Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002681

Physical Location & Seq

Genomic Coordinates Reverse (-)

38967889 .. 38968323

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTGATGGTAATATCGATGGCGTCCTACATGTCCGATGTTGTGGGTATGCAATGGGTTTTACGGAGGATCGGCGATGGAGGAGATGAAAAGATTGAGTTTATGGCTGAATTGAAAGCGAGAGAGAGAGAGAGAGTTGTGTATGTGTGTGTGGAGGAGTATTATACAATGATGACGATCGTCTTGTCTAATTTTGAAAAATTAGGGAAAGAAGGAATTATAGGTACATTGAACAAGACCAGATTTGGACAAAACCTTCTAGGGCCACAACCAATGCGTCTCGACCTCGCCTTCTCCCTTGACTCCCGGTTCATGGTCTCCGTCTCCGACGACAAAACCCCCCACCTCTTGGACTTCGAAACCGGCGACCTCATCAAAACCCTCCGCTGCCACGCAAACCAAGTTGGAAGAAACAAGAAGACGAGGAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000123 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0005929 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009987 GO:0010228 GO:0015630 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022008 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030182 GO:0031175 GO:0031248 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034708 GO:0034968 GO:0035097 GO:0036064 GO:0036211 GO:0042393 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044446 GO:0044451 GO:0044463 GO:0044464 GO:0044665 GO:0044782 GO:0048188 GO:0048468 GO:0048608 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0051276 GO:0051568 GO:0060271 GO:0061458 GO:0070013 GO:0070925 GO:0071339 GO:0071704 GO:0071840 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

144

Amino Acids

16.49

Weight (kDa)

8.58

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	94 - 135	7.7e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49660
fragaria_vesca	FvH4_1g18760
malus_domestica	MD01G1047000.v1.1 MD11G1213300.v1.1 MD15G1305300.v1.1 MD16G1282400.v1.1
prunus_persica	Prupe.6G211800_v2.0.a1
pyrus_communis	pycom01g07290 pycom15g26850 pycom16g25220
rosa_chinensis	RchiOBHm_Chr1g0324081 RchiOBHm_Chr2g0109631 RchiOBHm_Chr4g0412241 RchiOBHm_Chr7g0189251
rosa_laevigata	RLG00000017751 RLG00000018963 RLG00000020091 RLG00000024634 RLG00000029197 RLG00000032867 RLG00000034693 RLG00000035499
rosa_multiflora	Rmu_sc0000595.1_g000009 Rmu_sc0004483.1_g000044 Rmu_sc0010548.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113400 Rroxscaffold_2G00134080
rosa_rugosa	Rorug02G0161400
rosa_samantha	Rh1AG321900 Rh2AG213600 Rh2BG224000 Rh2CG215800 Rh2CG303700 Rh2DG219100 Rh5DG065100 Rh5DG130500 Rh7DG103300
rosa_wichuraiana	Rw1G015840 Rw2G032920 Rw2G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	349
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	2 cut(s)	313, 349
AflIII	ACRYGT	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	115, 197, 232
AluBI	AGCT	1 cut(s)	431
AluI	AGCT	1 cut(s)	431
Alw26I	GTCTC	3 cut(s)	284, 322, 328
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	2 cut(s)	13, 71
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	3 cut(s)	284, 322, 328
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	307
BoxI	GACNNNNGTC	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	425
Bpu14I	TTCGAA	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	307
Bsa29I	ATCGAT	1 cut(s)	17
BsaBI	GATNNNNATC	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 349
Bse118I	RCCGGY	1 cut(s)	362
Bse3DI	GCAATG	1 cut(s)	59
Bse8I	GATNNNNATC	1 cut(s)	176
BseCI	ATCGAT	1 cut(s)	17
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	2 cut(s)	313, 349
BseMI	GCAATG	1 cut(s)	59
BseRI	GAGGAG	2 cut(s)	96, 170
BseXI	GCAGC	1 cut(s)	374
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	265
BshVI	ATCGAT	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	307, 363
BslI	CCNNNNNNNGG	2 cut(s)	313, 349
BsmAI	GTCTC	3 cut(s)	284, 322, 328
BsmBI	CGTCTC	2 cut(s)	284, 328
BsnI	GGCC	1 cut(s)	265
Bso31I	GGTCTC	1 cut(s)	322
Bsp119I	TTCGAA	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	69, 177
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	1 cut(s)	265
BspDI	ATCGAT	1 cut(s)	17
BspPI	GGATC	1 cut(s)	77
BspT104I	TTCGAA	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	362
BssAI	RCCGGY	1 cut(s)	362
BssMI	GATC	2 cut(s)	69, 177
BssNI	GRCGYC	1 cut(s)	23
BstACI	GRCGYC	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	357
BstKTI	GATC	2 cut(s)	72, 180
BstMAI	GTCTC	3 cut(s)	284, 322, 328
BstMBI	GATC	2 cut(s)	69, 177
BstMCI	CGRYCG	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	34
BstPAI	GACNNNNGTC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	1 cut(s)	425
Bsu15I	ATCGAT	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	265
BsuTUI	ATCGAT	1 cut(s)	17
BtgZI	GCGATG	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	263
ClaI	ATCGAT	1 cut(s)	17
CseI	GACGC	2 cut(s)	12, 266
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	2 cut(s)	31, 313
CviJI	RGCY	3 cut(s)	107, 265, 431
CviKI_1	RGCY	3 cut(s)	107, 265, 431
CviQI	GTAC	1 cut(s)	225
DpnI	GATC	2 cut(s)	71, 179
DpnII	GATC	2 cut(s)	69, 177
Eco31I	GGTCTC	1 cut(s)	322
Esp3I	CGTCTC	2 cut(s)	284, 328
FaeI	CATG	2 cut(s)	34, 316
FaiI	YATR	7 cut(s)	32, 50, 104, 144, 165, 221, 314
FatI	CATG	2 cut(s)	30, 312
Fnu4HI	GCNGC	1 cut(s)	388
Fsp4HI	GCNGC	1 cut(s)	388
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	1 cut(s)	388
HaeIII	GGCC	1 cut(s)	265
HapII	CCGG	2 cut(s)	307, 363
HgaI	GACGC	2 cut(s)	12, 266
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	34, 316
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	2 cut(s)	307, 363
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	37, 328
Hpy188III	TCNNGA	1 cut(s)	281
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	3 cut(s)	206, 266, 301
HpyCH4V	TGCA	1 cut(s)	52
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	34, 316
Kzo9I	GATC	2 cut(s)	69, 177
LpnPI	CCDG	3 cut(s)	253, 320, 376
Lsp1109I	GCAGC	1 cut(s)	374
MaeI	CTAG	1 cut(s)	260
MalI	GATC	2 cut(s)	71, 179
MboI	GATC	2 cut(s)	69, 177
MboII	GAAGA	2 cut(s)	420, 430
MluCI	AATT	4 cut(s)	110, 190, 200, 216
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	2 cut(s)	351, 385
MnlI	CCTC	8 cut(s)	60, 74, 148, 296, 356, 380, 392, 417
MspA1I	CMGCKG	1 cut(s)	387
MspI	CCGG	2 cut(s)	307, 363
MspR9I	CCNGG	1 cut(s)	307
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	2 cut(s)	69, 177
NlaIII	CATG	2 cut(s)	34, 316
NspI	RCATGY	1 cut(s)	34
NspV	TTCGAA	1 cut(s)	357
PciI	ACATGT	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	389
Ple19I	CGATCG	1 cut(s)	180
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PscI	ACATGT	1 cut(s)	30
PshAI	GACNNNNGTC	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	263
PvuI	CGATCG	1 cut(s)	180
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	2 cut(s)	69, 177
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	307
SetI	ASST	6 cut(s)	226, 258, 288, 348, 372, 433
SfuI	TTCGAA	1 cut(s)	357
Sse9I	AATT	4 cut(s)	110, 190, 200, 216
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	305
TaqI	TCGA	3 cut(s)	17, 282, 357
TasI	AATT	4 cut(s)	110, 190, 200, 216
TseI	GCWGC	1 cut(s)	387
TspDTI	ATGAA	2 cut(s)	102, 301
TspGWI	ACGGA	2 cut(s)	79, 310
Van91I	CCANNNNNTGG	1 cut(s)	349
XceI	RCATGY	1 cut(s)	34
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.