Rroxscaffold_1G00030210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004553
Physical Location & Seq
Reverse (-)
39605731 .. 39616223
10493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030210.1

Sequence Viewer

Length: 618 bp
ATGGGTGGTGGTGCAGCTGGAAGTGGCCGGAAAATAAGAAATCGCCGGAGACACGAAATGGCCACCAAGTTCATTGCCTTGCTGCACCTCCTACGGCCCAAATCGTGCCACCAAAGTACTACGGACGTGAAGAGGAGGAAGAGATGGTTCCATAGGCTGCTGGCCTTGTCCAAATCGAGTTGCCGGACGAGGGAGAAACAGCCGGCCAAAGCCGACGGGGTCGAGGAGAGAGAAACGGAGAGGAGAGAGAAAGTGTGCATCACCACGCCTCAATCTCAAGAAGACATCAAAGTGAGAAAAGAACCGTGGAAGGCGCTAGGAGGCGAGAATCTGCACGGCTCGAGCTGGAATTCTCCCGATGCTGCTCTTCCTTCACCGGCCGATATCTCTCTCATCCGACCTCGAATCGAGTTGATTCTAAAAGTCAAGTCAAGGCTTCTACGTTCTGATCAATCAGTTGCTACTTTCAAGAAGACAAGTTTGATGTCGTTGTACGTATCTCTAACCCATGCTTTGCTTGCTTTGGACATGGTAAAAATGGTCCCTTCCCGATGTCCTGACATTATTTCACTGCCTTCACGGACAGTAACAATAGCATTGCCCAAGGCTCTCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.04

Weight (kDa)

10.61

Isoelectric Point (pI)

76.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 4 cut(s) 25, 60, 204, 378
AcsI RAATTY 1 cut(s) 349
AfaI GTAC 2 cut(s) 118, 494
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 1 cut(s) 469
AjiI CACGTC 1 cut(s) 127
AluBI AGCT 3 cut(s) 17, 345, 615
AluI AGCT 3 cut(s) 17, 345, 615
Alw26I GTCTC 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 340
AoxI GGCC 6 cut(s) 25, 60, 95, 162, 204, 378
ApeKI GCWGC 4 cut(s) 14, 82, 157, 362
ApoI RAATTY 1 cut(s) 349
AspLEI GCGC 1 cut(s) 316
AspS9I GGNCC 2 cut(s) 96, 541
AsuHPI GGTGA 2 cut(s) 253, 366
AvaI CYCGRG 1 cut(s) 340
AvaII GGWCC 1 cut(s) 541
BalI TGGCCA 1 cut(s) 62
BbsI GAAGAC 2 cut(s) 288, 479
BbvI GCAGC 4 cut(s) 26, 69, 144, 349
BccI CCATC 1 cut(s) 138
BceAI ACGGC 2 cut(s) 110, 352
BclI TGATCA 1 cut(s) 448
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 2 cut(s) 317, 616
BfoI RGCGCY 1 cut(s) 317
BisI GCNGC 4 cut(s) 15, 83, 158, 363
BlsI GCNGC 4 cut(s) 16, 84, 159, 364
BmcAI AGTACT 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 541
BmeT110I CYCGRG 1 cut(s) 340
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 96, 541
BmiI GGNNCC 2 cut(s) 149, 543
BmsI GCATC 2 cut(s) 267, 349
BpiI GAAGAC 2 cut(s) 288, 479
BpuEI CTTGAG 1 cut(s) 261
BsaAI YACGTR 1 cut(s) 496
BsaJI CCNNGG 2 cut(s) 305, 603
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse118I RCCGGY 2 cut(s) 202, 376
Bse3DI GCAATG 2 cut(s) 72, 596
BseDI CCNNGG 2 cut(s) 305, 603
BseGI GGATG 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMI GCAATG 2 cut(s) 72, 596
BseRI GAGGAG 3 cut(s) 148, 239, 256
BseX3I CGGCCG 1 cut(s) 378
BseXI GCAGC 4 cut(s) 26, 69, 144, 349
BsgI GTGCAG 3 cut(s) 33, 68, 317
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 6 cut(s) 27, 62, 97, 164, 206, 380
BsiEI CGRYCG 1 cut(s) 381
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 5 cut(s) 28, 46, 184, 203, 377
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 527
BsnI GGCC 6 cut(s) 27, 62, 97, 164, 206, 380
BsoBI CYCGRG 1 cut(s) 340
Bsp143I GATC 1 cut(s) 448
BspANI GGCC 6 cut(s) 27, 62, 97, 164, 206, 380
BspLI GGNNCC 2 cut(s) 149, 543
BspQI GCTCTTC 1 cut(s) 372
BsrDI GCAATG 2 cut(s) 72, 596
BsrFI RCCGGY 2 cut(s) 202, 376
BssAI RCCGGY 2 cut(s) 202, 376
BssECI CCNNGG 2 cut(s) 305, 603
BssMI GATC 1 cut(s) 448
BssT1I CCWWGG 1 cut(s) 603
Bst4CI ACNGT 2 cut(s) 306, 586
Bst6I CTCTTC 3 cut(s) 125, 134, 372
BstBAI YACGTR 1 cut(s) 496
BstC8I GCNNGC 3 cut(s) 162, 204, 519
BstDEI CTNAG 1 cut(s) 611
BstDSI CCRYGG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 393
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 1 cut(s) 448
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 1 cut(s) 518
BstSNI TACGTA 1 cut(s) 496
BstV1I GCAGC 4 cut(s) 26, 69, 144, 349
BstV2I GAAGAC 2 cut(s) 288, 479
BstZI CGGCCG 1 cut(s) 378
BsuRI GGCC 6 cut(s) 27, 62, 97, 164, 206, 380
BtgI CCRYGG 1 cut(s) 305
BtrI CACGTC 1 cut(s) 127
BtsCI GGATG 1 cut(s) 393
BtsI GCAGTG 1 cut(s) 569
BtsIMutI CAGTG 1 cut(s) 569
Cac8I GCNNGC 3 cut(s) 162, 204, 519
CfoI GCGC 1 cut(s) 316
Cfr10I RCCGGY 2 cut(s) 202, 376
Cfr13I GGNCC 2 cut(s) 96, 541
Csp6I GTAC 2 cut(s) 117, 493
CviAII CATG 2 cut(s) 509, 529
CviQI GTAC 2 cut(s) 117, 493
DdeI CTNAG 1 cut(s) 611
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
EaeI YGGCCR 4 cut(s) 25, 60, 204, 378
EagI CGGCCG 1 cut(s) 378
Eam1104I CTCTTC 3 cut(s) 125, 134, 372
EarI CTCTTC 3 cut(s) 125, 134, 372
EclXI CGGCCG 1 cut(s) 378
Eco105I TACGTA 1 cut(s) 496
Eco130I CCWWGG 1 cut(s) 603
Eco32I GATATC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 541
Eco52I CGGCCG 1 cut(s) 378
Eco88I CYCGRG 1 cut(s) 340
EcoRI GAATTC 1 cut(s) 349
EcoRV GATATC 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 2 cut(s) 512, 532
FaiI YATR 3 cut(s) 153, 510, 530
FaqI GGGAC 1 cut(s) 527
FatI CATG 2 cut(s) 508, 528
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 4 cut(s) 15, 83, 158, 363
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 4 cut(s) 15, 83, 158, 363
FspBI CTAG 2 cut(s) 317, 616
GlaI GCGC 1 cut(s) 315
GluI GCNGC 4 cut(s) 15, 83, 158, 363
HaeII RGCGCY 1 cut(s) 317
HaeIII GGCC 6 cut(s) 27, 62, 97, 164, 206, 380
HapII CCGG 5 cut(s) 28, 46, 184, 203, 377
HhaI GCGC 1 cut(s) 316
Hin1II CATG 2 cut(s) 512, 532
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HinfI GANTC 3 cut(s) 328, 405, 415
HpaII CCGG 5 cut(s) 28, 46, 184, 203, 377
HphI GGTGA 2 cut(s) 253, 366
Hpy188I TCNGA 2 cut(s) 398, 448
Hpy188III TCNNGA 5 cut(s) 278, 356, 469, 549, 557
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 4 cut(s) 304, 381, 555, 585
HpyCH4III ACNGT 2 cut(s) 306, 586
HpyCH4IV ACGT 3 cut(s) 126, 442, 495
HpyCH4V TGCA 4 cut(s) 14, 85, 258, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 518
HpyF3I CTNAG 1 cut(s) 611
HpySE526I ACGT 3 cut(s) 126, 442, 495
Hsp92II CATG 2 cut(s) 512, 532
HspAI GCGC 1 cut(s) 314
KroI GCCGGC 1 cut(s) 202
KroNI GCCGGC 1 cut(s) 204
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 1 cut(s) 448
LguI GCTCTTC 1 cut(s) 372
LpnPI CCDG 9 cut(s) 3, 41, 59, 146, 197, 216, 331, 390, 570
Lsp1109I GCAGC 4 cut(s) 26, 69, 144, 349
LweI GCATC 2 cut(s) 267, 349
MaeI CTAG 2 cut(s) 317, 616
MaeII ACGT 3 cut(s) 126, 442, 495
MaeIII GTNAC 1 cut(s) 586
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 5 cut(s) 142, 151, 293, 359, 484
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 1 cut(s) 349
MluNI TGGCCA 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 9 cut(s) 98, 126, 129, 183, 217, 234, 279, 314, 411
Mox20I TGGCCA 1 cut(s) 62
MroNI GCCGGC 1 cut(s) 202
MscI TGGCCA 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 5 cut(s) 28, 46, 184, 203, 377
MwoI GCNNNNNNNGC 1 cut(s) 518
NaeI GCCGGC 1 cut(s) 204
NdeII GATC 1 cut(s) 448
NgoMIV GCCGGC 1 cut(s) 202
NlaIII CATG 2 cut(s) 512, 532
NlaIV GGNNCC 2 cut(s) 149, 543
PaeR7I CTCGAG 1 cut(s) 340
PciSI GCTCTTC 1 cut(s) 372
PdiI GCCGGC 1 cut(s) 204
PfeI GAWTC 3 cut(s) 328, 405, 415
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 4 cut(s) 16, 84, 159, 364
Ppu21I YACGTR 1 cut(s) 496
PspN4I GGNNCC 2 cut(s) 149, 543
PspPI GGNCC 2 cut(s) 96, 541
PspXI VCTCGAGB 1 cut(s) 340
PsyI GACNNNGTC 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 2 cut(s) 118, 494
RsaNI GTAC 2 cut(s) 117, 493
RseI CAYNNNNRTG 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 372
SatI GCNGC 4 cut(s) 15, 83, 158, 363
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 2 cut(s) 96, 541
ScaI AGTACT 1 cut(s) 118
SetI ASST 8 cut(s) 19, 90, 129, 347, 403, 445, 498, 617
SfaNI GCATC 2 cut(s) 267, 349
Sfr274I CTCGAG 1 cut(s) 340
SinI GGWCC 1 cut(s) 541
SlaI CTCGAG 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 2 cut(s) 276, 340
SmoI CTYRAG 2 cut(s) 276, 340
SnaBI TACGTA 1 cut(s) 496
Sse9I AATT 1 cut(s) 349
SspMI CTAG 2 cut(s) 317, 616
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 2 cut(s) 306, 586
TaiI ACGT 3 cut(s) 129, 445, 498
TaqI TCGA 5 cut(s) 176, 222, 341, 403, 408
TasI AATT 1 cut(s) 349
TatI WGTACW 1 cut(s) 116
TfiI GAWTC 3 cut(s) 328, 405, 415
TscAI CASTG 1 cut(s) 576
TseI GCWGC 4 cut(s) 14, 82, 157, 362
TspDTI ATGAA 1 cut(s) 61
TspGWI ACGGA 3 cut(s) 137, 251, 595
TspRI CASTG 1 cut(s) 576
Tth111I GACNNNGTC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 541
XapI RAATTY 1 cut(s) 349
XhoI CTCGAG 1 cut(s) 340
XspI CTAG 2 cut(s) 317, 616
ZrmI AGTACT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.