Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002681

Physical Location & Seq

Genomic Coordinates Reverse (-)

67729817 .. 67730338

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035499

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGACCTGCTTCCCAAGCCTGGCCAATCGGACCTCCGTGCCCCTACGACGCCATTTGATTCAATTCTCAGATCCCTCACTAGTCGGGGATTTGACAATCCAGATTTGTCTTTTTGTATTTGTTGTGATCTTGGTATGAATTGGTTGTGGCAGAGATGTGACGGCTTCGGGGATGGTTTTAAACTGCAGACGGCGACCGGGTTTTGGTTTTGTGGTATGACTTTGTACACGAGATCGGTCCCGATTGTGAATTGTTTAGATTGCTTGGTGTGCTGCATCTCTATTGCCGTCAATGGTGATGATAATGTCGATGGCGTCCTACGTGCGGTGTTCTGGGTATGCAATGGGTTTTCTGGAGGATCGGCGATGGAGGAGATGAAAGGATTGAGTTTATGGCTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.75

Weight (kDa)

4.38

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49660
fragaria_vesca	FvH4_1g18760
malus_domestica	MD01G1047000.v1.1 MD11G1213300.v1.1 MD15G1305300.v1.1 MD16G1282400.v1.1
prunus_persica	Prupe.6G211800_v2.0.a1
pyrus_communis	pycom01g07290 pycom15g26850 pycom16g25220
rosa_chinensis	RchiOBHm_Chr1g0324081 RchiOBHm_Chr2g0109631 RchiOBHm_Chr4g0412241 RchiOBHm_Chr7g0189251
rosa_laevigata	RLG00000017751 RLG00000018963 RLG00000020091 RLG00000024634 RLG00000029197 RLG00000032867 RLG00000034693 RLG00000035499
rosa_multiflora	Rmu_sc0000595.1_g000009 Rmu_sc0004483.1_g000044 Rmu_sc0010548.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113400 Rroxscaffold_2G00134080
rosa_rugosa	Rorug02G0161400
rosa_samantha	Rh1AG321900 Rh2AG213600 Rh2BG224000 Rh2CG215800 Rh2CG303700 Rh2DG219100 Rh5DG065100 Rh5DG130500 Rh7DG103300
rosa_wichuraiana	Rw1G015840 Rw2G032920 Rw2G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	15
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	2 cut(s)	66, 367
AcoI	YGGCCR	1 cut(s)	22
AcyI	GRCGYC	2 cut(s)	50, 315
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	3 cut(s)	20, 204, 325
AgsI	TTSAA	1 cut(s)	63
AhlI	ACTAGT	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	19
AlwI	GGATC	2 cut(s)	66, 367
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	273
AspS9I	GGNCC	3 cut(s)	4, 31, 238
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	308
AvaII	GGWCC	3 cut(s)	4, 31, 238
BaeGI	GKGCMC	1 cut(s)	43
BalI	TGGCCA	1 cut(s)	24
BauI	CACGAG	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	3 cut(s)	167, 305, 361
BceAI	ACGGC	3 cut(s)	178, 207, 272
BciT130I	CCWGG	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	199
BcuI	ACTAGT	1 cut(s)	80
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	275
Bme1390I	CCNGG	2 cut(s)	21, 199
Bme18I	GGWCC	3 cut(s)	4, 31, 238
BmgT120I	GGNCC	3 cut(s)	4, 31, 238
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	21, 199
BmsI	GCATC	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	323
BsaHI	GRCGYC	2 cut(s)	50, 315
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 204, 325
Bse3DI	GCAATG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	3 cut(s)	20, 204, 325
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	386
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	3 cut(s)	20, 204, 325
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	71, 127, 233, 359
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	15
BspPI	GGATC	2 cut(s)	66, 367
BsrDI	GCAATG	1 cut(s)	349
BsrGI	TGTACA	1 cut(s)	225
BssMI	GATC	4 cut(s)	71, 127, 233, 359
BssNI	GRCGYC	2 cut(s)	50, 315
BssSI	CACGAG	1 cut(s)	229
Bst2BI	CACGAG	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	21
BstACI	GRCGYC	2 cut(s)	50, 315
BstAUI	TGTACA	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	4 cut(s)	74, 130, 236, 362
BstMBI	GATC	4 cut(s)	71, 127, 233, 359
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 270
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	2 cut(s)	19, 197
BstSFI	CTRYAG	1 cut(s)	185
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	24
BtgZI	GCGATG	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	178
BveI	ACCTGC	1 cut(s)	15
Cfr13I	GGNCC	3 cut(s)	4, 31, 238
CseI	GACGC	2 cut(s)	58, 304
Csp6I	GTAC	1 cut(s)	226
CviJI	RGCY	4 cut(s)	19, 24, 165, 397
CviKI_1	RGCY	4 cut(s)	19, 24, 165, 397
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	4 cut(s)	73, 129, 235, 361
DpnII	GATC	4 cut(s)	71, 127, 233, 359
DraI	TTTAAA	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	22
Eco47I	GGWCC	3 cut(s)	4, 31, 238
EcoRII	CCWGG	1 cut(s)	19
FaiI	YATR	4 cut(s)	137, 218, 340, 394
FaqI	GGGAC	1 cut(s)	224
Fnu4HI	GCNGC	1 cut(s)	274
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	274
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	1 cut(s)	274
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	1 cut(s)	198
HgaI	GACGC	2 cut(s)	58, 304
Hin1I	GRCGYC	2 cut(s)	50, 315
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	31, 71
Hpy188III	TCNNGA	3 cut(s)	101, 241, 354
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	3 cut(s)	187, 276, 342
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 270
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	322
Hsp92I	GRCGYC	2 cut(s)	50, 315
Kzo9I	GATC	4 cut(s)	71, 127, 233, 359
LpnPI	CCDG	7 cut(s)	6, 20, 33, 114, 211, 319, 339
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	4 cut(s)	73, 129, 235, 361
MboI	GATC	4 cut(s)	71, 127, 233, 359
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	24
MluCI	AATT	4 cut(s)	63, 139, 250, 400
MluNI	TGGCCA	1 cut(s)	24
MnlI	CCTC	4 cut(s)	44, 86, 350, 364
Mox20I	TGGCCA	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	24
MseI	TTAA	1 cut(s)	180
Msp20I	TGGCCA	1 cut(s)	24
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	2 cut(s)	21, 199
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	16, 270
NciI	CCSGG	1 cut(s)	199
NdeII	GATC	4 cut(s)	71, 127, 233, 359
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	3 cut(s)	4, 31, 238
PstI	CTGCAG	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	4 cut(s)	71, 127, 233, 359
Sau96I	GGNCC	3 cut(s)	4, 31, 238
ScrFI	CCNGG	2 cut(s)	21, 199
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	3 cut(s)	9, 36, 325
SfaNI	GCATC	1 cut(s)	285
SfcI	CTRYAG	1 cut(s)	185
SinI	GGWCC	3 cut(s)	4, 31, 238
SpeI	ACTAGT	1 cut(s)	80
Sse9I	AATT	4 cut(s)	63, 139, 250, 400
SsiI	CCGC	1 cut(s)	326
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	19, 197
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	309
TaqII	GACCGA	1 cut(s)	226
TasI	AATT	4 cut(s)	63, 139, 250, 400
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	1 cut(s)	273
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	152, 392
TspGWI	ACGGA	1 cut(s)	26
VpaK11BI	GGWCC	3 cut(s)	4, 31, 238
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.