000020091 RLG00000024634 RLG00000029197 RLG00000032867 RLG00000034693 RLG00000035499
rosa_multiflora	Rmu_sc0000595.1_g000009 Rmu_sc0004483.1_g000044 Rmu_sc0010548.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113400 Rroxscaffold_2G00134080
rosa_rugosa	Rorug02G0161400
rosa_samantha	Rh1AG321900 Rh2AG213600 Rh2BG224000 Rh2CG215800 Rh2CG303700 Rh2DG219100 Rh5DG065100 Rh5DG130500 Rh7DG103300
rosa_wichuraiana	Rw1G015840 Rw2G032920 Rw2G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	108
AciI	CCGC	2 cut(s)	106, 108
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	504
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	2 cut(s)	142, 268
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	320
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	2 cut(s)	300, 513
AluI	AGCT	2 cut(s)	300, 513
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	1 cut(s)	255
ApoI	RAATTY	1 cut(s)	504
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	318
AsuC2I	CCSGG	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	318
BaeGI	GKGCMC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	118
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	3 cut(s)	242, 270, 292
BciT130I	CCWGG	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	169
Bme1390I	CCNGG	2 cut(s)	322, 337
Bme18I	GGWCC	1 cut(s)	318
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	318
BmrFI	CCNGG	2 cut(s)	322, 337
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	1 cut(s)	316
BmuI	ACTGGG	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	337
BsaBI	GATNNNNATC	2 cut(s)	267, 369
BsaJI	CCNNGG	2 cut(s)	106, 321
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	2 cut(s)	83, 232
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	340
Bse8I	GATNNNNATC	2 cut(s)	267, 369
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	2 cut(s)	106, 321
BseGI	GGATG	2 cut(s)	205, 331
BseJI	GATNNNNATC	2 cut(s)	267, 369
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	340
BseNI	ACTGG	1 cut(s)	148
BseSI	GKGCMC	1 cut(s)	114
BseX3I	CGGCCG	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	257
BsiEI	CGRYCG	1 cut(s)	258
BsiSI	CCGG	5 cut(s)	84, 168, 233, 336, 377
BslFI	GGGAC	2 cut(s)	86, 287
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	169
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	2 cut(s)	86, 287
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	159, 244
BspACI	CCGC	2 cut(s)	106, 108
BspANI	GGCC	1 cut(s)	257
BspFNI	CGCG	1 cut(s)	108
BspPI	GGATC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	340
BsrFI	RCCGGY	2 cut(s)	83, 232
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	2 cut(s)	83, 232
BssECI	CCNNGG	2 cut(s)	106, 321
BssMI	GATC	2 cut(s)	159, 244
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	110, 234
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	205, 331
BstFNI	CGCG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	2 cut(s)	162, 247
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	2 cut(s)	159, 244
BstMCI	CGRYCG	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	320, 335
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	1 cut(s)	108
BstV2I	GAAGAC	1 cut(s)	118
BstZI	CGGCCG	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	205, 331
Cac8I	GCNNGC	2 cut(s)	110, 234
CfoI	GCGC	1 cut(s)	134
Cfr10I	RCCGGY	2 cut(s)	83, 232
Cfr13I	GGNCC	1 cut(s)	318
Cfr42I	CCGCGG	1 cut(s)	109
CviAII	CATG	2 cut(s)	157, 520
CviJI	RGCY	7 cut(s)	171, 236, 257, 279, 300, 310, 513
CviKI_1	RGCY	7 cut(s)	171, 236, 257, 279, 300, 310, 513
DpnI	GATC	2 cut(s)	161, 246
DpnII	GATC	2 cut(s)	159, 244
EaeI	YGGCCR	1 cut(s)	255
EagI	CGGCCG	1 cut(s)	255
EclXI	CGGCCG	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	318
Eco52I	CGGCCG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	320
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	2 cut(s)	160, 523
FaiI	YATR	4 cut(s)	158, 471, 516, 521
FaqI	GGGAC	2 cut(s)	86, 287
FatI	CATG	2 cut(s)	156, 519
FauI	CCCGC	1 cut(s)	101
FokI	GGATG	2 cut(s)	212, 338
GlaI	GCGC	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	5 cut(s)	84, 168, 233, 336, 377
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	160, 523
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	5 cut(s)	84, 168, 233, 336, 377
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	2 cut(s)	244, 503
Hpy188III	TCNNGA	3 cut(s)	31, 205, 272
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	2 cut(s)	75, 123
HpyCH4V	TGCA	1 cut(s)	345
HpySE526I	ACGT	2 cut(s)	75, 123
Hsp92II	CATG	2 cut(s)	160, 523
HspAI	GCGC	1 cut(s)	132
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
KspI	CCGCGG	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	159, 244
LweI	GCATC	1 cut(s)	316
MaeII	ACGT	2 cut(s)	75, 123
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	2 cut(s)	161, 246
MboI	GATC	2 cut(s)	159, 244
MboII	GAAGA	1 cut(s)	118
MfeI	CAATTG	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	4 cut(s)	13, 49, 59, 504
MmeI	TCCRAC	2 cut(s)	177, 481
MnlI	CCTC	5 cut(s)	77, 101, 113, 230, 384
MroNI	GCCGGC	1 cut(s)	232
MspA1I	CMGCKG	1 cut(s)	108
MspI	CCGG	5 cut(s)	84, 168, 233, 336, 377
MspR9I	CCNGG	2 cut(s)	322, 337
MunI	CAATTG	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	1 cut(s)	108
NaeI	GCCGGC	1 cut(s)	234
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	2 cut(s)	159, 244
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	160, 523
NmuCI	GTSAC	1 cut(s)	250
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	318
PspPPI	RGGWCCY	1 cut(s)	318
SacII	CCGCGG	1 cut(s)	109
Sau3AI	GATC	2 cut(s)	159, 244
Sau96I	GGNCC	1 cut(s)	318
ScrFI	CCNGG	2 cut(s)	322, 337
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	7 cut(s)	78, 93, 126, 228, 302, 323, 515
SfaNI	GCATC	1 cut(s)	316
Sfr303I	CCGCGG	1 cut(s)	109
SgrBI	CCGCGG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	4 cut(s)	13, 49, 59, 504
SsiI	CCGC	2 cut(s)	106, 108
StyD4I	CCNGG	2 cut(s)	320, 335
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	2 cut(s)	78, 126
TaqI	TCGA	4 cut(s)	177, 281, 293, 493
TasI	AATT	4 cut(s)	13, 49, 59, 504
TfiI	GAWTC	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	318
XapI	RAATTY	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.