RLG00000029197

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002681
Physical Location & Seq
Reverse (-)
34359049 .. 34359576
528 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029197

Sequence Viewer

Length: 450 bp
ATGGACCTGCTTCCCAGGCCTGGCCAATCGGACCTCCGTGCCCCTACGACGCCATTTGATTCAATTCTCAGATCCCTCACCAGTAATCAATCCAGATTTGGATTGATGTTGTTTGAGGTTTCCCAAGCTGTGAGGATCGGGGTTAGGGCCTTGATTGGTGGTGGGATTTGCTGTGACTTCTCTTTTTTTGGAAGATGCGACGGCTTCGGGGATGGTTTTAAACTGCAGACGGCGACCGGGTTTTGGTTTTGTGGTCTAACTTTGTACATGAGATCAATCCCGATTATGAATTGTTTGGATTGCTTGGTGTGCTGCATCTCTATTGCCGTCAATGGTGATGGTAATATCGACGGCGTCCTACATGTCCGGTGTTCTGGGTATGCAATTAATGGGTTTTCTGGAGGATCGGCGATGGAGAAGATGAAAGGATTGAGTTTATGGCTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.08

Weight (kDa)

7.48

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 15
AclWI GGATC 3 cut(s) 66, 143, 412
AcoI YGGCCR 1 cut(s) 22
AcyI GRCGYC 2 cut(s) 50, 354
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 2 cut(s) 20, 243
AflIII ACRYGT 1 cut(s) 361
AgsI TTSAA 1 cut(s) 63
AjnI CCWGG 2 cut(s) 14, 19
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AlwI GGATC 3 cut(s) 66, 143, 412
AoxI GGCC 3 cut(s) 17, 22, 147
ApeKI GCWGC 1 cut(s) 312
AseI ATTAAT 1 cut(s) 387
AspS9I GGNCC 3 cut(s) 4, 31, 147
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 2 cut(s) 70, 347
AvaII GGWCC 2 cut(s) 4, 31
BaeGI GKGCMC 1 cut(s) 43
BalI TGGCCA 1 cut(s) 24
BbvI GCAGC 1 cut(s) 299
BccI CCATC 3 cut(s) 206, 332, 406
BceAI ACGGC 4 cut(s) 217, 246, 311, 367
BciT130I CCWGG 2 cut(s) 16, 21
BcnI CCSGG 1 cut(s) 238
BfmI CTRYAG 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 15
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
Bme1390I CCNGG 3 cut(s) 16, 21, 238
Bme18I GGWCC 2 cut(s) 4, 31
BmgT120I GGNCC 3 cut(s) 4, 31, 147
BmrFI CCNGG 3 cut(s) 16, 21, 238
BmsI GCATC 2 cut(s) 185, 324
BpmI CTGGAG 1 cut(s) 420
BpuMI CCSGG 1 cut(s) 238
BsaHI GRCGYC 2 cut(s) 50, 354
BsaJI CCNNGG 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 366
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 243
Bse1I ACTGG 1 cut(s) 81
BseBI CCWGG 2 cut(s) 16, 21
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 2 cut(s) 20, 243
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 81
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 1 cut(s) 299
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 3 cut(s) 19, 24, 149
BsiEI CGRYCG 1 cut(s) 237
BsiSI CCGG 2 cut(s) 237, 367
BslI CCNNNNNNNGG 2 cut(s) 20, 243
BsnI GGCC 3 cut(s) 19, 24, 149
Bsp1286I GDGCHC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 4 cut(s) 71, 135, 272, 404
BspANI GGCC 3 cut(s) 19, 24, 149
BspCNI CTCAG 1 cut(s) 81
BspMAI CTGCAG 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 15
BspPI GGATC 3 cut(s) 66, 143, 412
BsrGI TGTACA 1 cut(s) 264
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 4 cut(s) 71, 135, 272, 404
BssNI GRCGYC 2 cut(s) 50, 354
Bst2UI CCWGG 2 cut(s) 16, 21
BstACI GRCGYC 2 cut(s) 50, 354
BstAUI TGTACA 1 cut(s) 264
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 4 cut(s) 74, 138, 275, 407
BstMBI GATC 4 cut(s) 71, 135, 272, 404
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 2 cut(s) 16, 309
BstNI CCWGG 2 cut(s) 16, 21
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 14, 19, 236
BstSFI CTRYAG 1 cut(s) 224
BstSLI GKGCMC 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 3 cut(s) 19, 24, 149
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 1 cut(s) 217
BveI ACCTGC 1 cut(s) 15
Cfr13I GGNCC 3 cut(s) 4, 31, 147
CseI GACGC 2 cut(s) 58, 343
Csp6I GTAC 1 cut(s) 265
CviAII CATG 2 cut(s) 268, 362
CviJI RGCY 6 cut(s) 19, 24, 128, 149, 204, 442
CviKI_1 RGCY 6 cut(s) 19, 24, 128, 149, 204, 442
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 1 cut(s) 68
DpnI GATC 4 cut(s) 73, 137, 274, 406
DpnII GATC 4 cut(s) 71, 135, 272, 404
DraI TTTAAA 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 22
Eco147I AGGCCT 1 cut(s) 19
Eco47I GGWCC 2 cut(s) 4, 31
EcoO109I RGGNCCY 1 cut(s) 147
EcoRII CCWGG 2 cut(s) 14, 19
FaeI CATG 2 cut(s) 271, 365
FaiI YATR 5 cut(s) 269, 287, 363, 381, 439
FatI CATG 2 cut(s) 267, 361
Fnu4HI GCNGC 1 cut(s) 313
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 313
GluI GCNGC 1 cut(s) 313
GsuI CTGGAG 1 cut(s) 420
HaeIII GGCC 3 cut(s) 19, 24, 149
HapII CCGG 2 cut(s) 237, 367
HgaI GACGC 2 cut(s) 58, 343
Hin1I GRCGYC 2 cut(s) 50, 354
Hin1II CATG 2 cut(s) 271, 365
HinfI GANTC 1 cut(s) 59
HpaII CCGG 2 cut(s) 237, 367
HphI GGTGA 2 cut(s) 70, 347
Hpy188I TCNGA 2 cut(s) 31, 71
Hpy188III TCNNGA 3 cut(s) 93, 280, 399
Hpy99I CGWCG 3 cut(s) 52, 203, 353
HpyCH4V TGCA 3 cut(s) 226, 315, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 309
HpyF3I CTNAG 1 cut(s) 68
Hsp92I GRCGYC 2 cut(s) 50, 354
Hsp92II CATG 2 cut(s) 271, 365
Kzo9I GATC 4 cut(s) 71, 135, 272, 404
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 2 cut(s) 185, 324
MaeIII GTNAC 1 cut(s) 173
MalI GATC 4 cut(s) 73, 137, 274, 406
MboI GATC 4 cut(s) 71, 135, 272, 404
MboII GAAGA 2 cut(s) 204, 430
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 24
MluCI AATT 4 cut(s) 63, 289, 384, 445
MluNI TGGCCA 1 cut(s) 24
MnlI CCTC 5 cut(s) 44, 86, 109, 126, 395
Mox20I TGGCCA 1 cut(s) 24
MscI TGGCCA 1 cut(s) 24
MseI TTAA 2 cut(s) 219, 387
Msp20I TGGCCA 1 cut(s) 24
MspI CCGG 2 cut(s) 237, 367
MspR9I CCNGG 3 cut(s) 16, 21, 238
MvaI CCWGG 2 cut(s) 16, 21
MwoI GCNNNNNNNGC 2 cut(s) 16, 309
NciI CCSGG 1 cut(s) 238
NdeII GATC 4 cut(s) 71, 135, 272, 404
NlaIII CATG 2 cut(s) 271, 365
NmuCI GTSAC 1 cut(s) 173
NspI RCATGY 1 cut(s) 365
PceI AGGCCT 1 cut(s) 19
PciI ACATGT 1 cut(s) 361
PfeI GAWTC 1 cut(s) 59
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 1 cut(s) 314
PscI ACATGT 1 cut(s) 361
PshBI ATTAAT 1 cut(s) 387
Psp6I CCWGG 2 cut(s) 14, 19
PspGI CCWGG 2 cut(s) 14, 19
PspPI GGNCC 3 cut(s) 4, 31, 147
PstI CTGCAG 1 cut(s) 228
PsuI RGATCY 1 cut(s) 71
PsyI GACNNNGTC 1 cut(s) 353
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SaqAI TTAA 2 cut(s) 219, 387
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 4 cut(s) 71, 135, 272, 404
Sau96I GGNCC 3 cut(s) 4, 31, 147
ScrFI CCNGG 3 cut(s) 16, 21, 238
SduI GDGCHC 1 cut(s) 43
SetI ASST 4 cut(s) 9, 36, 120, 130
SfaNI GCATC 2 cut(s) 185, 324
SfcI CTRYAG 1 cut(s) 224
SinI GGWCC 2 cut(s) 4, 31
Sse9I AATT 4 cut(s) 63, 289, 384, 445
SseBI AGGCCT 1 cut(s) 19
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 3 cut(s) 14, 19, 236
TaqI TCGA 1 cut(s) 348
TasI AATT 4 cut(s) 63, 289, 384, 445
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 219, 387
Tru9I TTAA 2 cut(s) 219, 387
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 312
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 302, 437
TspGWI ACGGA 1 cut(s) 26
Tth111I GACNNNGTC 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 4, 31
VspI ATTAAT 1 cut(s) 387
XceI RCATGY 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.