Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004553

Physical Location & Seq

Genomic Coordinates Forward (+)

29739588 .. 29748178

Gene Structure 8591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00308230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAGAACCAGAATATTGTTTCACGGCATGGGTCGGCCGTGCACGACGCGAGCAAGGCCGGGAAGTTTGGCGGCTACGCTGCAAATCGTCTTGATCGGAGTCGGCGATTCCGACCACCTTTGTCGGTGATTCTTGAGGGCTTTTGGAGCCAAGATGACATAGATGCTTCTTCCCAAGGTGGCTTGCATCGATTCAAAGCGTGGAGGTTGAATTTTGGAGTTTGGGATTCTAGAGTTCAACGGAATTGTAAACTTTCAAGTACGATTCTGGTGTTTTTGAAGCTGGAGGCCACAAATGGAGGTTATCCCTTCACCCAAACGAAACGAGAAGAAGGGATTGGCTATATCTCCCTCTACTTGGCAATAGCGGAAACATATACTTATCCCGAAGGGTGGGAGGTGTATGCCCACTACAAATTGTTTGTGCTTGATCATTTACGGAAGAAGTACTTAACTGTCCAAGGTGAACAACTCTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

160

Amino Acids

18.28

Weight (kDa)

9.35

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004553)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17200
rosa_chinensis	RchiOBHm_Chr2g0131311 RchiOBHm_Chr7g0219971
rosa_laevigata	RLG00000009451 RLG00000034059
rosa_multiflora	Rmu_sc0002758.1_g000005 Rmu_sc0003861.1_g000004 Rmu_sc0018646.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432220 Rroxscaffold_1G00030210 Rroxscaffold_1G00033050 Rroxscaffold_1G00034250 Rroxscaffold_1G00039200 Rroxscaffold_2G00078570 Rroxscaffold_2G00089680 Rroxscaffold_2G00145370 Rroxscaffold_4G00308230 Rroxscaffold_4G00318460 Rroxscaffold_4G00321200 Rroxscaffold_4G00322640 Rroxscaffold_4G00325620 Rroxscaffold_4G00325790 Rroxscaffold_5G00344550 Rroxscaffold_5G00346240 Rroxscaffold_5G00356260 Rroxscaffold_5G00363420 Rroxscaffold_5G00376620 Rroxscaffold_7G00197800 Rroxscaffold_7G00198690 Rroxscaffold_7G00200910
rosa_samantha	Rh1CG272800 Rh5AG536300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	50
AciI	CCGC	2 cut(s)	72, 368
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	2 cut(s)	262, 449
AfiI	CCNNNNNNNGG	2 cut(s)	358, 393
AgsI	TTSAA	5 cut(s)	196, 211, 239, 258, 280
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw21I	GWGCWC	1 cut(s)	45
Alw44I	GTGCAC	1 cut(s)	41
AoxI	GGCC	3 cut(s)	36, 57, 288
ApaLI	GTGCAC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	3 cut(s)	139, 304, 476
BaeGI	GKGCMC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	67
BceAI	ACGGC	2 cut(s)	23, 41
BclI	TGATCA	1 cut(s)	430
BcnI	CCSGG	1 cut(s)	61
BfaI	CTAG	1 cut(s)	231
BisI	GCNGC	2 cut(s)	73, 81
BlsI	GCNGC	2 cut(s)	74, 82
BmcAI	AGTACT	1 cut(s)	449
Bme1390I	CCNGG	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	154, 196
BpmI	CTGGAG	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	175, 460
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 393
BseCI	ATCGAT	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	175, 460
BseLI	CCNNNNNNNGG	2 cut(s)	358, 393
BseSI	GKGCMC	1 cut(s)	45
BseX3I	CGGCCG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	3 cut(s)	38, 59, 290
BshVI	ATCGAT	1 cut(s)	190
BsiEI	CGRYCG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	358, 393
BsnI	GGCC	3 cut(s)	38, 59, 290
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	94, 430
BspACI	CCGC	2 cut(s)	72, 368
BspANI	GGCC	3 cut(s)	38, 59, 290
BspDI	ATCGAT	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	175, 460
BssMI	GATC	2 cut(s)	94, 430
BssT1I	CCWWGG	2 cut(s)	175, 460
Bst4CI	ACNGT	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	52, 185
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	2 cut(s)	97, 433
BstMBI	GATC	2 cut(s)	94, 430
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 147
BstSCI	CCNGG	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	45
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	67
BstZI	CGGCCG	1 cut(s)	36
Bsu15I	ATCGAT	1 cut(s)	190
BsuRI	GGCC	3 cut(s)	38, 59, 290
BsuTUI	ATCGAT	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	52, 185
ClaI	ATCGAT	1 cut(s)	190
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	261, 448
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	9 cut(s)	38, 59, 75, 141, 150, 183, 283, 290, 342
CviKI_1	RGCY	9 cut(s)	38, 59, 75, 141, 150, 183, 283, 290, 342
CviQI	GTAC	2 cut(s)	261, 448
DpnI	GATC	2 cut(s)	96, 432
DpnII	GATC	2 cut(s)	94, 430
EaeI	YGGCCR	1 cut(s)	36
EagI	CGGCCG	1 cut(s)	36
EclXI	CGGCCG	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	175, 460
Eco52I	CGGCCG	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	175, 460
ErhI	CCWWGG	2 cut(s)	175, 460
FaeI	CATG	1 cut(s)	32
FaiI	YATR	6 cut(s)	30, 161, 345, 376, 378, 405
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FatI	CATG	1 cut(s)	28
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	2 cut(s)	73, 81
Fsp4HI	GCNGC	2 cut(s)	73, 81
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	2 cut(s)	73, 81
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	3 cut(s)	38, 59, 290
HapII	CCGG	1 cut(s)	60
HgaI	GACGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	32
HinfI	GANTC	6 cut(s)	100, 108, 130, 192, 227, 265
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	3 cut(s)	139, 304, 476
Hpy166II	GTNNAC	3 cut(s)	43, 251, 467
Hpy188I	TCNGA	2 cut(s)	99, 113
Hpy188III	TCNNGA	4 cut(s)	92, 134, 231, 386
Hpy8I	GTNNAC	3 cut(s)	43, 251, 467
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	319, 326, 383
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4V	TGCA	3 cut(s)	43, 83, 187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 147
Hsp92II	CATG	1 cut(s)	32
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	94, 430
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	4 cut(s)	23, 73, 254, 269
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	2 cut(s)	154, 196
MaeI	CTAG	1 cut(s)	231
MalI	GATC	2 cut(s)	96, 432
MboI	GATC	2 cut(s)	94, 430
MboII	GAAGA	3 cut(s)	162, 341, 454
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	3 cut(s)	211, 244, 416
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	6 cut(s)	130, 198, 280, 293, 362, 391
MseI	TTAA	2 cut(s)	452, 481
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	61
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	56, 147
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	2 cut(s)	94, 430
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	2 cut(s)	103, 109
PfeI	GAWTC	5 cut(s)	108, 130, 192, 227, 265
PkrI	GCNGC	2 cut(s)	74, 82
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	262, 449
RsaNI	GTAC	2 cut(s)	261, 448
SaqAI	TTAA	2 cut(s)	452, 481
SatI	GCNGC	2 cut(s)	73, 81
Sau3AI	GATC	2 cut(s)	94, 430
ScaI	AGTACT	1 cut(s)	449
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	7 cut(s)	121, 181, 209, 285, 304, 402, 466
SfaNI	GCATC	2 cut(s)	154, 196
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	3 cut(s)	211, 244, 416
SsiI	CCGC	2 cut(s)	72, 368
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	2 cut(s)	175, 460
TaaI	ACNGT	1 cut(s)	457
TaqI	TCGA	1 cut(s)	190
TasI	AATT	3 cut(s)	211, 244, 416
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	5 cut(s)	108, 130, 192, 227, 265
Tru1I	TTAA	2 cut(s)	452, 481
Tru9I	TTAA	2 cut(s)	452, 481
TseI	GCWGC	1 cut(s)	80
TspGWI	ACGGA	2 cut(s)	256, 454
VneI	GTGCAC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	230
XspI	CTAG	1 cut(s)	231
ZrmI	AGTACT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.