Rroxscaffold_4G00322640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004553
Physical Location & Seq
Forward (+)
53063180 .. 53067225
4046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00322640.1

Sequence Viewer

Length: 198 bp
ATGGAAGGCGCTAGGAGGCCGAGAAGCTACACAGCTCGAGCTGGAATTCGTCCTAGCTGCTCTTTCTTCACCGGCCGATATCTCTCTCATACGACCTCTAATCGAGATTTCGCTAGACCATCGAGGCAGGAATACCATCCGAAGACCCCGTTACCGGAGCTCTCGGCTCTGCGTTTCTCGTTCTTCAACCTCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.59

Weight (kDa)

11.39

Isoelectric Point (pI)

57.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 1 cut(s) 187
AluBI AGCT 5 cut(s) 27, 35, 41, 57, 160
AluI AGCT 5 cut(s) 27, 35, 41, 57, 160
Alw21I GWGCWC 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 2 cut(s) 17, 73
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 1 cut(s) 45
AspLEI GCGC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 36
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 44
BccI CCATC 2 cut(s) 127, 144
BfaI CTAG 3 cut(s) 12, 54, 114
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
BmeT110I CYCGRG 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 149
BsaWI WCCGGW 2 cut(s) 154, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 1 cut(s) 71
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 154
BseX3I CGGCCG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 44
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 2 cut(s) 19, 75
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 3 cut(s) 72, 155, 193
BslI CCNNNNNNNGG 1 cut(s) 154
BsnI GGCC 2 cut(s) 19, 75
BsoBI CYCGRG 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 162
BspANI GGCC 2 cut(s) 19, 75
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BstF5I GGATG 1 cut(s) 136
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstMCI CGRYCG 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 44
BstV2I GAAGAC 1 cut(s) 149
BstZI CGGCCG 1 cut(s) 73
BsuRI GGCC 2 cut(s) 19, 75
BtsCI GGATG 1 cut(s) 136
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 71
CviJI RGCY 8 cut(s) 19, 27, 35, 41, 57, 75, 160, 167
CviKI_1 RGCY 8 cut(s) 19, 27, 35, 41, 57, 75, 160, 167
EaeI YGGCCR 1 cut(s) 73
EagI CGGCCG 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 160
EclXI CGGCCG 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 162
Eco32I GATATC 1 cut(s) 80
Eco52I CGGCCG 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 160
EcoRI GAATTC 1 cut(s) 45
EcoRV GATATC 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 162
FaiI YATR 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 1 cut(s) 123
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 3 cut(s) 12, 54, 114
GlaI GCGC 1 cut(s) 10
GluI GCNGC 1 cut(s) 58
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 2 cut(s) 19, 75
HapII CCGG 3 cut(s) 72, 155, 193
HhaI GCGC 1 cut(s) 11
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HpaII CCGG 3 cut(s) 72, 155, 193
HphI GGTGA 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 1 cut(s) 104
HspAI GCGC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 4 cut(s) 27, 85, 113, 168
Lsp1109I GCAGC 1 cut(s) 44
MaeI CTAG 3 cut(s) 12, 54, 114
MaeIII GTNAC 1 cut(s) 150
MboII GAAGA 3 cut(s) 58, 154, 175
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 1 cut(s) 45
MnlI CCTC 3 cut(s) 9, 106, 117
MspI CCGG 3 cut(s) 72, 155, 193
NmeAIII GCCGAG 2 cut(s) 45, 143
PaeR7I CTCGAG 1 cut(s) 36
PkrI GCNGC 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 162
PspXI VCTCGAGB 1 cut(s) 36
SacI GAGCTC 1 cut(s) 162
SatI GCNGC 1 cut(s) 58
SduI GDGCHC 1 cut(s) 162
SetI ASST 7 cut(s) 29, 37, 43, 59, 98, 162, 192
Sfr274I CTCGAG 1 cut(s) 36
SlaI CTCGAG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 1 cut(s) 45
SspMI CTAG 3 cut(s) 12, 54, 114
SstI GAGCTC 1 cut(s) 162
TaqI TCGA 3 cut(s) 37, 103, 122
TasI AATT 1 cut(s) 45
TseI GCWGC 1 cut(s) 57
XapI RAATTY 1 cut(s) 45
XhoI CTCGAG 1 cut(s) 36
XspI CTAG 3 cut(s) 12, 54, 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.