Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004553

Physical Location & Seq

Genomic Coordinates Reverse (-)

53040691 .. 53041375

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009451

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAGTAAACCTGCTGCTACTGAAACAAGTGATAATGCTACTGACAAGAGTAAGGAAAAGTTTAAGGTCTATAATCGTAAGGGCAAGGAGGTGATGGCACCTAAGAAGGCTACTCGGCAGGCTCTTATCAAGCTGGGGATAAGTTTCAAGGATGCTGCTAAAGGGCAAGGAACTATTGTGATTGGTGATAAGGAAACTAATAGCTTTTTCAAAGCTCAGGGAAAAAAGAAAGCTGTTGGGGCTACAAGAAGCTCATCCTCAAGTGAGGAGGAGATGTTTGAAAATTTCAATGATGCTAGGGCTTCTGGCTTCGAGGAGGAAGATGACAGCATGAATGAATATGAGATTCAAATGATCAATGGAAAGAGGGCCTTGTTTGCTAAGGCGAAAAGCTTTGCAATGAGCTCGAGCTCCAGGAAGCGCAATCAAGAAGAAAATGAGGATGAAAGCATGGCTGATGCTGGTGAAGCTGATGGGGAGGACAACGCCTCTTCTCCTAAAATCCAGAAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

18.74

Weight (kDa)

6.46

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004553)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17200
rosa_chinensis	RchiOBHm_Chr2g0131311 RchiOBHm_Chr7g0219971
rosa_laevigata	RLG00000009451 RLG00000034059
rosa_multiflora	Rmu_sc0002758.1_g000005 Rmu_sc0003861.1_g000004 Rmu_sc0018646.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432220 Rroxscaffold_1G00030210 Rroxscaffold_1G00033050 Rroxscaffold_1G00034250 Rroxscaffold_1G00039200 Rroxscaffold_2G00078570 Rroxscaffold_2G00089680 Rroxscaffold_2G00145370 Rroxscaffold_4G00308230 Rroxscaffold_4G00318460 Rroxscaffold_4G00321200 Rroxscaffold_4G00322640 Rroxscaffold_4G00325620 Rroxscaffold_4G00325790 Rroxscaffold_5G00344550 Rroxscaffold_5G00346240 Rroxscaffold_5G00356260 Rroxscaffold_5G00363420 Rroxscaffold_5G00376620 Rroxscaffold_7G00197800 Rroxscaffold_7G00198690 Rroxscaffold_7G00200910
rosa_samantha	Rh1CG272800 Rh5AG536300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	283
AgsI	TTSAA	5 cut(s)	148, 211, 281, 289, 350
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	9 cut(s)	133, 204, 215, 233, 252, 393, 405, 411, 470
AluI	AGCT	9 cut(s)	133, 204, 215, 233, 252, 393, 405, 411, 470
Alw21I	GWGCWC	2 cut(s)	407, 413
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	2 cut(s)	14, 155
ApoI	RAATTY	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	369
AsuHPI	GGTGA	3 cut(s)	103, 197, 476
AvaI	CYCGRG	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	2 cut(s)	407, 413
Bbv12I	GWGCWC	2 cut(s)	407, 413
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	88, 467
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BciT130I	CCWGG	1 cut(s)	415
BclI	TGATCA	1 cut(s)	354
BfaI	CTAG	1 cut(s)	297
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	2 cut(s)	15, 156
BlsI	GCNGC	2 cut(s)	16, 157
Bme1390I	CCNGG	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	415
BmsI	GCATC	3 cut(s)	142, 283, 448
BpmI	CTGGAG	1 cut(s)	397
Bpu10I	CCTNAGC	2 cut(s)	216, 381
BpuEI	CTTGAG	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bse3DI	GCAATG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	415
BseGI	GGATG	3 cut(s)	157, 254, 448
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	230
BseRI	GAGGAG	3 cut(s)	281, 284, 329
BseXI	GCAGC	1 cut(s)	142
BseYI	CCCAGC	1 cut(s)	133
BshFI	GGCC	1 cut(s)	371
BshNI	GGYRCC	1 cut(s)	97
BsiHKAI	GWGCWC	2 cut(s)	407, 413
BsiHKCI	CYCGRG	1 cut(s)	406
BsnI	GGCC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	406
Bsp1286I	GDGCHC	2 cut(s)	407, 413
Bsp143I	GATC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	99
BspMI	ACCTGC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	405
BssMI	GATC	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	496
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	102, 216, 381
BstF5I	GGATG	3 cut(s)	157, 254, 448
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 377, 467
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	413
BstV1I	GCAGC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	371
BtsCI	GGATG	3 cut(s)	157, 254, 448
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	120
CfoI	GCGC	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	369
CviAII	CATG	3 cut(s)	331, 451, 513
DdeI	CTNAG	3 cut(s)	102, 216, 381
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Ecl136II	GAGCTC	2 cut(s)	405, 411
Eco24I	GRGCYC	2 cut(s)	407, 413
Eco53kI	GAGCTC	2 cut(s)	405, 411
Eco88I	CYCGRG	1 cut(s)	406
EcoICRI	GAGCTC	2 cut(s)	405, 411
EcoO109I	RGGNCCY	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	413
EcoT38I	GRGCYC	2 cut(s)	407, 413
FaeI	CATG	3 cut(s)	334, 454, 516
FaiI	YATR	5 cut(s)	72, 332, 342, 452, 514
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	3 cut(s)	330, 450, 512
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	15, 156
FokI	GGATG	3 cut(s)	164, 241, 455
FriOI	GRGCYC	2 cut(s)	407, 413
Fsp4HI	GCNGC	2 cut(s)	15, 156
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	2 cut(s)	15, 156
GsaI	CCCAGC	1 cut(s)	137
GsuI	CTGGAG	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	371
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	3 cut(s)	334, 454, 516
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	1 cut(s)	346
HphI	GGTGA	3 cut(s)	103, 197, 476
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188III	TCNNGA	2 cut(s)	428, 505
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 377, 467
HpyF3I	CTNAG	3 cut(s)	102, 216, 381
Hsp92II	CATG	3 cut(s)	334, 454, 516
HspAI	GCGC	1 cut(s)	421
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	1 cut(s)	416
LpnPI	CCDG	8 cut(s)	24, 104, 119, 203, 291, 400, 427, 447
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	3 cut(s)	142, 283, 448
MaeI	CTAG	1 cut(s)	297
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	3 cut(s)	332, 443, 483
MhlI	GDGCHC	2 cut(s)	407, 413
MluCI	AATT	1 cut(s)	283
MseI	TTAA	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	415
MwoI	GCNNNNNNNGC	3 cut(s)	239, 377, 467
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	3 cut(s)	334, 454, 516
NlaIV	GGNNCC	1 cut(s)	99
NmeAIII	GCCGAG	1 cut(s)	94
PaeR7I	CTCGAG	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	346
PfoI	TCCNGGA	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	16, 157
Psp124BI	GAGCTC	2 cut(s)	407, 413
Psp6I	CCWGG	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	369
PspXI	VCTCGAGB	1 cut(s)	406
SacI	GAGCTC	2 cut(s)	407, 413
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	2 cut(s)	15, 156
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	1 cut(s)	369
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	2 cut(s)	407, 413
SfaNI	GCATC	3 cut(s)	142, 283, 448
Sfr274I	CTCGAG	1 cut(s)	406
SlaI	CTCGAG	1 cut(s)	406
SmlI	CTYRAG	2 cut(s)	259, 406
SmoI	CTYRAG	2 cut(s)	259, 406
Sse9I	AATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	2 cut(s)	407, 413
StyD4I	CCNGG	1 cut(s)	413
TaqI	TCGA	2 cut(s)	312, 407
TasI	AATT	1 cut(s)	283
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseI	GCWGC	2 cut(s)	14, 155
TspDTI	ATGAA	3 cut(s)	347, 351, 459
XapI	RAATTY	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	406
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.