RLG00000034693

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002681
Physical Location & Seq
Reverse (-)
51455415 .. 51455974
560 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034693

Sequence Viewer

Length: 441 bp
ATGGACCTGCTTCCCAGGCCTGGCCAATCGGACCTCCGTGGCCCTACGACGCCCTTTGATTTGATTCTCAGATCCCTCACTAGTCGGGGATTTGACAATCTAGATTTGTCTTTTTGTATTTGTTGTGATCTTGGTCTGAATTGGCTGTGGCGGAGGTCTGATGGCTTTTTTTCTGGAAGATGTGGCATAATCGGGACCGTCTCTTTTTCTGGAAGATGCAACCGCTTCGGGGATGGTTTTGAACTGGAGACGGTGACAGGGTTTTGGTTTTATGGTCTGACTTTGTACACGAGATCGGTCCCGATTGTGAATTGTTTGGATTGCTTGGTGTGCTGTATCTTTATTGCCGTCAATGGTGATGGTAATATCGATGGTGTCCTACATGTTCGGTGTTCTGGGTATGCAATGGGTTTTCTGGATGGTCGGCGGTGGAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.37

Weight (kDa)

7.47

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 15
AciI CCGC 3 cut(s) 151, 223, 427
AclWI GGATC 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 2 cut(s) 20, 229
AflIII ACRYGT 1 cut(s) 382
AgsI TTSAA 1 cut(s) 242
AhlI ACTAGT 1 cut(s) 80
AjnI CCWGG 2 cut(s) 14, 19
Alw26I GTCTC 2 cut(s) 205, 242
AlwI GGATC 1 cut(s) 66
AoxI GGCC 3 cut(s) 17, 22, 40
AspS9I GGNCC 5 cut(s) 4, 31, 41, 195, 298
AsuHPI GGTGA 2 cut(s) 265, 368
AvaII GGWCC 4 cut(s) 4, 31, 195, 298
BalI TGGCCA 1 cut(s) 24
BauI CACGAG 1 cut(s) 289
BccI CCATC 5 cut(s) 155, 227, 353, 365, 413
BceAI ACGGC 1 cut(s) 332
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 2 cut(s) 16, 21
BcoDI GTCTC 2 cut(s) 205, 242
BcuI ACTAGT 1 cut(s) 80
BfaI CTAG 2 cut(s) 81, 101
BfuAI ACCTGC 1 cut(s) 15
Bme1390I CCNGG 2 cut(s) 16, 21
Bme18I GGWCC 4 cut(s) 4, 31, 195, 298
BmgT120I GGNCC 5 cut(s) 4, 31, 41, 195, 298
BmiI GGNNCC 2 cut(s) 196, 300
BmrFI CCNGG 2 cut(s) 16, 21
BmsI GCATC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 266
Bsa29I ATCGAT 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 14, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 229
Bse1I ACTGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 411
BseBI CCWGG 2 cut(s) 16, 21
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 14, 37
BseGI GGATG 2 cut(s) 238, 424
BseLI CCNNNNNNNGG 2 cut(s) 20, 229
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 249
BshFI GGCC 3 cut(s) 19, 24, 42
BshVI ATCGAT 1 cut(s) 369
BslFI GGGAC 2 cut(s) 208, 284
BslI CCNNNNNNNGG 2 cut(s) 20, 229
BsmAI GTCTC 2 cut(s) 205, 242
BsmBI CGTCTC 2 cut(s) 205, 242
BsmFI GGGAC 2 cut(s) 208, 284
BsnI GGCC 3 cut(s) 19, 24, 42
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 3 cut(s) 71, 127, 293
BspACI CCGC 3 cut(s) 151, 223, 427
BspANI GGCC 3 cut(s) 19, 24, 42
BspCNI CTCAG 1 cut(s) 81
BspDI ATCGAT 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 196, 300
BspMI ACCTGC 1 cut(s) 15
BspPI GGATC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 411
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 14, 37
BssMI GATC 3 cut(s) 71, 127, 293
BssNI GRCGYC 1 cut(s) 50
BssSI CACGAG 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 289
Bst2UI CCWGG 2 cut(s) 16, 21
Bst4CI ACNGT 2 cut(s) 199, 253
BstACI GRCGYC 1 cut(s) 50
BstAUI TGTACA 1 cut(s) 285
BstDEI CTNAG 1 cut(s) 68
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 2 cut(s) 238, 424
BstKTI GATC 3 cut(s) 74, 130, 296
BstMAI GTCTC 2 cut(s) 205, 242
BstMBI GATC 3 cut(s) 71, 127, 293
BstMWI GCNNNNNNNGC 2 cut(s) 16, 330
BstNI CCWGG 2 cut(s) 16, 21
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 2 cut(s) 14, 19
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
Bsu15I ATCGAT 1 cut(s) 369
BsuRI GGCC 3 cut(s) 19, 24, 42
BsuTUI ATCGAT 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 2 cut(s) 238, 424
BveI ACCTGC 1 cut(s) 15
Cfr13I GGNCC 5 cut(s) 4, 31, 41, 195, 298
ClaI ATCGAT 1 cut(s) 369
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 286
CviAII CATG 1 cut(s) 383
CviJI RGCY 5 cut(s) 19, 24, 42, 145, 165
CviKI_1 RGCY 5 cut(s) 19, 24, 42, 145, 165
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 68
DpnI GATC 3 cut(s) 73, 129, 295
DpnII GATC 3 cut(s) 71, 127, 293
EaeI YGGCCR 1 cut(s) 22
EciI GGCGGA 1 cut(s) 166
Eco147I AGGCCT 1 cut(s) 19
Eco47I GGWCC 4 cut(s) 4, 31, 195, 298
EcoRII CCWGG 2 cut(s) 14, 19
Esp3I CGTCTC 2 cut(s) 205, 242
FaeI CATG 1 cut(s) 386
FaiI YATR 4 cut(s) 188, 273, 384, 402
FaqI GGGAC 2 cut(s) 208, 284
FatI CATG 1 cut(s) 382
FokI GGATG 2 cut(s) 245, 431
FspBI CTAG 2 cut(s) 81, 101
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 3 cut(s) 19, 24, 42
HgaI GACGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 1 cut(s) 386
HinfI GANTC 1 cut(s) 64
HphI GGTGA 2 cut(s) 265, 368
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 5 cut(s) 31, 71, 138, 160, 279
Hpy188III TCNNGA 6 cut(s) 101, 174, 193, 210, 301, 416
Hpy8I GTNNAC 1 cut(s) 288
Hpy99I CGWCG 1 cut(s) 52
HpyCH4III ACNGT 2 cut(s) 199, 253
HpyCH4V TGCA 2 cut(s) 219, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 330
HpyF3I CTNAG 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 1 cut(s) 386
Kzo9I GATC 3 cut(s) 71, 127, 293
LweI GCATC 1 cut(s) 206
MaeI CTAG 2 cut(s) 81, 101
MaeIII GTNAC 1 cut(s) 253
MalI GATC 3 cut(s) 73, 129, 295
MboI GATC 3 cut(s) 71, 127, 293
MboII GAAGA 2 cut(s) 189, 225
MflI RGATCY 1 cut(s) 71
MlsI TGGCCA 1 cut(s) 24
MluCI AATT 2 cut(s) 139, 310
MluNI TGGCCA 1 cut(s) 24
MnlI CCTC 4 cut(s) 44, 86, 147, 426
Mox20I TGGCCA 1 cut(s) 24
MscI TGGCCA 1 cut(s) 24
Msp20I TGGCCA 1 cut(s) 24
MspR9I CCNGG 2 cut(s) 16, 21
MvaI CCWGG 2 cut(s) 16, 21
MwoI GCNNNNNNNGC 2 cut(s) 16, 330
NdeII GATC 3 cut(s) 71, 127, 293
NlaIII CATG 1 cut(s) 386
NlaIV GGNNCC 2 cut(s) 196, 300
NmuCI GTSAC 1 cut(s) 253
NspI RCATGY 1 cut(s) 386
PceI AGGCCT 1 cut(s) 19
PciI ACATGT 1 cut(s) 382
PfeI GAWTC 1 cut(s) 64
PscI ACATGT 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 14, 19
PspGI CCWGG 2 cut(s) 14, 19
PspN4I GGNNCC 2 cut(s) 196, 300
PspPI GGNCC 5 cut(s) 4, 31, 41, 195, 298
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
Sau3AI GATC 3 cut(s) 71, 127, 293
Sau96I GGNCC 5 cut(s) 4, 31, 41, 195, 298
ScrFI CCNGG 2 cut(s) 16, 21
SetI ASST 3 cut(s) 9, 36, 158
SfaNI GCATC 1 cut(s) 206
SinI GGWCC 4 cut(s) 4, 31, 195, 298
SpeI ACTAGT 1 cut(s) 80
Sse9I AATT 2 cut(s) 139, 310
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 3 cut(s) 151, 223, 427
SspMI CTAG 2 cut(s) 81, 101
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 2 cut(s) 14, 19
TaaI ACNGT 2 cut(s) 199, 253
TaqI TCGA 1 cut(s) 369
TaqII GACCGA 1 cut(s) 286
TasI AATT 2 cut(s) 139, 310
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 1 cut(s) 64
TseFI GTSAC 1 cut(s) 253
Tsp45I GTSAC 1 cut(s) 253
TspGWI ACGGA 1 cut(s) 26
VpaK11BI GGWCC 4 cut(s) 4, 31, 195, 298
XbaI TCTAGA 1 cut(s) 100
XceI RCATGY 1 cut(s) 386
XspI CTAG 2 cut(s) 81, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.