Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002681

Physical Location & Seq

Genomic Coordinates Reverse (-)

22068178 .. 22068879

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g26850.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAAGGTGCATTCCCACGCATTGGCCATCTCACTCACTCACTCACTCACTCTCCCTCCGAAAATCCTAAAGAACCGTCGAACACCTTCAAACCCTACACTCTGCGAAACCCTAACGGGCCACAAGAGCGCCATCTCCGGCGTCAAATTCTCCTCCGACGGCCGCCTCCTCGGCTTCGCCTCCGCCGACAAGACCATCCGCACCTACTCCCTCGTCTTCCGCGATGATTCTTCCACTCCCATCATCTCCCCCGCCCAGACCTTCGAAGGCCACTCCCAGGGCGTCTCAGATCTCGCCTTCTCCGCCGACTCTCGCTTCATGACCCTCCATGGCCACACCAACTACATCTTCTGCGCCAACTTCAACCCACTGTCCAACATAATCGTCTCGGGTTCCTTCGACGAAACGGTGCGTATATGGGATGTTAAGACCGGGAAATGCTTTAAGGTTTTGCCGGCTCACTCCGACCCCGTCACCACCGTCGATTTCAATCGGGATGGATCGGTTATCGTCTCCAGCAGCTATGATGGGTTGTGCAGGACCTGGGATGCCTCCACTGGTCACTGCACCAAGACATTGATCGATGATGAAAATCCTCCGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000123 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0005929 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009987 GO:0010228 GO:0015630 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022008 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030182 GO:0031175 GO:0031248 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034708 GO:0034968 GO:0035097 GO:0036064 GO:0036211 GO:0042393 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0044665 GO:0044782 GO:0048188 GO:0048468 GO:0048608 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051276 GO:0051568 GO:0060271 GO:0061458 GO:0070013 GO:0070925 GO:0071339 GO:0071704 GO:0071840 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

202

Amino Acids

21.89

Weight (kDa)

7.11

Isoelectric Point (pI)

27.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49660
fragaria_vesca	FvH4_1g18760
malus_domestica	MD01G1047000.v1.1 MD11G1213300.v1.1 MD15G1305300.v1.1 MD16G1282400.v1.1
prunus_persica	Prupe.6G211800_v2.0.a1
pyrus_communis	pycom01g07290 pycom15g26850 pycom16g25220
rosa_chinensis	RchiOBHm_Chr1g0324081 RchiOBHm_Chr2g0109631 RchiOBHm_Chr4g0412241 RchiOBHm_Chr7g0189251
rosa_laevigata	RLG00000017751 RLG00000018963 RLG00000020091 RLG00000024634 RLG00000029197 RLG00000032867 RLG00000034693 RLG00000035499
rosa_multiflora	Rmu_sc0000595.1_g000009 Rmu_sc0004483.1_g000044 Rmu_sc0010548.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113400 Rroxscaffold_2G00134080
rosa_rugosa	Rorug02G0161400
rosa_samantha	Rh1AG321900 Rh2AG213600 Rh2BG224000 Rh2CG215800 Rh2CG303700 Rh2DG219100 Rh5DG065100 Rh5DG130500 Rh7DG103300
rosa_wichuraiana	Rw1G015840 Rw2G032920 Rw2G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	22
AccII	CGCG	1 cut(s)	222
AciI	CCGC	6 cut(s)	163, 183, 199, 220, 252, 303
AclWI	GGATC	1 cut(s)	508
AcoI	YGGCCR	3 cut(s)	24, 160, 331
AcsI	RAATTY	1 cut(s)	146
AcyI	GRCGYC	2 cut(s)	141, 282
AfiI	CCNNNNNNNGG	2 cut(s)	22, 277
AgsI	TTSAA	3 cut(s)	90, 364, 490
AjnI	CCWGG	2 cut(s)	276, 542
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	1 cut(s)	522
AluI	AGCT	1 cut(s)	522
Alw26I	GTCTC	3 cut(s)	289, 391, 517
AlwI	GGATC	1 cut(s)	508
AlwNI	CAGNNNCTG	1 cut(s)	543
Ama87I	CYCGRG	1 cut(s)	388
AoxI	GGCC	5 cut(s)	24, 118, 160, 268, 331
ApeKI	GCWGC	1 cut(s)	519
ApoI	RAATTY	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	85
AspLEI	GCGC	2 cut(s)	131, 356
AspS9I	GGNCC	2 cut(s)	118, 540
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	466
AsuII	TTCGAA	1 cut(s)	264
AvaI	CYCGRG	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	540
BalI	TGGCCA	2 cut(s)	26, 333
BbsI	GAAGAC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	531
BccI	CCATC	6 cut(s)	35, 140, 203, 248, 491, 521
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	2 cut(s)	278, 544
BcnI	CCSGG	1 cut(s)	433
BcoDI	GTCTC	3 cut(s)	289, 391, 517
BfoI	RGCGCY	1 cut(s)	132
BglI	GCCNNNNNGGC	1 cut(s)	171
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	2 cut(s)	163, 520
BlsI	GCNGC	2 cut(s)	164, 521
Bme1390I	CCNGG	3 cut(s)	278, 433, 544
Bme18I	GGWCC	1 cut(s)	540
BmeT110I	CYCGRG	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	118, 540
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	3 cut(s)	278, 433, 544
BmsI	GCATC	1 cut(s)	538
BpiI	GAAGAC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	499
Bpu14I	TTCGAA	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	433
Bsa29I	ATCGAT	1 cut(s)	582
BsaBI	GATNNNNATC	2 cut(s)	489, 591
BsaHI	GRCGYC	2 cut(s)	141, 282
BsaJI	CCNNGG	5 cut(s)	169, 276, 277, 328, 543
BsaWI	WCCGGW	1 cut(s)	598
BsaXI	ACNNNNNCTCC	4 cut(s)	36, 40, 66, 70
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 277
Bse118I	RCCGGY	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	562
Bse8I	GATNNNNATC	2 cut(s)	489, 591
BseBI	CCWGG	2 cut(s)	278, 544
BseCI	ATCGAT	1 cut(s)	582
BseDI	CCNNGG	5 cut(s)	169, 276, 277, 328, 543
BseGI	GGATG	4 cut(s)	195, 427, 502, 553
BseJI	GATNNNNATC	2 cut(s)	489, 591
BseLI	CCNNNNNNNGG	2 cut(s)	22, 277
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	2 cut(s)	142, 158
BseX3I	CGGCCG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	531
BsgI	GTGCAG	2 cut(s)	550, 556
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	5 cut(s)	26, 120, 162, 270, 333
BshVI	ATCGAT	1 cut(s)	582
BsiEI	CGRYCG	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	4 cut(s)	138, 432, 455, 599
BslI	CCNNNNNNNGG	2 cut(s)	22, 277
BsmAI	GTCTC	3 cut(s)	289, 391, 517
BsmBI	CGTCTC	3 cut(s)	289, 391, 517
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	5 cut(s)	26, 120, 162, 270, 333
BsoBI	CYCGRG	1 cut(s)	388
Bsp119I	TTCGAA	1 cut(s)	264
Bsp143I	GATC	3 cut(s)	289, 500, 579
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	6 cut(s)	163, 183, 199, 220, 252, 303
BspANI	GGCC	5 cut(s)	26, 120, 162, 270, 333
BspCNI	CTCAG	1 cut(s)	299
BspDI	ATCGAT	1 cut(s)	582
BspFNI	CGCG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	394
BspPI	GGATC	1 cut(s)	508
BspT104I	TTCGAA	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	454
BsrI	ACTGG	1 cut(s)	562
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	5 cut(s)	169, 276, 277, 328, 543
BssMI	GATC	3 cut(s)	289, 500, 579
BssNI	GRCGYC	2 cut(s)	141, 282
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	2 cut(s)	278, 544
Bst4CI	ACNGT	4 cut(s)	77, 372, 409, 481
BstACI	GRCGYC	2 cut(s)	141, 282
BstBI	TTCGAA	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	1 cut(s)	286
BstDSI	CCRYGG	1 cut(s)	328
BstF5I	GGATG	4 cut(s)	195, 427, 502, 553
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	131, 356
BstKTI	GATC	3 cut(s)	292, 503, 582
BstMAI	GTCTC	3 cut(s)	289, 391, 517
BstMBI	GATC	3 cut(s)	289, 500, 579
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 171, 302
BstNI	CCWGG	2 cut(s)	278, 544
BstSCI	CCNGG	3 cut(s)	276, 431, 542
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	531
BstV2I	GAAGAC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BstZI	CGGCCG	1 cut(s)	160
Bsu15I	ATCGAT	1 cut(s)	582
BsuRI	GGCC	5 cut(s)	26, 120, 162, 270, 333
BsuTUI	ATCGAT	1 cut(s)	582
BtgI	CCRYGG	1 cut(s)	328
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	4 cut(s)	195, 427, 502, 553
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	3 cut(s)	368, 555, 562
Cac8I	GCNNGC	1 cut(s)	456
CaiI	CAGNNNCTG	1 cut(s)	543
CciI	TCATGA	1 cut(s)	318
CfoI	GCGC	2 cut(s)	131, 356
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	118, 540
ClaI	ATCGAT	1 cut(s)	582
CseI	GACGC	2 cut(s)	130, 271
CviAII	CATG	2 cut(s)	319, 329
CviJI	RGCY	8 cut(s)	26, 120, 162, 174, 270, 333, 458, 522
CviKI_1	RGCY	8 cut(s)	26, 120, 162, 174, 270, 333, 458, 522
DdeI	CTNAG	1 cut(s)	286
DpnI	GATC	3 cut(s)	291, 502, 581
DpnII	GATC	3 cut(s)	289, 500, 579
EaeI	YGGCCR	3 cut(s)	24, 160, 331
EagI	CGGCCG	1 cut(s)	160
EciI	GGCGGA	2 cut(s)	172, 292
EclXI	CGGCCG	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	540
Eco52I	CGGCCG	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRII	CCWGG	2 cut(s)	276, 542
EcoT14I	CCWWGG	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	328
Esp3I	CGTCTC	3 cut(s)	289, 391, 517
FaeI	CATG	2 cut(s)	322, 332
FaiI	YATR	6 cut(s)	320, 330, 380, 416, 418, 525
FatI	CATG	2 cut(s)	318, 328
FauI	CCCGC	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	163, 520
FokI	GGATG	4 cut(s)	182, 434, 509, 560
Fsp4HI	GCNGC	2 cut(s)	163, 520
GlaI	GCGC	2 cut(s)	130, 355
GluI	GCNGC	2 cut(s)	163, 520
GsuI	CTGGAG	1 cut(s)	499
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	5 cut(s)	26, 120, 162, 270, 333
HapII	CCGG	4 cut(s)	138, 432, 455, 599
HgaI	GACGC	2 cut(s)	130, 271
HhaI	GCGC	2 cut(s)	131, 356
Hin1I	GRCGYC	2 cut(s)	141, 282
Hin1II	CATG	2 cut(s)	322, 332
Hin6I	GCGC	2 cut(s)	129, 354
HinP1I	GCGC	2 cut(s)	129, 354
HinfI	GANTC	2 cut(s)	227, 308
HpaII	CCGG	4 cut(s)	138, 432, 455, 599
HphI	GGTGA	1 cut(s)	466
Hpy188I	TCNGA	4 cut(s)	60, 157, 289, 466
Hpy188III	TCNNGA	2 cut(s)	319, 494
Hpy99I	CGWCG	4 cut(s)	81, 161, 404, 485
HpyAV	CCTTC	5 cut(s)	96, 260, 271, 307, 406
HpyCH4III	ACNGT	4 cut(s)	77, 372, 409, 481
HpyCH4V	TGCA	3 cut(s)	10, 537, 567
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 171, 302
HpyF3I	CTNAG	1 cut(s)	286
Hsp92I	GRCGYC	2 cut(s)	141, 282
Hsp92II	CATG	2 cut(s)	322, 332
HspAI	GCGC	2 cut(s)	129, 354
KroI	GCCGGC	1 cut(s)	454
KroNI	GCCGGC	1 cut(s)	456
Kzo9I	GATC	3 cut(s)	289, 500, 579
Lsp1109I	GCAGC	1 cut(s)	531
LweI	GCATC	1 cut(s)	538
MaeIII	GTNAC	2 cut(s)	472, 560
MalI	GATC	3 cut(s)	291, 502, 581
MboI	GATC	3 cut(s)	289, 500, 579
MboII	GAAGA	3 cut(s)	208, 222, 340
MflI	RGATCY	1 cut(s)	289
MlsI	TGGCCA	2 cut(s)	26, 333
MluCI	AATT	1 cut(s)	146
MluNI	TGGCCA	2 cut(s)	26, 333
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	3 cut(s)	180, 399, 489
MnlI	CCTC	9 cut(s)	66, 163, 176, 179, 190, 221, 335, 562, 606
Mox20I	TGGCCA	2 cut(s)	26, 333
MroNI	GCCGGC	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	85
MscI	TGGCCA	2 cut(s)	26, 333
MseI	TTAA	2 cut(s)	426, 444
Msp20I	TGGCCA	2 cut(s)	26, 333
MspI	CCGG	4 cut(s)	138, 432, 455, 599
MspR9I	CCNGG	3 cut(s)	278, 433, 544
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	278, 544
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	126, 171, 302
NaeI	GCCGGC	1 cut(s)	456
NciI	CCSGG	1 cut(s)	433
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	3 cut(s)	289, 500, 579
NgoMIV	GCCGGC	1 cut(s)	454
NlaIII	CATG	2 cut(s)	322, 332
NlaIV	GGNNCC	1 cut(s)	394
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	2 cut(s)	472, 560
NspV	TTCGAA	1 cut(s)	264
PagI	TCATGA	1 cut(s)	318
PasI	CCCWGGG	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	2 cut(s)	183, 219
PctI	GAATGC	1 cut(s)	10
PdiI	GCCGGC	1 cut(s)	456
PdmI	GAANNNNTTC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	227
PflFI	GACNNNGTC	1 cut(s)	470
PflMI	CCANNNNNTGG	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	164, 521
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PpuMI	RGGWCCY	1 cut(s)	540
Psp5II	RGGWCCY	1 cut(s)	540
Psp6I	CCWGG	2 cut(s)	276, 542
PspGI	CCWGG	2 cut(s)	276, 542
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	2 cut(s)	118, 540
PspPPI	RGGWCCY	1 cut(s)	540
PstNI	CAGNNNCTG	1 cut(s)	543
PsuI	RGATCY	1 cut(s)	289
PsyI	GACNNNGTC	1 cut(s)	470
SaqAI	TTAA	2 cut(s)	426, 444
SatI	GCNGC	2 cut(s)	163, 520
Sau3AI	GATC	3 cut(s)	289, 500, 579
Sau96I	GGNCC	2 cut(s)	118, 540
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	3 cut(s)	278, 433, 544
SetI	ASST	7 cut(s)	9, 88, 206, 263, 450, 524, 545
SfaNI	GCATC	1 cut(s)	538
SfuI	TTCGAA	1 cut(s)	264
SinI	GGWCC	1 cut(s)	540
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	6 cut(s)	163, 183, 199, 220, 252, 303
StyD4I	CCNGG	3 cut(s)	276, 431, 542
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	4 cut(s)	77, 372, 409, 481
TaqI	TCGA	5 cut(s)	79, 264, 399, 483, 582
TasI	AATT	1 cut(s)	146
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	426, 444
Tru9I	TTAA	2 cut(s)	426, 444
TscAI	CASTG	3 cut(s)	375, 562, 569
TseFI	GTSAC	2 cut(s)	472, 560
TseI	GCWGC	1 cut(s)	519
Tsp45I	GTSAC	2 cut(s)	472, 560
TspDTI	ATGAA	3 cut(s)	17, 307, 603
TspRI	CASTG	3 cut(s)	375, 562, 569
Tth111I	GACNNNGTC	1 cut(s)	470
Van91I	CCANNNNNTGG	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	540
XapI	RAATTY	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.