Rroxscaffold_1G00034250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004553
Physical Location & Seq
Forward (+)
49665637 .. 49668159
2523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00034250.1

Sequence Viewer

Length: 309 bp
ATGAAAGTGAGAAAAGAACCGTGGAAGGCGCTAGGAGGCCGAGAAGCTTCACAGCTCGAGCTGGAATTCGCCCGATGCTGCTCTTCCTTCACCGGCCGATATCTCTCTCATCCAACCTCGAATATAGTTGATTCCAAAAGGTATTTTTCTGGGCTTGAGCTATATTACAACTTTGTAGAAGACATCGAGGGAAATAACCAACGTGGTAGCCGCTACAAGTCGAAGAACACGGTGCAGTCGAGCTGGGAATCACCTCCTTTCCCCACCATCGTTCTCCCTCCTCCGGCCACCTTTTGCCTTGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.64

Weight (kDa)

8.49

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 211
AcoI YGGCCR 2 cut(s) 94, 285
AcsI RAATTY 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 283
AluBI AGCT 5 cut(s) 47, 55, 61, 160, 243
AluI AGCT 5 cut(s) 47, 55, 61, 160, 243
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 3 cut(s) 37, 94, 285
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 1 cut(s) 65
AspLEI GCGC 1 cut(s) 31
AsuHPI GGTGA 2 cut(s) 82, 243
AvaI CYCGRG 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 275
BfaI CTAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 32
BisI GCNGC 2 cut(s) 79, 211
BlsI GCNGC 2 cut(s) 80, 212
BmeT110I CYCGRG 1 cut(s) 56
BmsI GCATC 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse118I RCCGGY 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 270
BseX3I CGGCCG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 65
BseYI CCCAGC 1 cut(s) 243
BsgI GTGCAG 1 cut(s) 254
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 3 cut(s) 39, 96, 287
BsiEI CGRYCG 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 2 cut(s) 93, 284
BslI CCNNNNNNNGG 1 cut(s) 283
BsnI GGCC 3 cut(s) 39, 96, 287
BsoBI CYCGRG 1 cut(s) 56
BspACI CCGC 1 cut(s) 211
BspANI GGCC 3 cut(s) 39, 96, 287
BspQI GCTCTTC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 21, 232
Bst6I CTCTTC 1 cut(s) 88
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstMCI CGRYCG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 186
BstZI CGGCCG 1 cut(s) 94
BsuRI GGCC 3 cut(s) 39, 96, 287
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 109
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 92
EaeI YGGCCR 2 cut(s) 94, 285
EagI CGGCCG 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
EclXI CGGCCG 1 cut(s) 94
Eco32I GATATC 1 cut(s) 101
Eco52I CGGCCG 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 65
EcoRV GATATC 1 cut(s) 101
FaiI YATR 2 cut(s) 125, 163
Fnu4HI GCNGC 2 cut(s) 79, 211
FokI GGATG 1 cut(s) 96
Fsp4HI GCNGC 2 cut(s) 79, 211
FspBI CTAG 1 cut(s) 32
GlaI GCGC 1 cut(s) 30
GluI GCNGC 2 cut(s) 79, 211
GsaI CCCAGC 1 cut(s) 247
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 3 cut(s) 39, 96, 287
HapII CCGG 2 cut(s) 93, 284
HhaI GCGC 1 cut(s) 31
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 3 cut(s) 131, 248, 302
HpaII CCGG 2 cut(s) 93, 284
HphI GGTGA 2 cut(s) 82, 243
Hpy188III TCNNGA 1 cut(s) 306
HpyAV CCTTC 2 cut(s) 19, 97
HpyCH4III ACNGT 2 cut(s) 21, 232
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 235
HpySE526I ACGT 1 cut(s) 202
HspAI GCGC 1 cut(s) 29
LguI GCTCTTC 1 cut(s) 88
LpnPI CCDG 5 cut(s) 47, 106, 135, 229, 297
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 65
MaeI CTAG 1 cut(s) 32
MaeII ACGT 1 cut(s) 202
MboII GAAGA 3 cut(s) 75, 191, 235
MluCI AATT 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 6 cut(s) 29, 127, 181, 264, 288, 291
MspI CCGG 2 cut(s) 93, 284
NmeAIII GCCGAG 1 cut(s) 65
PaeR7I CTCGAG 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PfeI GAWTC 3 cut(s) 131, 248, 302
PkrI GCNGC 2 cut(s) 80, 212
PspFI CCCAGC 1 cut(s) 243
PspXI VCTCGAGB 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 88
SatI GCNGC 2 cut(s) 79, 211
SfaNI GCATC 1 cut(s) 65
Sfr274I CTCGAG 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 56, 155
SmoI CTYRAG 2 cut(s) 56, 155
Sse9I AATT 1 cut(s) 65
SsiI CCGC 1 cut(s) 211
SspMI CTAG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 21, 232
TaiI ACGT 1 cut(s) 205
TaqI TCGA 5 cut(s) 57, 119, 186, 221, 239
TasI AATT 1 cut(s) 65
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 3 cut(s) 131, 248, 302
TseI GCWGC 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 65
XhoI CTCGAG 1 cut(s) 56
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.