Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002681

Physical Location & Seq

Genomic Coordinates Forward (+)

60910680 .. 60913007

Gene Structure 2328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020091

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGACCTGCTTCCCAGGCCTGGCCAATTGGACCTCCGTGCCCCTACGACGCCATTAGATTCAATTCTCAGATCCCTCACCAGTCGGGGATTTGACAATCTAGATTTGTCTTTTTGTATTTGTTGTGATCTTGGTATGAATTGGTTGTGGCAGAGGTCCGATAATCGATCTAGATTTGGATTGATGTTGTTTGATGTTTCCCAGGCTGTGAGGATCAGGGTTAGGGCCTTGATTGGTGGTGGGATTTGCTGTGACTTCTCTTTTTTTGGAAGATGCGACGGCTTCCGGGATGGTTTTAAACTGCAGACGGTGACCGGGTTTTGGTTTTGTGGTCTGACTTTGTACACGAGATCGATCCCAATTGTGAATTGTTTGGATTGTTTGGTGTGCTGCATCTCTATTGCAGTCAATGGTGATGGTAATATCGATGGCGTCTCTATTGCCGGTGTTCTGGGTATGCAATGGGTTTTCTGGAGGATCGGCGATGGAGGAGATGAAAGGATTGAGTTTATGGCTGAATTGAAATTGATATTGAATACGGTTCTCTTGGTGGGCACAAGTAGTCAGACAATGATCGGCAGGCCAATAGTTCCAGATGCAGCAGTTCATGCAGTTGTTGAAGAGCATTTTCCGAGTGAAGATGAGGGTTCTGTAGCCAACTTTGGAGAAGAGAATAGAGAATCTAGCTTTATAAATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009566 GO:0009567 GO:0009987 GO:0010197 GO:0016043 GO:0019953 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0051704 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

234

Amino Acids

25.73

Weight (kDa)

4.69

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49660
fragaria_vesca	FvH4_1g18760
malus_domestica	MD01G1047000.v1.1 MD11G1213300.v1.1 MD15G1305300.v1.1 MD16G1282400.v1.1
prunus_persica	Prupe.6G211800_v2.0.a1
pyrus_communis	pycom01g07290 pycom15g26850 pycom16g25220
rosa_chinensis	RchiOBHm_Chr1g0324081 RchiOBHm_Chr2g0109631 RchiOBHm_Chr4g0412241 RchiOBHm_Chr7g0189251
rosa_laevigata	RLG00000017751 RLG00000018963 RLG00000020091 RLG00000024634 RLG00000029197 RLG00000032867 RLG00000034693 RLG00000035499
rosa_multiflora	Rmu_sc0000595.1_g000009 Rmu_sc0004483.1_g000044 Rmu_sc0010548.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113400 Rroxscaffold_2G00134080
rosa_rugosa	Rorug02G0161400
rosa_samantha	Rh1AG321900 Rh2AG213600 Rh2BG224000 Rh2CG215800 Rh2CG303700 Rh2DG219100 Rh5DG065100 Rh5DG130500 Rh7DG103300
rosa_wichuraiana	Rw1G015840 Rw2G032920 Rw2G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	692
Acc36I	ACCTGC	1 cut(s)	15
AclWI	GGATC	4 cut(s)	66, 221, 349, 485
AcoI	YGGCCR	1 cut(s)	22
AcyI	GRCGYC	2 cut(s)	50, 432
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	20, 321
AgsI	TTSAA	4 cut(s)	63, 523, 535, 620
AjnI	CCWGG	3 cut(s)	14, 19, 201
AluBI	AGCT	1 cut(s)	687
AluI	AGCT	1 cut(s)	687
Alw26I	GTCTC	1 cut(s)	439
AlwI	GGATC	4 cut(s)	66, 221, 349, 485
AoxI	GGCC	4 cut(s)	17, 22, 225, 581
ApeKI	GCWGC	2 cut(s)	390, 599
AspS9I	GGNCC	4 cut(s)	4, 31, 156, 225
AsuC2I	CCSGG	2 cut(s)	287, 316
AsuHPI	GGTGA	3 cut(s)	70, 322, 425
AvaII	GGWCC	3 cut(s)	4, 31, 156
BaeGI	GKGCMC	2 cut(s)	43, 557
BalI	TGGCCA	1 cut(s)	24
BauI	CACGAG	1 cut(s)	346
BbvI	GCAGC	2 cut(s)	377, 611
BccI	CCATC	4 cut(s)	284, 410, 422, 479
BceAI	ACGGC	1 cut(s)	295
BciT130I	CCWGG	3 cut(s)	16, 21, 203
BcnI	CCSGG	2 cut(s)	287, 316
BcoDI	GTCTC	1 cut(s)	439
BfaI	CTAG	3 cut(s)	101, 171, 684
BfmI	CTRYAG	2 cut(s)	302, 651
BfuAI	ACCTGC	1 cut(s)	15
BisI	GCNGC	2 cut(s)	391, 600
BlsI	GCNGC	2 cut(s)	392, 601
Bme1390I	CCNGG	5 cut(s)	16, 21, 203, 287, 316
Bme18I	GGWCC	3 cut(s)	4, 31, 156
BmgT120I	GGNCC	4 cut(s)	4, 31, 156, 225
BmrFI	CCNGG	5 cut(s)	16, 21, 203, 287, 316
BmsI	GCATC	3 cut(s)	263, 402, 586
BpmI	CTGGAG	1 cut(s)	493
BpuMI	CCSGG	2 cut(s)	287, 316
Bsa29I	ATCGAT	3 cut(s)	166, 353, 426
BsaHI	GRCGYC	2 cut(s)	50, 432
BsaJI	CCNNGG	2 cut(s)	14, 201
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 321
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	467
BseBI	CCWGG	3 cut(s)	16, 21, 203
BseCI	ATCGAT	3 cut(s)	166, 353, 426
BseDI	CCNNGG	2 cut(s)	14, 201
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	2 cut(s)	20, 321
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	504
BseSI	GKGCMC	2 cut(s)	43, 557
BseXI	GCAGC	2 cut(s)	377, 611
BshFI	GGCC	4 cut(s)	19, 24, 227, 583
BshVI	ATCGAT	3 cut(s)	166, 353, 426
BsiSI	CCGG	3 cut(s)	286, 315, 444
BslI	CCNNNNNNNGG	2 cut(s)	20, 321
BsmAI	GTCTC	1 cut(s)	439
BsmBI	CGTCTC	1 cut(s)	439
BsnI	GGCC	4 cut(s)	19, 24, 227, 583
Bsp1286I	GDGCHC	2 cut(s)	43, 557
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	8 cut(s)	71, 127, 167, 213, 350, 354, 477, 573
BspANI	GGCC	4 cut(s)	19, 24, 227, 583
BspCNI	CTCAG	1 cut(s)	81
BspDI	ATCGAT	3 cut(s)	166, 353, 426
BspMAI	CTGCAG	1 cut(s)	306
BspMI	ACCTGC	1 cut(s)	15
BspPI	GGATC	4 cut(s)	66, 221, 349, 485
BspQI	GCTCTTC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	467
BsrFI	RCCGGY	1 cut(s)	443
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	14, 201
BssMI	GATC	8 cut(s)	71, 127, 167, 213, 350, 354, 477, 573
BssNI	GRCGYC	2 cut(s)	50, 432
BssSI	CACGAG	1 cut(s)	346
Bst2BI	CACGAG	1 cut(s)	346
Bst2UI	CCWGG	3 cut(s)	16, 21, 203
Bst4CI	ACNGT	2 cut(s)	310, 541
Bst6I	CTCTTC	2 cut(s)	615, 663
BstACI	GRCGYC	2 cut(s)	50, 432
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	581
BstDEI	CTNAG	1 cut(s)	68
BstEII	GGTNACC	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	8 cut(s)	74, 130, 170, 216, 353, 357, 480, 576
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	8 cut(s)	71, 127, 167, 213, 350, 354, 477, 573
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 608
BstNI	CCWGG	3 cut(s)	16, 21, 203
BstPI	GGTNACC	1 cut(s)	310
BstSCI	CCNGG	5 cut(s)	14, 19, 201, 285, 314
BstSFI	CTRYAG	2 cut(s)	302, 651
BstSLI	GKGCMC	2 cut(s)	43, 557
BstV1I	GCAGC	2 cut(s)	377, 611
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
Bsu15I	ATCGAT	3 cut(s)	166, 353, 426
BsuRI	GGCC	4 cut(s)	19, 24, 227, 583
BsuTUI	ATCGAT	3 cut(s)	166, 353, 426
BtgZI	GCGATG	1 cut(s)	498
BtsCI	GGATG	1 cut(s)	295
BveI	ACCTGC	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	581
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	4 cut(s)	4, 31, 156, 225
ClaI	ATCGAT	3 cut(s)	166, 353, 426
CseI	GACGC	2 cut(s)	58, 421
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	1 cut(s)	608
CviJI	RGCY	9 cut(s)	19, 24, 206, 227, 282, 515, 583, 656, 687
CviKI_1	RGCY	9 cut(s)	19, 24, 206, 227, 282, 515, 583, 656, 687
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	8 cut(s)	73, 129, 169, 215, 352, 356, 479, 575
DpnII	GATC	8 cut(s)	71, 127, 167, 213, 350, 354, 477, 573
DraI	TTTAAA	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	22
Eam1104I	CTCTTC	2 cut(s)	615, 663
EarI	CTCTTC	2 cut(s)	615, 663
Eco147I	AGGCCT	1 cut(s)	19
Eco47I	GGWCC	3 cut(s)	4, 31, 156
Eco91I	GGTNACC	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	225
EcoO65I	GGTNACC	1 cut(s)	310
EcoRII	CCWGG	3 cut(s)	14, 19, 201
Esp3I	CGTCTC	1 cut(s)	439
FaeI	CATG	1 cut(s)	611
FaiI	YATR	6 cut(s)	137, 458, 512, 609, 692, 700
FatI	CATG	1 cut(s)	607
Fnu4HI	GCNGC	2 cut(s)	391, 600
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	2 cut(s)	391, 600
FspBI	CTAG	3 cut(s)	101, 171, 684
GluI	GCNGC	2 cut(s)	391, 600
GsuI	CTGGAG	1 cut(s)	493
HaeIII	GGCC	4 cut(s)	19, 24, 227, 583
HapII	CCGG	3 cut(s)	286, 315, 444
HgaI	GACGC	2 cut(s)	58, 421
Hin1I	GRCGYC	2 cut(s)	50, 432
Hin1II	CATG	1 cut(s)	611
HinfI	GANTC	2 cut(s)	59, 680
HpaII	CCGG	3 cut(s)	286, 315, 444
HphI	GGTGA	3 cut(s)	70, 322, 425
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	5 cut(s)	71, 160, 336, 567, 633
Hpy188III	TCNNGA	4 cut(s)	101, 171, 472, 593
Hpy8I	GTNNAC	1 cut(s)	345
Hpy99I	CGWCG	2 cut(s)	52, 281
HpyCH4III	ACNGT	2 cut(s)	310, 541
HpyCH4V	TGCA	6 cut(s)	304, 393, 404, 460, 599, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 608
HpyF3I	CTNAG	1 cut(s)	68
Hsp92I	GRCGYC	2 cut(s)	50, 432
Hsp92II	CATG	1 cut(s)	611
Kzo9I	GATC	8 cut(s)	71, 127, 167, 213, 350, 354, 477, 573
LguI	GCTCTTC	1 cut(s)	615
Lsp1109I	GCAGC	2 cut(s)	377, 611
LweI	GCATC	3 cut(s)	263, 402, 586
MaeI	CTAG	3 cut(s)	101, 171, 684
MaeIII	GTNAC	2 cut(s)	251, 310
MalI	GATC	8 cut(s)	73, 129, 169, 215, 352, 356, 479, 575
MboI	GATC	8 cut(s)	71, 127, 167, 213, 350, 354, 477, 573
MboII	GAAGA	4 cut(s)	282, 632, 650, 680
MfeI	CAATTG	2 cut(s)	26, 360
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	2 cut(s)	43, 557
MlsI	TGGCCA	1 cut(s)	24
MluCI	AATT	7 cut(s)	26, 63, 139, 360, 367, 518, 524
MluNI	TGGCCA	1 cut(s)	24
MnlI	CCTC	7 cut(s)	44, 86, 147, 204, 468, 482, 637
Mox20I	TGGCCA	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	24
MseI	TTAA	1 cut(s)	297
Msp20I	TGGCCA	1 cut(s)	24
MspI	CCGG	3 cut(s)	286, 315, 444
MspR9I	CCNGG	5 cut(s)	16, 21, 203, 287, 316
MunI	CAATTG	2 cut(s)	26, 360
MvaI	CCWGG	3 cut(s)	16, 21, 203
MwoI	GCNNNNNNNGC	2 cut(s)	16, 608
NciI	CCSGG	2 cut(s)	287, 316
NdeII	GATC	8 cut(s)	71, 127, 167, 213, 350, 354, 477, 573
NlaIII	CATG	1 cut(s)	611
NmuCI	GTSAC	2 cut(s)	251, 310
PceI	AGGCCT	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	615
PfeI	GAWTC	2 cut(s)	59, 680
PfoI	TCCNGGA	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	392, 601
PsiI	TTATAA	1 cut(s)	692
Psp6I	CCWGG	3 cut(s)	14, 19, 201
PspEI	GGTNACC	1 cut(s)	310
PspGI	CCWGG	3 cut(s)	14, 19, 201
PspPI	GGNCC	4 cut(s)	4, 31, 156, 225
PstI	CTGCAG	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	391, 600
Sau3AI	GATC	8 cut(s)	71, 127, 167, 213, 350, 354, 477, 573
Sau96I	GGNCC	4 cut(s)	4, 31, 156, 225
ScrFI	CCNGG	5 cut(s)	16, 21, 203, 287, 316
SduI	GDGCHC	2 cut(s)	43, 557
SetI	ASST	4 cut(s)	9, 36, 158, 689
SfaNI	GCATC	3 cut(s)	263, 402, 586
SfcI	CTRYAG	2 cut(s)	302, 651
SinI	GGWCC	3 cut(s)	4, 31, 156
Sse9I	AATT	7 cut(s)	26, 63, 139, 360, 367, 518, 524
SseBI	AGGCCT	1 cut(s)	19
SspMI	CTAG	3 cut(s)	101, 171, 684
StuI	AGGCCT	1 cut(s)	19
StyD4I	CCNGG	5 cut(s)	14, 19, 201, 285, 314
TaaI	ACNGT	2 cut(s)	310, 541
TaqI	TCGA	3 cut(s)	166, 353, 426
TasI	AATT	7 cut(s)	26, 63, 139, 360, 367, 518, 524
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	59, 680
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseFI	GTSAC	2 cut(s)	251, 310
TseI	GCWGC	2 cut(s)	390, 599
Tsp45I	GTSAC	2 cut(s)	251, 310
TspDTI	ATGAA	3 cut(s)	152, 510, 596
TspGWI	ACGGA	1 cut(s)	26
VpaK11BI	GGWCC	3 cut(s)	4, 31, 156
XbaI	TCTAGA	2 cut(s)	100, 170
XspI	CTAG	3 cut(s)	101, 171, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.