Rroxscaffold_5G00346240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004553
Physical Location & Seq
Forward (+)
16968602 .. 16972242
3641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00346240.1

Sequence Viewer

Length: 291 bp
ATGGAGAATGGCTATCCCCTGGTTTCAGTTTTCTGCTTTGAAGACATCAAAGTGAAAAAAGAACCGTGGAAGGCACTAGGAGGCCGAGAAGCCGCACGGCTCGAGCTGAAATTCGCCCAAGCTGCTCTTCCTTCACCGGCCGATATCTTTCTCATCCGACCTCCAATTGATTTGATTCCAAAAGTATTTTCGTTCACCTTGAAGTCATTTAAAACTTTCAAGATGACAACGATGGGAAATAACCATCGTGGTGGTCTCTGCAAGTTGAAGAACATGGTGCAGCCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.8

Weight (kDa)

9.74

Isoelectric Point (pI)

25.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 93
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 110
AgsI TTSAA 4 cut(s) 41, 202, 220, 268
AjnI CCWGG 1 cut(s) 18
AjuI GAANNNNNNNTTGG 4 cut(s) 111, 143, 172, 204
AluBI AGCT 2 cut(s) 106, 122
AluI AGCT 2 cut(s) 106, 122
Alw26I GTCTC 1 cut(s) 260
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 2 cut(s) 82, 138
ApeKI GCWGC 2 cut(s) 122, 280
ApoI RAATTY 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 126, 187
AvaI CYCGRG 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 109
BccI CCATC 2 cut(s) 226, 252
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 1 cut(s) 77
BisI GCNGC 3 cut(s) 93, 123, 281
BlsI GCNGC 3 cut(s) 94, 124, 282
Bme1390I CCNGG 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 18, 65
Bse118I RCCGGY 1 cut(s) 136
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 18, 65
BseGI GGATG 1 cut(s) 153
BseX3I CGGCCG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 2 cut(s) 84, 140
BsiEI CGRYCG 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 2 cut(s) 84, 140
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 101
BspACI CCGC 1 cut(s) 93
BspANI GGCC 2 cut(s) 84, 140
BspQI GCTCTTC 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 260
BsrFI RCCGGY 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 18, 65
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 260
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 48
BstXI CCANNNNNNTGG 1 cut(s) 251
BstZI CGGCCG 1 cut(s) 138
BsuRI GGCC 2 cut(s) 84, 140
BtgI CCRYGG 1 cut(s) 65
BtsCI GGATG 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 136
CviAII CATG 1 cut(s) 274
CviJI RGCY 8 cut(s) 12, 84, 92, 100, 106, 122, 140, 283
CviKI_1 RGCY 8 cut(s) 12, 84, 92, 100, 106, 122, 140, 283
DraI TTTAAA 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 138
EagI CGGCCG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
EclXI CGGCCG 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 260
Eco32I GATATC 1 cut(s) 145
Eco52I CGGCCG 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 18
EcoRV GATATC 1 cut(s) 145
FaeI CATG 1 cut(s) 277
FaiI YATR 1 cut(s) 275
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FatI CATG 1 cut(s) 273
Fnu4HI GCNGC 3 cut(s) 93, 123, 281
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 3 cut(s) 93, 123, 281
FspBI CTAG 1 cut(s) 77
GluI GCNGC 3 cut(s) 93, 123, 281
HaeIII GGCC 2 cut(s) 84, 140
HapII CCGG 1 cut(s) 137
Hin1II CATG 1 cut(s) 277
HinfI GANTC 1 cut(s) 175
HpaII CCGG 1 cut(s) 137
HphI GGTGA 2 cut(s) 126, 187
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 64, 141
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 261, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
Hsp92II CATG 1 cut(s) 277
LguI GCTCTTC 1 cut(s) 132
LpnPI CCDG 3 cut(s) 5, 32, 150
Lsp1109I GCAGC 1 cut(s) 109
MaeI CTAG 1 cut(s) 77
MboII GAAGA 3 cut(s) 53, 119, 280
MfeI CAATTG 1 cut(s) 165
MluCI AATT 2 cut(s) 110, 165
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 2 cut(s) 74, 171
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 2 cut(s) 50, 249
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 20
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 122
NlaIII CATG 1 cut(s) 277
NmeAIII GCCGAG 1 cut(s) 110
PaeR7I CTCGAG 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 3 cut(s) 94, 124, 282
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspXI VCTCGAGB 1 cut(s) 101
RseI CAYNNNNRTG 2 cut(s) 50, 249
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 93, 123, 281
ScrFI CCNGG 1 cut(s) 20
SetI ASST 4 cut(s) 108, 124, 163, 200
Sfr274I CTCGAG 1 cut(s) 101
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 2 cut(s) 50, 249
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 2 cut(s) 110, 165
SsiI CCGC 1 cut(s) 93
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 102
TasI AATT 2 cut(s) 110, 165
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 2 cut(s) 122, 280
XapI RAATTY 1 cut(s) 110
XhoI CTCGAG 1 cut(s) 101
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.