Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002681

Physical Location & Seq

Genomic Coordinates Reverse (-)

54010454 .. 54011835

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G032920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATCGTCTCCGGCTCATTCGACGAAACGGTGCGTATTTGGGATGTCAAGACGGGAAAGTGCCTCAAGGTGTTGCCGGCTCACTCCGATCCCGTCACGGCCGTTGATTTCAATCGGGACGGCTCTATTATCGTTTCGAGTAGCTACGATGGGCTGTGTAGGACCTGGGATGCTTCCACCGGGCATTGCACCAAGACTTTGATTGACGATGAGAATCCTCCGGTTTCGTTTGTCAAGTTCTCCCCTAATGGCAAGTTCATTCTTGTTGGCACTTTGGATAATACTCTGAGGCTTTGGAACTTTCAAACCGGCAAATGTCTAAAGACTTACACAGGCCACAAGAGTTCAAAATTCTGCATTTCTTCCACCTTTTCTGTGACAACTGGGAAATACATTGTAAGCGGTTCTGAAGATCATTGTTTATACTTGTGGGAATTGCAAAGCAGGAAAATAGTTCAGAAATTGGAAGGTCACACTGATACTGTTATATCAGTTTCATGTCACCCTGAAAAGAACATAATTGCATCTGGTGCACTTGGGAATGATAAGACTGTGAAGATCTGGACTCAGGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0001085 GO:0001501 GO:0001654 GO:0002682 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005671 GO:0005737 GO:0005815 GO:0005856 GO:0005929 GO:0006109 GO:0006111 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007423 GO:0007444 GO:0007482 GO:0007568 GO:0008134 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008340 GO:0008757 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010259 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010675 GO:0010676 GO:0010906 GO:0010907 GO:0015630 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022008 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030162 GO:0030182 GO:0031175 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032501 GO:0032502 GO:0032991 GO:0034708 GO:0034968 GO:0035064 GO:0035097 GO:0035216 GO:0035295 GO:0035947 GO:0035948 GO:0036064 GO:0036211 GO:0042054 GO:0042176 GO:0042393 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043255 GO:0043412 GO:0043414 GO:0043543 GO:0043687 GO:0043966 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0044545 GO:0044665 GO:0044666 GO:0044782 GO:0045595 GO:0045637 GO:0045652 GO:0045722 GO:0045732 GO:0045862 GO:0045893 GO:0045913 GO:0045935 GO:0045944 GO:0048188 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048666 GO:0048699 GO:0048731 GO:0048736 GO:0048737 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0060255 GO:0060271 GO:0060290 GO:0060429 GO:0061136 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0070925 GO:0071339 GO:0071704 GO:0071840 GO:0080090 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:0140030 GO:0140034 GO:0140096 GO:1900402 GO:1901564 GO:1901800 GO:1902493 GO:1902494 GO:1902562 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1903706 GO:1990234 GO:2000026 GO:2000058 GO:2000060 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

192

Amino Acids

21.24

Weight (kDa)

7.6

Isoelectric Point (pI)

29.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	1 - 189	2.5e-95	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	1 - 62	5.5e-07	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	1 - 99	5e-15	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	2 - 71	5.3e-18	WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	2 - 66	4e-08	CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3	PF25174	2 - 67	8.5e-14	THOC3 beta-propeller domain
WD40_Prp19	PF24814	2 - 116	1.5e-21	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	2 - 156	1.3e-19	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	2 - 67	6e-12	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	2 - 60	2.5e-06	CDC20/Fizzy WD40 domain
Beta-prop_EML	PF23409	3 - 95	4.1e-07	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR19_1st	PF23389	5 - 152	7.9e-06	WDR19 first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	8 - 87	1.2e-09	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	19 - 57	9.9e-11	WD domain, G-beta repeat
Beta-prop_Aladin	PF25460	21 - 150	1.9e-10	Aladin seven-bladed propeller
EIF3I	PF24805	25 - 119	2e-10	EIF3I
WD40_Gbeta	PF25391	25 - 148	7.7e-13	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st	PF25171	45 - 189	3.1e-11	WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz	PF24807	56 - 190	3.7e-21	CDC20/Fizzy WD40 domain
WD40	PF00400	62 - 100	5.3e-07	WD domain, G-beta repeat
Beta-prop_NWD2_C	PF23586	68 - 177	4.3e-06	NWD2 C-terminal beta-propeller
Beta-prop_TEP1_2nd	PF25047	69 - 190	9e-12	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	71 - 189	2.6e-22	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	73 - 118	8.9e-07	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	75 - 189	1.5e-13	WDR3 second beta-propeller domain
EIF3I	PF24805	75 - 155	2e-07	EIF3I
WDR55	PF24796	77 - 176	1.4e-09	WDR55
WD40_MABP1-WDR62_2nd	PF24782	77 - 146	1e-07	MABP1/WDR62 second WD40 domain
Beta-prop_ACSF4	PF13570	80 - 179	4.7e-07	Beta-alanine-activating enzyme, beta-propeller
Beta-prop_SCAP	PF24017	87 - 189	9.8e-06	SCAP Beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	89 - 188	8.9e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML	PF23409	95 - 177	8.6e-09	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	104 - 144	2.6e-06	WD domain, G-beta repeat
WD40_Prp19	PF24814	113 - 191	1.7e-11	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	127 - 191	4.9e-08	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	128 - 189	7.8e-12	THOC3 beta-propeller domain
WD40	PF00400	150 - 188	4e-08	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49660
fragaria_vesca	FvH4_1g18760
malus_domestica	MD01G1047000.v1.1 MD11G1213300.v1.1 MD15G1305300.v1.1 MD16G1282400.v1.1
prunus_persica	Prupe.6G211800_v2.0.a1
pyrus_communis	pycom01g07290 pycom15g26850 pycom16g25220
rosa_chinensis	RchiOBHm_Chr1g0324081 RchiOBHm_Chr2g0109631 RchiOBHm_Chr4g0412241 RchiOBHm_Chr7g0189251
rosa_laevigata	RLG00000017751 RLG00000018963 RLG00000020091 RLG00000024634 RLG00000029197 RLG00000032867 RLG00000034693 RLG00000035499
rosa_multiflora	Rmu_sc0000595.1_g000009 Rmu_sc0004483.1_g000044 Rmu_sc0010548.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113400 Rroxscaffold_2G00134080
rosa_rugosa	Rorug02G0161400
rosa_samantha	Rh1AG321900 Rh2AG213600 Rh2BG224000 Rh2CG215800 Rh2CG303700 Rh2DG219100 Rh5DG065100 Rh5DG130500 Rh7DG103300
rosa_wichuraiana	Rw1G015840 Rw2G032920 Rw2G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	402
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	429
AgsI	TTSAA	3 cut(s)	112, 305, 348
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	1 cut(s)	144
AluI	AGCT	1 cut(s)	144
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	1 cut(s)	13
Alw44I	GTGCAC	1 cut(s)	531
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	2 cut(s)	99, 334
ApaLI	GTGCAC	1 cut(s)	531
ApoI	RAATTY	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	535
Bbv12I	GWGCWC	1 cut(s)	535
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	3 cut(s)	86, 114, 136
BciT130I	CCWGG	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	13
BglII	AGATCT	1 cut(s)	558
Bme1390I	CCNGG	2 cut(s)	166, 181
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	162
BmrFI	CCNGG	2 cut(s)	166, 181
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	2 cut(s)	160, 533
BmuI	ACTGGG	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	181
BsaBI	GATNNNNATC	2 cut(s)	111, 213
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	220
Bse118I	RCCGGY	2 cut(s)	76, 308
Bse1I	ACTGG	1 cut(s)	388
Bse3DI	GCAATG	1 cut(s)	184
Bse8I	GATNNNNATC	2 cut(s)	111, 213
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	2 cut(s)	49, 175
BseJI	GATNNNNATC	2 cut(s)	111, 213
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	388
BseSI	GKGCMC	1 cut(s)	535
BseX3I	CGGCCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	101, 336
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	535
BsiSI	CCGG	5 cut(s)	12, 77, 180, 221, 309
BslFI	GGGAC	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	13
BsmBI	CGTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	101, 336
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp143I	GATC	4 cut(s)	3, 88, 412, 558
BspACI	CCGC	1 cut(s)	402
BspANI	GGCC	2 cut(s)	101, 336
BspCNI	CTCAG	1 cut(s)	279
BspPI	GGATC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	184
BsrFI	RCCGGY	2 cut(s)	76, 308
BsrI	ACTGG	1 cut(s)	388
BssAI	RCCGGY	2 cut(s)	76, 308
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	4 cut(s)	3, 88, 412, 558
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	3 cut(s)	31, 484, 553
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	287, 567
BstF5I	GGATG	2 cut(s)	49, 175
BstKTI	GATC	4 cut(s)	6, 91, 415, 561
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	4 cut(s)	3, 88, 412, 558
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	164, 179
BstSLI	GKGCMC	1 cut(s)	535
BstX2I	RGATCY	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	558
BstZI	CGGCCG	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	101, 336
BtsCI	GGATG	2 cut(s)	49, 175
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	78
Cfr10I	RCCGGY	2 cut(s)	76, 308
Cfr13I	GGNCC	1 cut(s)	162
CviAII	CATG	1 cut(s)	498
CviJI	RGCY	8 cut(s)	15, 80, 101, 123, 144, 154, 292, 336
CviKI_1	RGCY	8 cut(s)	15, 80, 101, 123, 144, 154, 292, 336
DdeI	CTNAG	2 cut(s)	287, 567
DpnI	GATC	4 cut(s)	5, 90, 414, 560
DpnII	GATC	4 cut(s)	3, 88, 412, 558
EaeI	YGGCCR	1 cut(s)	99
EagI	CGGCCG	1 cut(s)	99
EclXI	CGGCCG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	162
Eco52I	CGGCCG	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	1 cut(s)	501
FaiI	YATR	4 cut(s)	424, 488, 499, 518
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	497
FokI	GGATG	2 cut(s)	56, 182
HaeIII	GGCC	2 cut(s)	101, 336
HapII	CCGG	5 cut(s)	12, 77, 180, 221, 309
Hin1II	CATG	1 cut(s)	501
HinfI	GANTC	2 cut(s)	214, 565
HpaII	CCGG	5 cut(s)	12, 77, 180, 221, 309
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	1 cut(s)	533
Hpy188I	TCNGA	4 cut(s)	88, 288, 409, 459
Hpy188III	TCNNGA	4 cut(s)	49, 116, 562, 569
Hpy8I	GTNNAC	1 cut(s)	533
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	3 cut(s)	31, 484, 553
HpyCH4V	TGCA	5 cut(s)	189, 357, 439, 524, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	2 cut(s)	287, 567
Hsp92II	CATG	1 cut(s)	501
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	4 cut(s)	3, 88, 412, 558
LweI	GCATC	2 cut(s)	160, 533
MaeIII	GTNAC	4 cut(s)	94, 376, 470, 500
MalI	GATC	4 cut(s)	5, 90, 414, 560
MboI	GATC	4 cut(s)	3, 88, 412, 558
MboII	GAAGA	3 cut(s)	354, 422, 568
MflI	RGATCY	1 cut(s)	558
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	4 cut(s)	350, 434, 461, 519
MlyI	GAGTC	1 cut(s)	559
MnlI	CCTC	3 cut(s)	74, 228, 282
MroNI	GCCGGC	1 cut(s)	76
MspI	CCGG	5 cut(s)	12, 77, 180, 221, 309
MspR9I	CCNGG	2 cut(s)	166, 181
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	530
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	4 cut(s)	3, 88, 412, 558
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	501
NmuCI	GTSAC	4 cut(s)	94, 376, 470, 500
PdiI	GCCGGC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	214
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PpuMI	RGGWCCY	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	162
PspPPI	RGGWCCY	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	558
Sau3AI	GATC	4 cut(s)	3, 88, 412, 558
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	2 cut(s)	166, 181
SduI	GDGCHC	1 cut(s)	535
SetI	ASST	5 cut(s)	72, 146, 167, 371, 472
SfaNI	GCATC	2 cut(s)	160, 533
SinI	GGWCC	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	4 cut(s)	350, 434, 461, 519
SsiI	CCGC	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	164, 179
TaaI	ACNGT	3 cut(s)	31, 484, 553
TaqI	TCGA	2 cut(s)	21, 137
TasI	AATT	4 cut(s)	350, 434, 461, 519
TfiI	GAWTC	1 cut(s)	214
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	4 cut(s)	94, 376, 470, 500
Tsp45I	GTSAC	4 cut(s)	94, 376, 470, 500
TspDTI	ATGAA	2 cut(s)	247, 486
TspRI	CASTG	1 cut(s)	481
VneI	GTGCAC	1 cut(s)	531
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.