Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

22137435 .. 22139046

Gene Structure 1612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAGGGTTTGGCGGGTCCGATCGATCCGATTTTGCCGCCTCCGTCGGAGATGCTGCCTGAGGAGGGCTTTGCTCTCAGAGAATGGAGGAGGCAGAATGCGATTCATCTCGAGGAGAAGGAGAAGAGAGAAAAGGAGTTGTTGGTTCAAATAATTGAGGAAGCAGATGAATTCAAGGTGGGATTCTACCAGAAGAGGAAGATCTCTACTGAAAATAACAAGGCTGCTAACAGGGAAAGGGAGAAGCTGTTCCTGGCTAATCAAGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTGGAAGGCAATTGCGGACCTCATTCCCAATGAGGTGCCAGCTATAGAGAAGAAGAGAGGGAAGAAGGATACGGAAAAGAAGCCATCCATTCTCGTTGTCCAAGGTCCAAAGCCTGGAAAGCCAACCGAGCTTTCAAGGATGAGGCAGATACTTTTAAAATTGAAGCATAATACACCTCCCCACCTGAAGCCTTCACCTCCTGCCCCAGCTCCCAGCAAGGATGCAAAACCGAGTACTTCTGCTCCCCAGAAGGCTGCAGTTGTGGCGGCTACCCCCGAGGCTGTAGTAGCTGCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

199

Amino Acids

22.17

Weight (kDa)

9.35

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clathrin_lg_ch	PF01086	21 - 131	9.8e-08	Clathrin light chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	331
AccB7I	CCANNNNNTGG	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	4 cut(s)	14, 38, 311, 563
AclWI	GGATC	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	503
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	2 cut(s)	65, 410
AgsI	TTSAA	4 cut(s)	149, 175, 432, 460
AjnI	CCWGG	2 cut(s)	252, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	412, 444
AloI	GAACNNNNNNTCC	2 cut(s)	233, 265
AluBI	AGCT	5 cut(s)	247, 338, 427, 506, 587
AluI	AGCT	5 cut(s)	247, 338, 427, 506, 587
AlwI	GGATC	1 cut(s)	20
Ama87I	CYCGRG	2 cut(s)	110, 572
ApeKI	GCWGC	4 cut(s)	55, 224, 551, 587
ApoI	RAATTY	1 cut(s)	170
Asp700I	GAANNNNTTC	1 cut(s)	248
AspS9I	GGNCC	3 cut(s)	17, 313, 401
AsuHPI	GGTGA	1 cut(s)	483
AvaI	CYCGRG	2 cut(s)	110, 572
AvaII	GGWCC	3 cut(s)	17, 313, 401
AxyI	CCTNAGG	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	331
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	4 cut(s)	42, 211, 538, 574
BccI	CCATC	1 cut(s)	388
BciT130I	CCWGG	2 cut(s)	254, 411
BciVI	GTATCC	1 cut(s)	358
BfmI	CTRYAG	3 cut(s)	339, 552, 579
BfuI	GTATCC	1 cut(s)	358
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	6 cut(s)	38, 56, 225, 552, 564, 588
BlsI	GCNGC	6 cut(s)	39, 57, 226, 553, 565, 589
BmcAI	AGTACT	1 cut(s)	532
Bme1390I	CCNGG	2 cut(s)	254, 411
Bme18I	GGWCC	3 cut(s)	17, 313, 401
BmeT110I	CYCGRG	2 cut(s)	110, 572
BmgT120I	GGNCC	3 cut(s)	17, 313, 401
BmiI	GGNNCC	2 cut(s)	18, 333
BmrFI	CCNGG	2 cut(s)	254, 411
BmsI	GCATC	2 cut(s)	42, 508
Bpu10I	CCTNAGC	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	397, 573
BsaXI	ACNNNNNCTCC	4 cut(s)	233, 263, 523, 553
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 410
Bse1I	ACTGG	1 cut(s)	302
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	254, 411
BseCI	ATCGAT	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	397, 573
BseGI	GGATG	3 cut(s)	380, 441, 523
BseLI	CCNNNNNNNGG	2 cut(s)	65, 410
BseMII	CTCAG	3 cut(s)	51, 91, 270
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	3 cut(s)	77, 103, 128
BseXI	GCAGC	4 cut(s)	42, 211, 538, 574
BseYI	CCCAGC	2 cut(s)	502, 509
Bsh1285I	CGRYCG	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	331
BshVI	ATCGAT	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	24
BsiHKCI	CYCGRG	2 cut(s)	110, 572
BslI	CCNNNNNNNGG	2 cut(s)	65, 410
BsmI	GAATGC	1 cut(s)	103
BsoBI	CYCGRG	2 cut(s)	110, 572
Bsp143I	GATC	3 cut(s)	21, 25, 201
BspACI	CCGC	4 cut(s)	14, 38, 311, 563
BspCNI	CTCAG	3 cut(s)	52, 90, 271
BspDI	ATCGAT	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	18, 333
BspMAI	CTGCAG	1 cut(s)	556
BspPI	GGATC	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	397, 573
BssMI	GATC	3 cut(s)	21, 25, 201
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	2 cut(s)	254, 411
Bst6I	CTCTTC	3 cut(s)	119, 188, 344
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	3 cut(s)	60, 77, 279
BstF5I	GGATG	3 cut(s)	380, 441, 523
BstKTI	GATC	3 cut(s)	24, 28, 204
BstMBI	GATC	3 cut(s)	21, 25, 201
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	4 cut(s)	415, 424, 560, 584
BstNI	CCWGG	2 cut(s)	254, 411
BstSCI	CCNGG	2 cut(s)	252, 409
BstSFI	CTRYAG	3 cut(s)	339, 552, 579
BstV1I	GCAGC	4 cut(s)	42, 211, 538, 574
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	24
Bsu36I	CCTNAGG	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	358
BsuTUI	ATCGAT	1 cut(s)	24
BtsCI	GGATG	3 cut(s)	380, 441, 523
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	3 cut(s)	17, 313, 401
ClaI	ATCGAT	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	1 cut(s)	275
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	3 cut(s)	60, 77, 279
DpnI	GATC	3 cut(s)	23, 27, 203
DpnII	GATC	3 cut(s)	21, 25, 201
DraI	TTTAAA	1 cut(s)	453
Eam1104I	CTCTTC	3 cut(s)	119, 188, 344
EarI	CTCTTC	3 cut(s)	119, 188, 344
Eco130I	CCWWGG	1 cut(s)	397
Eco47I	GGWCC	3 cut(s)	17, 313, 401
Eco57I	CTGAAG	1 cut(s)	503
Eco81I	CCTNAGG	1 cut(s)	60
Eco88I	CYCGRG	2 cut(s)	110, 572
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	252, 409
EcoT14I	CCWWGG	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	1 cut(s)	278
FaiI	YATR	3 cut(s)	276, 341, 465
FatI	CATG	1 cut(s)	274
FauI	CCCGC	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	6 cut(s)	38, 56, 225, 552, 564, 588
FokI	GGATG	3 cut(s)	367, 448, 530
Fsp4HI	GCNGC	6 cut(s)	38, 56, 225, 552, 564, 588
GluI	GCNGC	6 cut(s)	38, 56, 225, 552, 564, 588
GsaI	CCCAGC	2 cut(s)	506, 513
Hin1II	CATG	1 cut(s)	278
HinfI	GANTC	2 cut(s)	103, 183
HphI	GGTGA	1 cut(s)	483
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	4 cut(s)	21, 30, 49, 80
Hpy188III	TCNNGA	2 cut(s)	110, 263
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	5 cut(s)	112, 295, 355, 498, 541
HpyCH4V	TGCA	2 cut(s)	521, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	415, 424, 560, 584
HpyF3I	CTNAG	3 cut(s)	60, 77, 279
Hsp92II	CATG	1 cut(s)	278
Kzo9I	GATC	3 cut(s)	21, 25, 201
LmnI	GCTCC	2 cut(s)	511, 544
Lsp1109I	GCAGC	4 cut(s)	42, 211, 538, 574
LweI	GCATC	2 cut(s)	42, 508
MalI	GATC	3 cut(s)	23, 27, 203
MboI	GATC	3 cut(s)	21, 25, 201
MboII	GAAGA	6 cut(s)	136, 205, 211, 358, 361, 370
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	201
MluCI	AATT	4 cut(s)	153, 170, 306, 455
MmeI	TCCRAC	1 cut(s)	27
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	1 cut(s)	452
MspR9I	CCNGG	2 cut(s)	254, 411
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	2 cut(s)	254, 411
MwoI	GCNNNNNNNGC	4 cut(s)	415, 424, 560, 584
NdeII	GATC	3 cut(s)	21, 25, 201
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	2 cut(s)	18, 333
PaeR7I	CTCGAG	1 cut(s)	110
PctI	GAATGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	103, 183
PflMI	CCANNNNNTGG	1 cut(s)	410
PkrI	GCNGC	6 cut(s)	39, 57, 226, 553, 565, 589
Ple19I	CGATCG	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	252, 409
PspFI	CCCAGC	2 cut(s)	502, 509
PspGI	CCWGG	2 cut(s)	252, 409
PspN4I	GGNNCC	2 cut(s)	18, 333
PspPI	GGNCC	3 cut(s)	17, 313, 401
PstI	CTGCAG	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	201
PvuI	CGATCG	1 cut(s)	24
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	6 cut(s)	38, 56, 225, 552, 564, 588
Sau3AI	GATC	3 cut(s)	21, 25, 201
Sau96I	GGNCC	3 cut(s)	17, 313, 401
ScaI	AGTACT	1 cut(s)	532
ScrFI	CCNGG	2 cut(s)	254, 411
SfaNI	GCATC	2 cut(s)	42, 508
SfcI	CTRYAG	3 cut(s)	339, 552, 579
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	3 cut(s)	17, 313, 401
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	4 cut(s)	153, 170, 306, 455
SsiI	CCGC	4 cut(s)	14, 38, 311, 563
StyD4I	CCNGG	2 cut(s)	252, 409
StyI	CCWWGG	1 cut(s)	397
TaqI	TCGA	2 cut(s)	24, 111
TasI	AATT	4 cut(s)	153, 170, 306, 455
TatI	WGTACW	1 cut(s)	530
TauI	GCSGC	2 cut(s)	40, 566
TfiI	GAWTC	2 cut(s)	103, 183
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TseI	GCWGC	4 cut(s)	55, 224, 551, 587
TspDTI	ATGAA	3 cut(s)	95, 183, 263
TspGWI	ACGGA	2 cut(s)	33, 383
Van91I	CCANNNNNTGG	1 cut(s)	410
VpaK11BI	GGWCC	3 cut(s)	17, 313, 401
XapI	RAATTY	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.