Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004553

Physical Location & Seq

Genomic Coordinates Forward (+)

17360302 .. 17360754

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTTAAATACTGACGTGACTTTTTTTAATAAAAAAAACTTGAATTTTCTCAAAAAAAAAAAAAAAAAAAACACCAAAAACCCGTTCCAACTCATCCTCACCCGCAACCGAGTCACCGACCTCCTCCTCACCATCAAACGCCTCACCGGCTACATTCCCTTCGAACTCGGCCACCTCGACTCGGTCAAGCGACTCAATCTTTCAAACAACAACTTCACCATGCCCATCCGGGCCCACCTCATTGCTCTCGACCTCTCCAACAACTCTCCCGTGGGTCCAATCCCGGACCAAATCCGATCCCTCAAGGACCTGAACCACCTCGACCTGTCTTCCAATTTCCTCAATAGCTCTCTCCCCGAGTCTATCGCCGAGCTTTCCTCGGGTGTGATCGCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

133

Amino Acids

14.91

Weight (kDa)

9.93

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004553)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17200
rosa_chinensis	RchiOBHm_Chr2g0131311 RchiOBHm_Chr7g0219971
rosa_laevigata	RLG00000009451 RLG00000034059
rosa_multiflora	Rmu_sc0002758.1_g000005 Rmu_sc0003861.1_g000004 Rmu_sc0018646.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432220 Rroxscaffold_1G00030210 Rroxscaffold_1G00033050 Rroxscaffold_1G00034250 Rroxscaffold_1G00039200 Rroxscaffold_2G00078570 Rroxscaffold_2G00089680 Rroxscaffold_2G00145370 Rroxscaffold_4G00308230 Rroxscaffold_4G00318460 Rroxscaffold_4G00321200 Rroxscaffold_4G00322640 Rroxscaffold_4G00325620 Rroxscaffold_4G00325790 Rroxscaffold_5G00344550 Rroxscaffold_5G00346240 Rroxscaffold_5G00356260 Rroxscaffold_5G00363420 Rroxscaffold_5G00376620 Rroxscaffold_7G00197800 Rroxscaffold_7G00198690 Rroxscaffold_7G00200910
rosa_samantha	Rh1CG272800 Rh5AG536300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	291
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	43, 204
AjiI	CACGTC	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AluBI	AGCT	2 cut(s)	348, 373
AluI	AGCT	2 cut(s)	348, 373
AlwI	GGATC	1 cut(s)	291
Ama87I	CYCGRG	2 cut(s)	356, 379
AoxI	GGCC	2 cut(s)	169, 231
ApaI	GGGCCC	1 cut(s)	235
ApoI	RAATTY	1 cut(s)	43
AspS9I	GGNCC	5 cut(s)	231, 232, 275, 286, 307
AsuC2I	CCSGG	2 cut(s)	230, 284
AsuHPI	GGTGA	5 cut(s)	91, 106, 121, 136, 208
AsuII	TTCGAA	1 cut(s)	162
AvaI	CYCGRG	2 cut(s)	356, 379
AvaII	GGWCC	3 cut(s)	275, 286, 307
BaeGI	GKGCMC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	321
BccI	CCATC	2 cut(s)	140, 233
BcnI	CCSGG	2 cut(s)	230, 284
BglI	GCCNNNNNGGC	1 cut(s)	147
Bme1390I	CCNGG	2 cut(s)	230, 284
Bme18I	GGWCC	3 cut(s)	275, 286, 307
BmeT110I	CYCGRG	2 cut(s)	356, 379
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	5 cut(s)	231, 232, 275, 286, 307
BmiI	GGNNCC	2 cut(s)	233, 276
BmrFI	CCNGG	2 cut(s)	230, 284
BpiI	GAAGAC	1 cut(s)	321
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
Bpu14I	TTCGAA	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	2 cut(s)	230, 284
BsaJI	CCNNGG	2 cut(s)	270, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	270, 378
BseGI	GGATG	2 cut(s)	93, 225
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	240
BseRI	GAGGAG	2 cut(s)	113, 116
BseSI	GKGCMC	1 cut(s)	235
BshFI	GGCC	2 cut(s)	171, 233
BsiHKCI	CYCGRG	2 cut(s)	356, 379
BsiSI	CCGG	3 cut(s)	147, 229, 284
BslI	CCNNNNNNNGG	1 cut(s)	181
BsnI	GGCC	2 cut(s)	171, 233
BsoBI	CYCGRG	2 cut(s)	356, 379
Bsp119I	TTCGAA	1 cut(s)	162
Bsp120I	GGGCCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	296, 387
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	2 cut(s)	171, 233
BspLI	GGNNCC	2 cut(s)	233, 276
BspPI	GGATC	1 cut(s)	291
BspT104I	TTCGAA	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	270, 378
BssMI	GATC	2 cut(s)	296, 387
BstBI	TTCGAA	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	93, 225
BstKTI	GATC	2 cut(s)	299, 390
BstMBI	GATC	2 cut(s)	296, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	228, 282
BstSLI	GKGCMC	1 cut(s)	235
BstV2I	GAAGAC	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	171, 233
BtgI	CCRYGG	1 cut(s)	270
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	93, 225
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	5 cut(s)	231, 232, 275, 286, 307
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	5 cut(s)	150, 171, 233, 348, 373
CviKI_1	RGCY	5 cut(s)	150, 171, 233, 348, 373
DpnI	GATC	2 cut(s)	298, 389
DpnII	GATC	2 cut(s)	296, 387
EaeI	YGGCCR	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	235
Eco47I	GGWCC	3 cut(s)	275, 286, 307
Eco88I	CYCGRG	2 cut(s)	356, 379
EcoO109I	RGGNCCY	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	235
FaeI	CATG	1 cut(s)	223
FaiI	YATR	1 cut(s)	221
FatI	CATG	1 cut(s)	219
FauI	CCCGC	1 cut(s)	110
FokI	GGATG	2 cut(s)	80, 212
FriOI	GRGCYC	1 cut(s)	235
HaeIII	GGCC	2 cut(s)	171, 233
HapII	CCGG	3 cut(s)	147, 229, 284
Hin1II	CATG	1 cut(s)	223
HinfI	GANTC	4 cut(s)	111, 179, 192, 359
HpaII	CCGG	3 cut(s)	147, 229, 284
HphI	GGTGA	5 cut(s)	91, 106, 121, 136, 208
Hpy188I	TCNGA	1 cut(s)	296
Hpy188III	TCNNGA	1 cut(s)	248
HpyAV	CCTTC	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	296, 387
LpnPI	CCDG	5 cut(s)	160, 242, 297, 323, 338
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	16, 112
MalI	GATC	2 cut(s)	298, 389
MboI	GATC	2 cut(s)	296, 387
MboII	GAAGA	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	2 cut(s)	43, 334
MlyI	GAGTC	4 cut(s)	120, 173, 186, 368
MmeI	TCCRAC	2 cut(s)	112, 282
MseI	TTAA	2 cut(s)	5, 27
MspI	CCGG	3 cut(s)	147, 229, 284
MspR9I	CCNGG	2 cut(s)	230, 284
MwoI	GCNNNNNNNGC	1 cut(s)	147
NciI	CCSGG	2 cut(s)	230, 284
NdeII	GATC	2 cut(s)	296, 387
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	2 cut(s)	233, 276
NmeAIII	GCCGAG	2 cut(s)	147, 394
NmuCI	GTSAC	2 cut(s)	16, 112
NspV	TTCGAA	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PflFI	GACNNNGTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	282
PleI	GAGTC	4 cut(s)	119, 173, 186, 367
PpsI	GAGTC	4 cut(s)	119, 173, 186, 367
PpuMI	RGGWCCY	1 cut(s)	307
Psp5II	RGGWCCY	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	233, 276
PspOMI	GGGCCC	1 cut(s)	231
PspPI	GGNCC	5 cut(s)	231, 232, 275, 286, 307
PspPPI	RGGWCCY	1 cut(s)	307
PsyI	GACNNNGTC	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	5, 27
Sau3AI	GATC	2 cut(s)	296, 387
Sau96I	GGNCC	5 cut(s)	231, 232, 275, 286, 307
SchI	GAGTC	4 cut(s)	120, 173, 186, 368
ScrFI	CCNGG	2 cut(s)	230, 284
SduI	GDGCHC	1 cut(s)	235
SfuI	TTCGAA	1 cut(s)	162
SinI	GGWCC	3 cut(s)	275, 286, 307
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	2 cut(s)	43, 334
SsiI	CCGC	1 cut(s)	103
StyD4I	CCNGG	2 cut(s)	228, 282
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	4 cut(s)	162, 177, 249, 321
TaqII	GACCGA	1 cut(s)	172
TasI	AATT	2 cut(s)	43, 334
Tru1I	TTAA	2 cut(s)	5, 27
Tru9I	TTAA	2 cut(s)	5, 27
TseFI	GTSAC	2 cut(s)	16, 112
Tsp45I	GTSAC	2 cut(s)	16, 112
Tth111I	GACNNNGTC	1 cut(s)	182
VpaK11BI	GGWCC	3 cut(s)	275, 286, 307
XapI	RAATTY	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.