Rroxscaffold_7G00197800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004553
Physical Location & Seq
Reverse (-)
42370055 .. 42383885
13831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197800.1

Sequence Viewer

Length: 342 bp
ATGAGAGAGAAGGGTTGGATGACTAACGTTAAAGACATAATTATAACTCGCGGAACTGAACTCCTTCTAATACGAACCTACAAGACGATCTTTACGGTTCTAAGGAATCCTGCTCTTCTCGGTCCTCTACACGTACGTGGTAGTGATTCGTCATGGGAAGCACGTAAACGACGCTATAAGGCCGAGAAGTTGCACGGTGGAGCAACAAATCTCCCAATTCGGGGCTCACCTTTGTCGGCCATATCTTCTTCCACACGGGCCTCCAATCGACTTGATTCTAAAAGGGATTTTACTGGGCTTGAGCTCGATTACAACTTTGTAGAAGACATCGAGGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.88

Weight (kDa)

9.91

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 44
AccII CGCG 1 cut(s) 51
AciI CCGC 1 cut(s) 51
AclI AACGTT 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 237
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 220, 221
AflIII ACRYGT 1 cut(s) 130
AleI CACNNNNGTG 1 cut(s) 135
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw21I GWGCWC 1 cut(s) 306
AoxI GGCC 3 cut(s) 180, 237, 258
Asp700I GAANNNNTTC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 122, 258
AsuHPI GGTGA 1 cut(s) 219
AvaII GGWCC 1 cut(s) 122
BanII GRGCYC 2 cut(s) 227, 306
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 122, 258
BmrI ACTGGG 1 cut(s) 303
BmuI ACTGGG 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 320
BsaAI YACGTR 3 cut(s) 133, 137, 164
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 221
Bse1I ACTGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 220, 221
BseNI ACTGG 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 3 cut(s) 182, 239, 260
BsiHKAI GWGCWC 1 cut(s) 306
BsiWI CGTACG 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 220, 221
BsnI GGCC 3 cut(s) 182, 239, 260
Bsp1286I GDGCHC 2 cut(s) 227, 306
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 1 cut(s) 51
BspANI GGCC 3 cut(s) 182, 239, 260
BspFNI CGCG 1 cut(s) 51
BspQI GCTCTTC 1 cut(s) 120
BsrI ACTGG 1 cut(s) 298
BssMI GATC 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 97, 197
Bst6I CTCTTC 1 cut(s) 120
BstBAI YACGTR 3 cut(s) 133, 137, 164
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 24
BstFNI CGCG 1 cut(s) 51
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstUI CGCG 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 330
BsuRI GGCC 3 cut(s) 182, 239, 260
BtsCI GGATG 1 cut(s) 24
Cfr13I GGNCC 2 cut(s) 122, 258
CseI GACGC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 134
CviAII CATG 1 cut(s) 153
CviJI RGCY 6 cut(s) 182, 225, 239, 260, 298, 304
CviKI_1 RGCY 6 cut(s) 182, 225, 239, 260, 298, 304
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 304
Eco24I GRGCYC 2 cut(s) 227, 306
Eco47I GGWCC 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 304
EcoT38I GRGCYC 2 cut(s) 227, 306
FaeI CATG 1 cut(s) 156
FaiI YATR 5 cut(s) 38, 44, 154, 177, 242
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FatI CATG 1 cut(s) 152
FokI GGATG 1 cut(s) 31
FriOI GRGCYC 2 cut(s) 227, 306
HaeIII GGCC 3 cut(s) 182, 239, 260
HgaI GACGC 1 cut(s) 180
Hin1II CATG 1 cut(s) 156
HinfI GANTC 3 cut(s) 106, 146, 275
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 2 cut(s) 4, 74
HpyCH4III ACNGT 2 cut(s) 97, 197
HpyCH4IV ACGT 4 cut(s) 27, 132, 136, 163
HpyCH4V TGCA 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 101
HpySE526I ACGT 4 cut(s) 27, 132, 136, 163
Hsp92II CATG 1 cut(s) 156
Kzo9I GATC 1 cut(s) 87
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 2 cut(s) 123, 279
MaeII ACGT 4 cut(s) 27, 132, 136, 163
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 4 cut(s) 107, 237, 240, 335
MhlI GDGCHC 2 cut(s) 227, 306
MluCI AATT 2 cut(s) 39, 216
MnlI CCTC 3 cut(s) 135, 271, 325
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 135
MvnI CGCG 1 cut(s) 51
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 156
NmeAIII GCCGAG 1 cut(s) 208
OliI CACNNNNGTG 1 cut(s) 135
PciSI GCTCTTC 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 3 cut(s) 106, 146, 275
Pfl23II CGTACG 1 cut(s) 133
Ppu21I YACGTR 3 cut(s) 133, 137, 164
PsiI TTATAA 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 306
Psp1406I AACGTT 1 cut(s) 27
PspLI CGTACG 1 cut(s) 133
PspPI GGNCC 2 cut(s) 122, 258
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 135
SacI GAGCTC 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 30
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 2 cut(s) 122, 258
SduI GDGCHC 2 cut(s) 227, 306
SetI ASST 7 cut(s) 30, 80, 135, 139, 166, 232, 306
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 2 cut(s) 39, 216
SsiI CCGC 1 cut(s) 51
SstI GAGCTC 1 cut(s) 306
TaaI ACNGT 2 cut(s) 97, 197
TaiI ACGT 4 cut(s) 30, 135, 139, 166
TaqI TCGA 3 cut(s) 268, 306, 330
TaqII GACCGA 1 cut(s) 110
TasI AATT 2 cut(s) 39, 216
TfiI GAWTC 3 cut(s) 106, 146, 275
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.