Rh1CG272800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004553
Physical Location & Seq
Reverse (-)
53937864 .. 53938630
767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG272800.1

Sequence Viewer

Length: 567 bp
ATGGAGGTTGACTCGGAAATCAGAAACTTGGCAACAAAGAAGGTAATGATCTACTTCCCACAACCGGCAAAGCCTGACATCAAGCTTAATGAAGCTGATGGCCCCAAGGACAACCACAATCCTCCTTCTCCTGGTTGGACTCCGGTGGGAAGAAGGAACCATAGTGTAAGTAAACCTGCTGATACTGAAACAAGCGACAATGGTACAAACAAGAATAAGGAGAAGTTTAAGGTCTATACTCGAAATAGCAAGGAAGTGATGGCACCTAAGAAAACTACTAGGCAGGCTCTTATCAAGCCCGGGATAAGCTTCAAGGATGTTGCCAAAGGGCATTGCACCATTGTGGTTGGTGACAAGGAAACTTATAATTTTTTCAAAGCTCAAGGGCACAAGATGGCTGTCAGGGCTGCTGGAAGCTCATCCTCAAGTGAGGAGGTGTTTGAAAATTTTAATGATGCTAGGGCATCTGGCTTTGAGGAAGATGACAACATGAATGAATATGAGATCAAGATGATCAATGGAAAGAGGGCTTTGTTTGCTAAGGAAATGCATTCGAGAAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.14

Weight (kDa)

9.39

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
Acc36I ACCTGC 1 cut(s) 184
AccB1I GGYRCC 1 cut(s) 262
AcsI RAATTY 1 cut(s) 445
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 2 cut(s) 64, 131
AgsI TTSAA 3 cut(s) 313, 376, 443
AjnI CCWGG 1 cut(s) 130
AleI CACNNNNGTG 1 cut(s) 341
AluBI AGCT 5 cut(s) 85, 95, 309, 380, 417
AluI AGCT 5 cut(s) 85, 95, 309, 380, 417
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 1 cut(s) 445
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 2 cut(s) 300, 301
AsuHPI GGTGA 1 cut(s) 362
AvaI CYCGRG 1 cut(s) 299
BaeGI GKGCMC 1 cut(s) 390
BanI GGYRCC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 394
BccI CCATC 3 cut(s) 92, 253, 388
BciT130I CCWGG 1 cut(s) 132
BclI TGATCA 1 cut(s) 513
BcnI CCSGG 2 cut(s) 300, 301
BfaI CTAG 2 cut(s) 279, 459
BfuAI ACCTGC 1 cut(s) 184
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme1390I CCNGG 3 cut(s) 132, 300, 301
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 3 cut(s) 103, 158, 264
BmrFI CCNGG 3 cut(s) 132, 300, 301
BmsI GCATC 2 cut(s) 445, 473
BplI GAGNNNNNCTC 1 cut(s) 28
Bpu10I CCTNAGC 1 cut(s) 540
BpuEI CTTGAG 2 cut(s) 366, 409
BpuMI CCSGG 2 cut(s) 300, 301
BsaJI CCNNGG 2 cut(s) 105, 299
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 131
Bse118I RCCGGY 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 105, 299
BseGI GGATG 2 cut(s) 322, 419
BseLI CCNNNNNNNGG 2 cut(s) 64, 131
BseMI GCAATG 1 cut(s) 331
BseRI GAGGAG 1 cut(s) 446
BseSI GKGCMC 1 cut(s) 390
BseXI GCAGC 1 cut(s) 394
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 3 cut(s) 65, 143, 300
BslI CCNNNNNNNGG 2 cut(s) 64, 131
BsmI GAATGC 1 cut(s) 550
BsnI GGCC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 3 cut(s) 48, 504, 513
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 3 cut(s) 103, 158, 264
BspMI ACCTGC 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 105, 299
BssMI GATC 3 cut(s) 48, 504, 513
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 267, 540
BstF5I GGATG 2 cut(s) 322, 419
BstKTI GATC 3 cut(s) 51, 507, 516
BstMBI GATC 3 cut(s) 48, 504, 513
BstMWI GCNNNNNNNGC 2 cut(s) 404, 536
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 3 cut(s) 130, 298, 299
BstSLI GKGCMC 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 394
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 2 cut(s) 322, 419
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 101
Cfr9I CCCGGG 1 cut(s) 299
Csp6I GTAC 1 cut(s) 204
CviAII CATG 1 cut(s) 490
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 2 cut(s) 267, 540
DpnI GATC 3 cut(s) 50, 506, 515
DpnII GATC 3 cut(s) 48, 504, 513
Eco130I CCWWGG 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 493
FaiI YATR 5 cut(s) 162, 237, 366, 491, 501
FatI CATG 1 cut(s) 489
FbaI TGATCA 1 cut(s) 513
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 2 cut(s) 329, 406
Fsp4HI GCNGC 1 cut(s) 408
FspBI CTAG 2 cut(s) 279, 459
GluI GCNGC 1 cut(s) 408
HaeIII GGCC 1 cut(s) 102
HapII CCGG 3 cut(s) 65, 143, 300
Hin1II CATG 1 cut(s) 493
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HindIII AAGCTT 2 cut(s) 83, 307
HinfI GANTC 2 cut(s) 11, 139
HpaII CCGG 3 cut(s) 65, 143, 300
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 2 cut(s) 10, 173
Hpy188I TCNGA 2 cut(s) 16, 23
Hpy188III TCNNGA 2 cut(s) 508, 555
Hpy8I GTNNAC 2 cut(s) 10, 173
HpyAV CCTTC 3 cut(s) 34, 135, 147
HpyCH4V TGCA 2 cut(s) 336, 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 536
HpyF3I CTNAG 2 cut(s) 267, 540
Hsp92II CATG 1 cut(s) 493
Ksp22I TGATCA 1 cut(s) 513
Kzo9I GATC 3 cut(s) 48, 504, 513
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 2 cut(s) 445, 473
MaeI CTAG 2 cut(s) 279, 459
MaeIII GTNAC 1 cut(s) 350
MalI GATC 3 cut(s) 50, 506, 515
MboI GATC 3 cut(s) 48, 504, 513
MboII GAAGA 2 cut(s) 162, 491
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 2 cut(s) 367, 445
MlyI GAGTC 2 cut(s) 5, 133
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 6 cut(s) 132, 424, 427, 433, 469, 519
Mph1103I ATGCAT 1 cut(s) 552
MseI TTAA 3 cut(s) 87, 228, 450
MslI CAYNNNNRTG 1 cut(s) 341
MspI CCGG 3 cut(s) 65, 143, 300
MspR9I CCNGG 3 cut(s) 132, 300, 301
Mva1269I GAATGC 1 cut(s) 550
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 404, 536
NciI CCSGG 2 cut(s) 300, 301
NdeII GATC 3 cut(s) 48, 504, 513
NlaIII CATG 1 cut(s) 493
NlaIV GGNNCC 3 cut(s) 103, 158, 264
NmuCI GTSAC 1 cut(s) 350
NsiI ATGCAT 1 cut(s) 552
OliI CACNNNNGTG 1 cut(s) 341
PctI GAATGC 1 cut(s) 550
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 2 cut(s) 5, 133
PpsI GAGTC 2 cut(s) 5, 133
PsiI TTATAA 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 3 cut(s) 103, 158, 264
PspPI GGNCC 1 cut(s) 101
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 3 cut(s) 87, 228, 450
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 3 cut(s) 48, 504, 513
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 2 cut(s) 5, 133
ScrFI CCNGG 3 cut(s) 132, 300, 301
SduI GDGCHC 1 cut(s) 390
SfaNI GCATC 2 cut(s) 445, 473
SmaI CCCGGG 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 2 cut(s) 381, 424
SmoI CTYRAG 2 cut(s) 381, 424
Sse9I AATT 2 cut(s) 367, 445
SspMI CTAG 2 cut(s) 279, 459
StyD4I CCNGG 3 cut(s) 130, 298, 299
StyI CCWWGG 1 cut(s) 105
TaqI TCGA 2 cut(s) 241, 554
TasI AATT 2 cut(s) 367, 445
Tru1I TTAA 3 cut(s) 87, 228, 450
Tru9I TTAA 3 cut(s) 87, 228, 450
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 1 cut(s) 407
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 3 cut(s) 105, 506, 510
TspMI CCCGGG 1 cut(s) 299
XapI RAATTY 1 cut(s) 445
XmaI CCCGGG 1 cut(s) 299
XspI CTAG 2 cut(s) 279, 459
Zsp2I ATGCAT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.